Castanea sativa (European chestnut): 142640824
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Entry
142640824 CDS
T11266
Name
(RefSeq) elongator complex protein 1 isoform X1
KO
K11373
elongator complex protein 1
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csaa03016
]
142640824
Transfer RNA biogenesis [BR:
csaa03016
]
Eukaryotic type
tRNA modification factors
Elongator complex
142640824
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_ELP1_1st
Beta-prop_ELP1_2nd
A-sol_ELP1
TPR_ELP1
HB_ELP1
Beta-prop_WDR19_1st
TPR_GEMI5
Motif
Other DBs
NCBI-GeneID:
142640824
NCBI-ProteinID:
XP_075671222
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Position
6:47840440..47847277
Genome browser
AA seq
1314 aa
AA seq
DB search
MKNLKLYSELCSKLQLQSNEEVALFFAHDIERSRFFFASSANLIYTIHLSSFQNERTWGK
ASLPAEVDSIDLEPNDYITAFEYHMEKEALIVGTCSGLLLQHSVDDNGTEVVGRVEGGVR
CISPSPDGDLLAVMTGLGQALIMTNDWDLLYETMVEELREGVDVTEPTLSSTNESPISWR
GDGKYFATLSEVCDSTSLLKRIKIWERDSGALHATSESKAFMGSAIEWMPSGAKIAAVYD
RKAANECPSIVFFERNGLERSSFGINEKINATIEMLRWNCTSDLLAAIVRCEKHDSVKIW
FFSNNHWYLKFEIRYLRQDGVRFMWDPAKPLQLICWTLGGHITIYNFIWNTAVMENSLAL
VIDDSEIHVTPLSVLLMPPPMYLFTLKFPSAVRDISLYSKNSKNRLAAFLSDGSLCVVEL
PAPDTWEELEGKQFVIEASISESVFGSFVHLLWLDSHILLAVSHYGFNHYLSSTLSNEGE
LLGYYLQEIELVCSEDHVPGLLTCSGWHAKISYQNSLEGLIIGTASNPTKLCSAFIQFDG
GKIFEYTTRMGALKHDDMSFSSSCPWMNVVSVRDNGSLKFLPFGLDVIGRLHVGGRILCN
NCNSFSSYSNLADQVITHLILSTKQDLLYIVEISDILHGELDPKYENFIHTPNRRREENK
NFINIWERGAKIIGVLHGDKAAVILQTTRGNLECIYPRKLVLASIINALVQGRFRDALLM
VRRHRIDFNIIVDHCGWQAFLQSAAEFVRQVSNLNYITEFVCAIKNENITERLYNDLVSL
PCSKDAKDVQARDSMGLGDNNKVSSVLLAIRKALEEQLPESPARELCILTTLARNDPPAL
EEALERIKVTREMELSGSNDPRRISYPSAEEALKHLLWLSDSEAVFEAALGLYDLNLAAI
VALNSQRDPKEFLPFLQELEQMPAVLMRYNIDLRLLRFRNALKHIVSAGDAHFEDCMNLM
EKNPQLFPLGLQLITDPPKRKQILEAWGDHLNDEKCFEDAATTYLCCSSLEKALKSYRAC
GNWSGVFTVAGLLKMGKDEIMQLAHELCEELQALGKPGEAARIALEYCEDVNGGLNLLIS
AREWEEALRVAFMQRREDLISEVKNASLECASMLIGEYKEGLEKVGKYLTRYLAVRQRRL
LLAAKIQSEERSMSDLDDDATSEASSNFSGMSAYTTGTRKSTASSIISSAASKARDTRRQ
RKRGKIRPGSADEEFALVEHLKGMCLTAGAKIELKSLLVSLVMLGEEETARKLQCAGENF
QLSQMAAVKLAEDTMSTNIINEHAHSMERYVKKLTSEVKDSEAFNWRSKIFLSP
NT seq
3945 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaacctgaagctgtactcggagctctgttcgaaactccagcttcaatccaatgaa
gaagtcgctctcttctttgcacacgatatcgagcggagccgcttcttcttcgcttcttcc
gccaatctcatctacaccatccacctctcttcattccaaaatgagaggacgtggggaaaa
gcttcattgccagcggaggttgattctattgatttggagcctaatgattacataacggcc
tttgagtatcacatggagaaagaagcgctgatagtggggacttgtagtgggcttttgttg
cagcacagtgtggatgataatggaaccgaagtggttggtagagtggagggtggggtcagg
tgcatctcacccagtcctgatggagatttgctcgccgtaatgacgggtcttgggcaggca
ctgattatgacaaacgattgggatttgctgtacgagaccatggtagaggaattacgtgaa
ggtgttgacgtaactgaacccactctttcttctacgaacgagagtcccatatcttggcga
ggtgatgggaagtactttgctacgctaagtgaggtttgtgattctactagcttgcttaag
aggattaagatatgggaacgggattctggggcgttgcatgctacttcagaatcaaaggca
tttatgggatcagctatagaatggatgccaagtggagcgaaaattgcagctgtttatgat
aggaaagcagctaatgagtgtccctcaatagttttctttgagaggaatgggttagaaaga
agctcttttggcatcaatgagaaaatcaatgcaacaatagaaatgctgaggtggaattgc
acttcagatcttcttgcagccattgtcagatgtgaaaaacatgactctgtgaagatctgg
tttttcagcaataatcattggtacttaaagtttgaaattaggtacttaaggcaggatgga
