Castanea sativa (European chestnut): 142639097
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Entry
142639097 CDS
T11266
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142639097
03015 mRNA surveillance pathway
142639097
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142639097
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
142639097
mRNA cycle factors
P-body specific factors
142639097
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
142639097
NCBI-ProteinID:
XP_075669316
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Position
6:49502233..49520792
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AA seq
1221 aa
AA seq
DB search
MDHHEDECRVGAENHGKQDEEEAAARLEEMKKSVESKMALRQSNMNPERPDSGFLRTLDS
SIKRNTAVIKKLKQINEEQREGLMEDLRGVNLSKFVSEAVTAICDAKLRSSDIQAAVQIC
SLLHQRYKDFSPSLTQGLLKVFFPGKSGDDLDADKNLKAMKKRSTLKLLLELYFVGVIED
SGIFMNIIKDLTNLEHLKDRDTTQTNMTLLASFARQGRIFLGLTFSGQEIHEEFFKGLNI
TTDQKKFFRKAFHTYYDAAAELLQSEHDSLRQMEHENAKILNARGELSDENVSSYEKLRK
SYDHLYRNISSLAEALDMQPPVMPEDGHTTRVTTGEDASPPASGKDSSVLEALWDDEDTR
AFYEGLPDLRAFVPAVLLGEAEPKVNEQSAKTQEQQAELAPESDQRQQATQDTTEVSADS
GTLQEGKNLDRGKDKEEKDKEKTKDMDKEKGKDKDADKKGENEKEKLKGLEKTKDMDKEK
GKEKDSDKKGENEKEKLKGLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKSNRKKL
ARALFNVPRTSLELLPYYSRMVATLSTCMKDVSSMLLQMLEEEFNFLINKKDQMNIETKI
RNIRFIGELCKFKIATSGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPETTIRM
ANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVSKVRPPLHQYIRKLLFSDLD
KNTIEHVLRQLRKLPWSECEPYLLKCFMKVHKGKYGQIHLIASLTAGLSRYHDEFAIAVV
DEVLEEIRLGLELNDYGMQQRRIAHMRFLGELYNYEHVDSSVIFETLYLILVFGHGTPEQ
DALDPPEDSFRIRMVCTLLDTCGHYFDRGSSKRKLDRFLVHFQRYILSKGALPLDIEFDL
QDLFAELRPNMTRYSTIEEVNAAIIELEEHEHTVSTDKVSNEKHSDTEKRSRRNTSDATS
VNGQSINGTDENGVHEGIGDSDSESGSGSEPEGHDDEELDEENHDDGCDSEDEDDDDGGG
PASDDDDEVHVRQKAPEVDPLEEANFEQELKAVMQESMEQRRQELRGRPTLNMMIPMNVF
EGPTKDHHGRGGESGDETLDEEAGGSKEVPVKVLVKRGNKQQTKQMLIPRDCSLVQSTKQ
KEAAELEEKQDIKRLVLEYNDREEEELNGLGTQTINWSQGGGSRVASRGGNTWEGTGSRA
SGSRHRHHNYSGGGVYYSRKR
NT seq
3666 nt
NT seq
+upstream
nt +downstream
nt
atggatcaccatgaggacgaatgccgtgttggagctgaaaatcatggcaagcaagatgag
gaggaagctgctgctcgtcttgaggaaatgaagaaatcagttgagtcaaaaatggctctt
cgtcaaagcaatatgaatcctgaaaggcctgattcaggatttcttaggacattggactcc
agcattaaacgcaatacagcagttataaaaaaactaaagcagataaatgaagagcagcgc
gaaggcctgatggaagatttgcgaggtgtcaacctaagcaaatttgttagtgaagccgtc
acagctatatgtgatgccaagcttagaagttcagatatacaagcagcggttcagatctgc
tctttgcttcatcaaaggtataaagatttctcgccaagcctgactcaagggctcttgaag
gtattttttcctggaaagtctggggatgacttggatgcagataagaacttgaaggccatg
aaaaagcgcagcactctgaaactccttttggaactttactttgttggagttatagaagac
agtggcattttcatgaatatcattaaggatcttacaaacttagaacatttaaaggacaga
gatactactcagacaaatatgacccttcttgctagttttgcccgacaaggaagaattttc
ctaggacttacattctctggacaagaaattcatgaagagttttttaagggccttaatatc
acaacagatcaaaagaagtttttcaggaaggcattccatacatactatgatgctgcagct
gagctacttcagtccgagcatgattcacttcgtcaaatggagcatgaaaatgctaagatt
