Castanea sativa (European chestnut): 142639293
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Entry
142639293 CDS
T11266
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
142639293
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csaa03400
]
142639293
DNA repair and recombination proteins [BR:
csaa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
142639293
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
SAWADEE
ResIII
Motif
Other DBs
NCBI-GeneID:
142639293
NCBI-ProteinID:
XP_075669608
LinkDB
All DBs
Position
6:complement(44015439..44024768)
Genome browser
AA seq
1259 aa
AA seq
DB search
MKRRNLCRNKHPFDAYPFEALFYGSWEAVELIRIVNGSMTLHFEDFQTVIQEKSPIANLR
IRSRQATLSDCTCFLRPGVDICVLSASQQGNSSDEGNQEVWADARISSIERKPHDYRCSC
QFYVNFYVNQGPLGSERGTLSKEVHLVGIDKIAILQRLERFPCEDRHYRWASSEDCSSLP
KTKLCLGRFLSDLSWLLVTSVLKHTTFDVRSVKNKVVYQILGADDDSCTTNSGNYLSAVN
LRVENDIVEPTVLKFVPAEAIEAAPACETHEAASQPFYDLMDLRRSKRRNVQPERFLGCD
SGSEIDIGYVRTRPYKIEQWKDEEMSLPLSYLFGMNASCSEEHNEVEKKVHKVHSHALRP
CEDLLLPKSKTKSKAKKSSVASKKERQTQLAIVPFRDESAPIAFEHYHHPAKSHGHHRED
MRELSSKYYYMNSFPKAQKRKISGLEDLELEASWEGKASDRKLQGRRYNSACAKRDVLSE
ERTYQKRTLSAGAYKDLINSFLKKMDTTSTKEEPQIIDQWQKFKETASLNHREMEPPQEE
DEGEMSETEMLWKEMELAMASSYLFEDNEGSEAAGSTGIMNNSSEICQHEYKLDEEIGIL
CRRCGFVSTEIRDISAPFMQYTSFNTDDKRCNEEDSAHKLEDDEGLDILHTKASSDVPLS
EENENVWALVPELRKKLHFHQKKAFEFLWQNVAGSMIPAKMEKASKKTGGCVISHTPGAG
KTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVYLIHGRRTYRVFKQ
KSAPFPGIPGGPKPTDDVMHVLDCLEKIQKWHAHPSVLVMGYTSFLTLMREDSKFAHRRY
MARVLRESPGILVLDEGHNPRSTKSRLRKVLMKVETDLRVLLSGTLFQNNFCEYFNTLCL
ARPKFINEVLRELDPKYKRKKSWRDKALHLREARARKFFLDTIAKKIDSNVGEERMNGLN
MLRNITNGFIDVYEGGSSENLPGLQIYTLLMNSTDIQHDVLVRLHRIMAEYHGYPLELEL
LITLGSIHPWLVKTAVCANKFFTMEELMELEKYKFDLKKGSKVRFVLNLVYRVVKKEKIL
IFCHNIAPVKLFLELFENIFGWRRGREVLVLTGDLELFERGRVMDQFEEPFGPSRVLLAS
ITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQKMVYVYQLLATGTLEEDKY
RRTTWKEWVSSMIFSEAFVEDPSRWQAEKIEDDILREMVEEDRHKSFHMIMKNEKASTN
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaggaatctgtgtagaaacaaacatccgtttgatgcttatccttttgaagct
cttttctatggctcatgggaagcagtggagcttatcagaattgtgaatgggtctatgacc
ttgcatttcgaggattttcagactgtaattcaggagaaaagtccaattgcaaaccttcgt
atacggtcaaggcaagctactttatctgactgcacctgctttctgagacccggtgttgac
atatgtgtgctttcagcctctcaacaaggaaatagttcagatgagggaaaccaggaggtg
tgggctgatgctagaataagttctattgagaggaaacctcatgactatcgttgttcatgt
cagttttatgttaacttctatgttaaccaaggccctctaggttcagagagaggaacactt
agtaaagaggttcacctggtaggaattgataaaattgctatcctccaaaggcttgaaaga
tttccttgtgaagatcggcactatcggtgggcttcctctgaggactgttcttcattgcct
aaaactaaattgtgtctggggagattcttatctgacctatcatggttacttgtaacatca
gttttgaagcatactacatttgatgtaagatcagtgaaaaacaaggttgtgtatcaaatt
ttgggggctgatgatgatagctgtacaacaaactctggtaattacttaagtgctgtaaat
ttaagagtagaaaatgatattgtagaacccactgtactaaaatttgttccggctgaagcc
attgaggcagctccggcttgtgaaacgcatgaagctgcatcacaaccattttatgatctt
atggacttgcgacgctctaaacgtcgaaatgtacaacctgaacgctttcttggctgtgac
agtggttcagagatagatattggctatgtccgaacgaggccatacaagatagaacaatgg
