KEGG   Castanea sativa (European chestnut): 142638130
Entry
142638130         CDS       T11266                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142638130
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142638130
   03041 Spliceosome [BR:csaa03041]
    142638130
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     142638130
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     142638130
Spliceosome [BR:csaa03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    142638130
SSDB
Motif
Pfam: RRM_1 RRM_7
Other DBs
NCBI-GeneID: 142638130
NCBI-ProteinID: XP_075668243
LinkDB
Position
6:26452603..26456220
AA seq 436 aa
MDLTKKRKLDENGVGLTVSDLDPSVPKLTPEDVRKIVDRIVDKGKLIDIVANAASRHVDV
LDAVRSLADSDSSQRKLFIRGLGWDTTTEGLRSLFSSYGELEEAVVILDKQTGKSKGYGF
VTFKHVDGALLALKEPSKRIDGRVTVTQLAAAGNSSSTTNSTDVSSRKIYVWEVPHDMSP
DKLLSHFLSYGEIEEGPLGFDRFTGKSKGFALFVYKNPEGAQAALANPLKIIDGKQLNCK
LANVDGKKGKQGDGVQVPGPVGGAAGNDGMGMGSIPGSQYPGPGGIGSYGGFHGGPPQPI
GHHHHPSSVNNQVPSSLGGAGGYGGPYSGYGGIGGTGAGLGGAGVGLSGSGGGSGGVGVG
VGVGAGVGVGGASSLYRLPPTSVGIPSGGYPESGHYSLSSSSGYQNQHHQPGTGTSPVPR
VPPGAGVMYPNVPHYF
NT seq 1311 nt   +upstreamnt  +downstreamnt
atggaccttactaagaagcgaaagctcgacgaaaatggcgtcggtctgaccgtctcggac
ttggacccctccgtcccgaaactcacacctgaagacgtgcgtaagatcgtggaccgcatc
gtcgacaagggcaaactcatcgacatcgtagccaacgccgcctcgcgccacgtggacgtc
cttgacgccgtccgatctctggccgactccgactcttcccagcgcaagctcttcatccgt
gggctgggttgggataccaccaccgaaggcctccgcagcctcttctcttcctacggagaa
ctcgaggaagccgtagtaattctcgacaagcagactggaaaatccaagggttacggcttc
gtcaccttcaagcacgtcgacggcgcgctcctcgccctcaaagagcccagcaaacgcatc
gacggccgcgttaccgtcacgcagctcgccgccgccgggaattcctcgtcgaccaccaac
tccaccgacgtgtcgtcacgcaagatctacgtttgggaggtcccgcatgacatgtctccc
gataagcttctttctcacttcttgtcctatggggagatcgaggaaggcccgttggggttc
gatagatttacaggtaagtcgaagggttttgcgctttttgtttacaagaatcccgagggg
gcacaggctgcgttggctaatcctctcaagattattgatgggaagcaattgaattgtaaa
ttggctaatgtggatggcaagaaagggaagcaaggtgatggggttcaggttcctggccct
gttggtggggctgctgggaatgatggtatgggaatgggttccattcccgggtcgcagtat
cctgggccgggtggaattggatcgtatggtggctttcacggtgggccgccgcagcctata
ggacatcatcatcatccgtcctccgtgaataatcaggtgccttcgtctctgggtggcgct
ggtgggtatggtgggccgtatagtgggtatggtggcattggtgggactggtgctggattg
ggtggagctggagtgggattaagtggcagcggaggcggctctgggggtgttggtgttggt
gttggtgtaggtgctggtgttggtgttggtggggcttcttctttgtatagattgccgcct
acttcggtgggaattccctctggtgggtatccagagagtgggcattatagcttgtcctcc
tcatctgggtatcagaatcagcaccaccagccagggaccgggacctcaccagtgccaaga
gttccacctggcgccggggtaatgtaccccaatgtcccacattacttctga

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