Castanea sativa (European chestnut): 142639811 Help Entry 142639811         CDS       T11266                                  Name (RefSeq) DNA ligase 1-like   KO K10747   DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7] Organism csaa  Castanea sativa (European chestnut) Pathway csaa03030   DNA replication csaa03410   Base excision repair csaa03420   Nucleotide excision repair csaa03430   Mismatch repair Brite KEGG Orthology (KO) [BR:csaa00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     142639811    03410 Base excision repair     142639811    03420 Nucleotide excision repair     142639811    03430 Mismatch repair     142639811  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:csaa03032]     142639811    03400 DNA repair and recombination proteins [BR:csaa03400]     142639811 Enzymes [BR:csaa01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      142639811     6.5.1.6  DNA ligase (ATP or NAD+)      142639811     6.5.1.7  DNA ligase (ATP, ADP or GTP)      142639811 DNA replication proteins [BR:csaa03032]  Eukaryotic type   DNA Replication Elongation Factors    Other elongation factors     142639811  Prokaryotic type    Elongation factors (archaeal)     Other elongation factors      142639811 DNA repair and recombination proteins [BR:csaa03400]  Eukaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     Long Patch-BER factors      142639811    NER (nucleotide excision repair)     Other NER factors      142639811    MMR (mismatch excision repair)     Other MMR factors      142639811 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_A_N DNA_ligase_A_M DNA_ligase_A_C Motif Other DBs NCBI-GeneID:  142639811 NCBI-ProteinID:  XP_075670065 LinkDB All DBs Position 6:32579699..32595438 Genome browser AA seq 617 aa AA seqDB search MVRRILPPSSREPSPSPRASFSSKIPCGEGDPVSFMFLCLGFDMISKESGLIVKMYILCN VLRTVMDTTADDVLPIAYLLANRIAPAHEGLELGIGEASIITVLAEAYGRTKVGHRKLYN QLGDWGLVAKACRSSQSMMSKPNALTVTKVFNTFQLIAKKSGKDSQEKKKNHIKGLLVAA SDCEPLYLIRLLQDAILTFIGYHLGDSLILYKAFMIFYLKADPIGCIGPSCCICTFYTTS KHPVSFRRGEFLFFRSGNILQYVMYSDSVESLLCICSSKINVVEKTSLLGITFKLEVSIS LTAVKIVKKAYSVFPVYDKIVPALLSGGVWNPRLHRHAIFGDVSVSDMCRTLEPIHYIDN GSVEIYSRNAERNTGKFPDVVSEVKRLKKSSVRPFVLDCELVAYNREEQKILPFQVCVGW PWLDMNHKVLLFNCEGLIIKTLTKDATYEPAKWSLHWLKLKKDYMENLGDSLDLVPFAAF HGKGKRTGVYGAFLLACYDSTNGEYQSICKLGTGFSEADLEERSASLNSEVISGPKQYYQ YDDSVKPAPDVWFKPKEVWEVKAAGLTISPNHCAAVGIVDADKVDWIFFFNFIYIYIYIY IYIYIYIFDMFCNKHNL NT seq 1854 nt NT seq  +upstreamnt  +downstreamnt atggttcggcgaattctgccaccaagttcgcgagaacctagcccttcaccaagagcctct ttctcttccaaaatcccttgtggcgagggcgaccccgtttcttttatgtttctttgtttg ggttttgacatgatttcaaaggagtctggcttgattgtaaaaatgtatatcctgtgtaat gtgcttaggactgttatggataccactgccgatgatgtattgccaattgcgtatcttttg gctaataggattgccccggcgcacgaggggttggagcttggaattggggaggcttcgatc attactgtgcttgctgaggcttatgggaggactaaggtggggcatagaaaactgtacaat caattgggagactggggtcttgttgcaaaagcttgtcgttcatctcaatctatgatgagc aagcctaatgccttaactgttaccaaggtttttaataccttccaactcattgctaagaaa tcggggaaggatagtcaagagaagaaaaaaaaccatatcaaggggctacttgttgctgct tccgattgtgagcctctatatctaattcgtctacttcaggatgcaattctgacatttatc ggatatcaccttggtgactcccttattctatataaagcttttatgatcttctatttaaaa gcagaccctattggctgcattgggccaagctgctgtatatgcacattctacaccacctcc aaacatccagtctcctttagaagaggtgagtttttgttctttagatctggaaacattcta cagtatgtcatgtattctgatagtgtggaaagccttttgtgtatatgttcatctaagata aatgttgtagaaaagacatcacttttaggcataacatttaagcttgaagtgtccatatcg ctgacagctgtgaagattgttaaaaaagcatactctgtatttcctgtctatgataaaata gtccctgcgcttcttagtggcggtgtgtggaatcctaggttgcaccgacacgccattttt ggcgacgtgtcggtgtccgacatgtgtcggacactggaaccgatacattacattgataat ggttcagttgagatatatagtcgaaatgctgaacggaacactggaaagtttcctgatgtt gtgtctgaagttaaaaggttaaagaagtcatctgttagaccatttgttctagattgtgaa cttgttgcttataaccgtgaagaacagaaaattcttcccttccaggtatgtgttggctgg ccatggttggacatgaatcataaggttttattattcaactgtgagggtttaattatcaaa acattgaccaaagatgctacatatgagcctgcaaagtggtcacttcactggctaaaattg aagaaagattacatggaaaatttaggggactcactagatttggtaccttttgctgctttc cacggcaaggggaagcgtacaggtgtctatggtgcctttctccttgcttgttacgacagc acgaatggagaatatcaaagcatttgtaaattaggcactggattttccgaagcagatctt gaagaacgttctgctagtctcaattctgaagtgatttctggaccaaagcagtactaccag tatgatgattcagtgaagccagccccagatgtatggtttaaacccaaggaggtctgggag gtgaaagctgcaggcttgaccattagccctaatcattgtgctgcagttggcatagtggat gctgataaggttgattggatttttttttttaattttatatatatatatatatatatatat atatatatatatatatatatatttgacatgttttgtaataaacacaatctataa

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