aaagacgaggaaatgtcattaccactatcctacctgtttggtatgaatgcaagctgttct
gaagagcataatgaggttgaaaaaaaggtccataaggtccattctcatgcgttacgtccc
tgtgaggatcttcttttgcccaaaagcaagactaaatcaaaagcaaaaaaatcaagtgtg
gctagtaaaaaagaacgtcaaactcaacttgctattgttccttttcgagatgaaagtgct
ccaatagcctttgaacactatcatcatcctgccaagagtcatggacatcacagagaagat
atgcgtgaactttcttccaagtattattacatgaatagttttcctaaagcacagaaaagg
aaaatttctggattagaagatttggaattagaagctagttgggaaggaaaagcgtcagat
agaaaactccaaggaagaagatataattcagcatgtgcaaaaagggatgttctaagtgaa
gaaagaacctaccagaagagaaccttaagtgctggtgcatacaaggatttaatcaattca
ttcttgaagaaaatggataccacatccacaaaagaagagccgcagatcattgaccagtgg
caaaaatttaaggaaacagcaagcttgaaccatagggagatggaaccaccccaagaagag
gacgagggagagatgtcagaaactgaaatgctgtggaaagaaatggaactagctatggca
tcaagttatctttttgaagacaatgagggttcagaagccgcagggtccactgggatcatg
aacaattcaagtgaaatttgccagcatgaatacaaattggatgaagaaattggaattctt
tgccgcagatgtggttttgtgagcactgagataagagatatttcagcaccctttatgcaa
tacaccagctttaacacagatgacaagcgatgcaatgaagaagattcagcacacaagctg
gaagatgatgagggtttggatattttacatactaaagcctcctctgatgtgcctttatca
gaagaaaatgagaacgtgtgggccttagtccctgaacttaggaagaaattgcacttccac
caaaaaaaggcttttgaatttttgtggcaaaatgttgctggatctatgataccagcaaag
atggaaaaagcttccaagaaaacgggtggttgtgttatctctcatactcctggagctggg
aaaacttttctcattatatcattccttgttagctatttgaaattgttccctggaaaacga
cccttggttcttgctccaaagaccacactctatacgtggtacaaggagtttattaagtgg
gaaattcctattccagtttatctaattcatggtcgtagaacatacagagtctttaagcag
aaatcagcaccatttccaggaattccaggaggtccaaaacccactgatgatgtaatgcat
gttttggattgcctagagaaaatacagaagtggcatgcacatccaagtgttctcgtcatg
ggttatacttcatttctaacattgatgcgggaagactcgaaatttgcacacagaagatat
atggctagagtgttgcgggaaagtccagggatattggtactagatgaagggcacaatcct
agaagtacaaaatctaggttgaggaaggttttgatgaaagttgaaactgacctgagagta
ttgctttcaggtacattgtttcaaaacaatttctgtgaatatttcaacaccctctgcttg
gcaagacccaagtttataaatgaagttttgagggaattagatccaaaatacaagaggaaa
aagagttggagagacaaagcactacatttgagagaagcccgagcaagaaagttcttctta
gatacaattgcaaaaaaaattgattcaaacgtaggagaagagaggatgaatggtctaaac
atgttgagaaatatcacaaatggatttatagatgtctatgaaggtggaagtagtgaaaac
cttcctggtttacagatatacaccttgttaatgaattcaactgacatccaacatgatgtt
ttggtgagactgcacaggataatggctgaataccatggatatccactggaattagagctt
ttgataacccttgggtcaatacatccatggttagttaaaactgcagtctgtgctaacaag
ttttttactatggaggaactaatggagcttgaaaagtacaagtttgatttgaagaagggg
tcaaaagtaaggtttgttttgaaccttgtgtatcgtgttgtcaagaaggagaagatactg
atcttttgccacaacattgcacctgttaaattgtttcttgagttatttgagaatatcttt
gggtggcggaggggtagagaagttttggtccttacaggggatttagaattatttgaacga
ggaagagtgatggatcaatttgaggaaccatttgggccctcaagagtactacttgcttca
attacagcttgtgctgaaggcattagtttgactgcagcttctcgagtgatcttactggat
tcagagtggaacccttccaagacaaagcaggctattgcaagggcttttcgtcctggtcag
caaaagatggtttatgtgtatcagctcttggcgacaggcacactggaagaagacaagtat
cgtaggacaacatggaaggagtgggtctcaagtatgatttttagtgaggcatttgtggag
gacccttcacgctggcaagccgaaaagattgaagatgatattttaagggaaatggtggag
gaggaccggcataaatcattccatatgatcatgaagaatgaaaaggcttcaacaaattga
DBGET
integrated database retrieval system