gtgaggttcatgtgggacccagcaaaaccgttgcagttgatttgttggactcttggtggc
catatcacaatttacaacttcatctggaatacagctgtcatggagaactcattggcatta
gttattgatgactctgagatacatgtgactcccctttctgtgttgcttatgccgcctcct
atgtatctattcactctgaaatttccaagtgctgtccgagacatatctttatattctaag
aattccaagaaccgtttagctgcttttttatcagatggttctttgtgtgttgtagagctt
cctgcacctgatacttgggaagaactagaaggcaaacaatttgtcattgaagcttccatt
tctgaatcagtttttggatcttttgttcatctcttatggttggattcacatatacttctt
gctgtttcacattatgggtttaatcattacttgtccagtaccttatcaaatgagggcgag
cttcttggctattatctgcaggaaattgagcttgtatgttctgaggatcatgttccaggc
ttactgacatgctcaggctggcatgcaaaaatttcctatcaaaactctctagaaggactg
attattggcactgcttccaacccaaccaaactatgttcagcgtttattcagtttgatggt
ggaaaaatatttgagtatacaaccaggatgggagctttgaaacatgatgatatgagtttc
tcatcatcttgcccttggatgaatgtggtttcagttcgtgacaatggatcattgaagttt
ttgccttttggacttgatgtcattggcaggttgcatgttggtgggaggatattatgcaac
aattgcaacagtttctcgtcttactctaatttggctgatcaagtgatcacacatttaatt
ctttcaactaaacaggacttgctctatattgttgaaattagtgatatattgcatggagaa
ttagacccaaaatatgagaacttcatccacactcctaataggagaagagaagaaaataaa
aacttcataaatatatgggaaagaggtgccaaaattattggtgtcctgcatggagataaa
gctgctgtcatattacaaacaactcggggaaaccttgaatgcatttatcccagaaaattg
gtcttggcctcaatcatcaatgcattggtccaagggcgcttcagagatgcattactcatg
gtgagacggcataggatagatttcaacatcattgttgaccattgtggttggcaagcattt
ctccaatcagctgcagagtttgtcaggcaggttagcaatttgaactacataactgagttt
gtttgtgccataaagaatgagaatatcacagagcgactatacaatgatttggtatcttta
ccctgctcaaaggatgctaaagatgtacaagctagagattcaatgggtcttggtgataat
aacaaggtttcttctgtccttctggccataaggaaggctcttgaggaacaactaccagaa
agccctgcaagggagctttgcatcttgaccactcttgctcgtaatgatcccccggcactt
gaagaagctttggagagaataaaagttacccgtgaaatggaattatcaggttctaatgac
cctagaagaatatcttacccttctgctgaggaggctctgaagcatctcttgtggttatct
gattctgaggctgtatttgaggctgctttaggcctttatgatttgaaccttgcagctatt
gtggcattgaactctcagcgggatcctaaagaatttcttcctttccttcaagagttggaa
caaatgccagctgtcttaatgcgctacaatattgaccttaggctgctcaggtttaggaat
gctcttaaacacattgtttctgcaggtgatgctcattttgaagattgtatgaacctcatg
gagaaaaatcctcagctttttccactgggacttcagcttatcactgatcctccgaagagg
aagcaaatccttgaggcctggggagatcatctcaatgatgaaaaatgttttgaggatgca
gctacaacttatttgtgttgttcaagtttggaaaaggctttgaagtcatatcgtgcttgt
ggtaattggagtggagtgtttacagttgctgggctccttaagatgggaaaagatgagata
atgcaactggctcatgagctttgtgaagaacttcaagctcttggtaaaccaggggaggct
gccagaattgctctggagtactgtgaagatgttaatggggggctgaatttgttgattagt
gcaagggagtgggaggaggctttgagggttgcatttatgcagaggagagaggatttaatc
tcagaagtgaagaatgcatctttggaatgtgcaagtatgttgataggtgaatacaaggaa
ggcttggagaaagtagggaagtatctgactcgctacttagctgttcgacagagaagatta
cttcttgctgcaaagatccagtcagaggaacggtcaatgagtgatcttgatgatgatgca
acttcagaggctagcagtaatttcagtggaatgagtgcttacactacagggaccaggaag
agcactgcatcttccatcatctcaagtgcagctagcaaggccagagacaccagacgccag
agaaaaagaggaaaaattcgtcctggaagcgctgatgaggagtttgctctggtggagcat
ttgaagggcatgtgtctaacagctggggcaaagattgagcttaaatctttactggtttcc
ctcgtgatgcttggtgaggaagaaactgcgaggaagctgcaatgtgcaggagagaacttt
caactgtctcaaatggcagcagttaaactagctgaagatacaatgtccactaatatcata
aacgagcatgcacattcaatggagcgctacgtaaaaaagttgacaagtgaagtgaaagat
tcagaggctttcaattggcggtctaaaatatttctttctccttaa
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