ctaaatgctagaggagagctcagtgatgaaaatgtctcctcatatgaaaagctgcggaaa
tcttatgaccatttgtaccgcaatatctcttctttagcagaagcacttgatatgcagccc
ccagtgatgccagaggatggtcacacaactagggttactactggggaggatgcttcacct
cctgcttctgggaaagattcttctgttctagaagctttgtgggatgatgaagataccagg
gctttctatgaaggcttacctgatctcagagcatttgtaccagcagtattattgggagaa
gcagaacccaaagtgaatgaacaatctgccaagacgcaagaacaacaggctgaactggca
cctgaatcagaccaacgtcagcaagctacccaagatacaacagaggtttctgcagactct
ggcactttgcaggaggggaaaaacttagatagagggaaagataaggaagaaaaagataaa
gaaaagactaaagatatggacaaagagaaagggaaagataaagatgcagataaaaagggg
gaaaatgaaaaggagaaactaaaaggtcttgaaaagactaaagatatggacaaagagaaa
gggaaagagaaagattcagataaaaagggggaaaatgaaaaggagaaattaaaaggtctt
gaaggcacaaatttggatgctttattacagaggcttccgggttgtgtgagccgtgatctt
atcgatcaactgactgtagaattctgttatttaaattcaaagtccaatcggaaaaagctt
gcaagggcattgtttaatgtcccgaggacatctctagaactactaccatactactcacgc
atggttgccacactttcaacttgtatgaaggatgtctcatccatgctgttgcagatgttg
gaggaggagttcaacttcttaattaataaaaaggatcaaatgaacattgaaacaaagata
aggaatattaggtttatcggagaactctgcaagtttaaaattgcaacatctggccttgtt
tttagttgtttgaaggcttgtttagatgatttcactcatcataatattgatgttgcttgc
aatcttctcgagacatgtggtcgttttctgtatcgatctcctgaaactaccattcggatg
gctaacatgttggaaattttgatgcgcttgaaaaatgtaaaaaatctggatcctcgccac
agcaccctagtggaaaatgcttactacctgtgcaaaccacctgaaagatctgcacgagtc
tctaaagtccgtcctccattgcatcagtatattaggaaattgctattttcagatcttgat
aagaacaccattgagcatgtcctgaggcaacttcgcaaattgccatggagtgaatgtgag
ccatatcttttaaaatgctttatgaaggttcacaaagggaagtatggtcagattcactta
attgcttctctcactgccggtttgagtcgctatcatgatgagtttgccattgctgttgtt
gatgaggttttggaggagattaggcttgggctagaattaaatgattatgggatgcaacaa
agacgcattgcccatatgcggttcttaggggagctgtataattatgagcatgtagactca
tctgttatttttgagacactttatttgattcttgtctttggccatggcactccagagcaa
gatgcactagacccaccagaagatagtttccgcatcaggatggtttgtactcttcttgac
acctgtgggcactactttgatcgaggctcttccaagaggaagcttgatagattcttagta
cattttcagaggtatattctcagcaaaggtgcactacctctagatattgaatttgactta
caggacttatttgctgaattacggcccaatatgactcgatactctaccattgaagaggtg
aatgcagctataatagaacttgaagagcatgaacatactgtttcaactgacaaggttagt
aatgagaagcactctgacacagaaaagcgttcaaggaggaatacttctgatgccacctca
gtgaatggacagagcattaatggcactgacgaaaacggtgtgcatgaaggcattggggac
agtgatagtgagtcggggagtggcagcgagccagagggacatgatgatgaagagttggat
gaagagaatcatgatgatggatgtgatagtgaggatgaggatgatgatgatgggggtgga
cctgcttctgatgatgacgatgaagtccatgtcaggcagaaggcccctgaggtggaccct
ctggaagaagctaattttgaacaggagcttaaggctgtaatgcaggagagcatggagcag
cgccgtcaagagctccgtggtagacctacattaaatatgatgataccaatgaatgtgttt
gaggggcccacaaaggatcatcatggaaggggaggagagagtggagacgagacattagat
gaggaagctggaggaagcaaggaggttccagtgaaagttcttgtgaagcgtggaaacaag
caacaaacaaagcagatgttgatccctcgggattgctcacttgtgcagagcacaaaacag
aaagaagcagctgagcttgaagagaaacaagacattaagaggttggtattggagtataat
gatcgagaagaggaggagcttaatggattgggtacccaaacaattaactggtcacaaggt
gggggcagcagagttgccagtcgtggtggcaacacttgggaaggaactggtagtagggct
agtggatcacgtcatcggcatcataattactcaggtggtggagtctattacagcagaaaa
aggtga
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