KEGG   Castanea sativa (European chestnut): 142640935
Entry
142640935         CDS       T11266                                 
Name
(RefSeq) THO complex subunit 3
  KO
K12880  THO complex subunit 3
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03013  Nucleocytoplasmic transport
csaa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    142640935
  09122 Translation
   03013 Nucleocytoplasmic transport
    142640935
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142640935
   03041 Spliceosome [BR:csaa03041]
    142640935
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     142640935
Spliceosome [BR:csaa03041]
 Complex C
  Other components
   EJC/TREX
    142640935
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    142640935
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR5 WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_1st Beta-prop_EML_2 ANAPC4_WD40 EIF3I WDR55 Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR19_1st Beta-prop_RIG_2nd Beta-prop_NOL10_N Beta-prop_TEP1_C Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st Beta-prop_Vps41 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd DSE1_N eIF2A Beta-prop_WDR75_1st NBCH_WD40 WD40_RFWD3 Beta-prop_WDR35_TULP_N Beta-prop_DCAF12 Beta-prop_EML Beta-prop_IFT140_1st Beta-prop_EIPR1 Tricorn_2nd Beta-prop_HPS5 WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_IFT80_2nd TRM82_WD PAC11 Beta-prop_Nup120_160 Beta-prop_WDR41 DUF7099 CNH WD_LRWD1 TP_0598_N Beta-prop_ACSF4 Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 142640935
NCBI-ProteinID: XP_075671374
LinkDB
Position
6
AA seq 316 aa
MEGTSTAVPFKNLHSREYQGHKKKVHSVAWNCTGTKLASGSVDQTARLWHIEPHGHGKVK
DIELKGHTDSVDQLCWDPKHGDLIATASGDKTVRLWDARSGKCSMQTELSGENINITYKP
DGTHIAVGNRDDELTILDVRKFKPIHKRKFSYEVNEIAWNMTGEMFFLTTGNGTVEVLAY
PSLRPVDTLVAHTAGCYCIAIDPVGRYFAVGSADSLVSLWEISEMLCVRTFTKLEWPVRT
ISFNYTGDYIASASEDLFIDISNVHTGRTVHQIPCRAAMNSVEWNPKYNLLAYAGDDKNK
YQADEGVFRIFGFESP
NT seq 951 nt   +upstreamnt  +downstreamnt
atggagggaacaagtacagcagtaccattcaagaacctccatagccgagagtatcaaggt
cacaagaagaaggtgcattcggtggcttggaattgcaccggcacaaagctcgcttccggt
tccgtcgatcaaaccgctcgactttggcacattgagccacacggccatggtaaggttaag
gatattgaattgaagggtcacactgatagtgtagatcagctgtgttgggatcccaaacac
ggcgatctaatcgctactgcatcaggtgacaagactgttcgtttgtgggatgctcgaagt
ggaaaatgctcaatgcagacagaactcagtggggagaacattaacatcacttacaaacct
gatggtacacacatagctgttggtaatagggatgatgaattaacaatactggatgttcgg
aaatttaaaccaattcataagcgcaagttcagttatgaggtaaatgagattgcgtggaac
atgacaggggagatgttcttcttgacaactggaaatggtactgttgaagtactagcatac
ccatctctgcgaccagttgacaccctcgtggctcatacagctggttgctattgtatagca
attgatccggtgggaagatattttgctgttggaagtgctgattccttagtaagcctgtgg
gagatatcggagatgctgtgtgtgcgaacatttacaaaacttgaatggcctgtccgtaca
ataagctttaattacactggagattatattgcttctgccagtgaagacttgtttattgat
atatcaaatgttcatactggacgaacagtgcatcagataccatgtcgggccgctatgaac
agtgtggaatggaatcctaagtacaatttactcgcgtacgctggggatgacaagaacaaa
tatcaggctgatgaaggtgtttttagaatatttggctttgaaagcccctaa

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