Castanea sativa (European chestnut): 142640981
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Entry
142640981 CDS
T11266
Name
(RefSeq) nuclear cap-binding protein subunit 2
KO
K12883
nuclear cap-binding protein subunit 2
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142640981
09122 Translation
03013 Nucleocytoplasmic transport
142640981
03015 mRNA surveillance pathway
142640981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142640981
03041 Spliceosome [BR:
csaa03041
]
142640981
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
142640981
Spliceosome [BR:
csaa03041
]
Common components
Common spliceosomal components
Cap binding complex
142640981
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
DUF5721
Motif
Other DBs
NCBI-GeneID:
142640981
NCBI-ProteinID:
XP_075671441
LinkDB
All DBs
Position
6:38176844..38183570
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AA seq
251 aa
AA seq
DB search
MASLFKDPKKLSAYRDRRFTGSQEDFEHALLTSITVYVGNMSFYTTEEQVYELFSRAGEI
KKIIMGLDKNTKTPCGFCFVLFYSRDDAEDAVKYISGTILDDRPIRVDFDWGFQEGRQWG
RGRSGGQVRDEYRTDYDPGRGGYGKLVQRELEAQRQLVDYGAGSLGSFPPVMPPQYGRHG
GSHGHGGSYRRDYQRKRHRDDDRHGHETSKRISDHESRRSSDHDSRPEKNPRFRESGDSD
DDEEDDRKRRS
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctctgttcaaggatccaaaaaagctttcagcatatagggatagaaggtttact
ggatcacaagaagactttgaacatgcactcctgacatcaataactgtctatgtggggaat
atgtccttttatacaacagaagagcaagtttatgagcttttctcccgagctggagaaatt
aaaaagataattatgggcttggataagaacacaaaaacaccttgcggcttttgttttgtc
ttattctactctcgagacgatgctgaggatgctgtcaaatatataagtggcacaattctc
gatgatcgccctattcgtgtagattttgactgggggttccaagaaggaaggcaatggggc
cgtgggcgaagtggtgggcaggtgcgtgatgaatatcgaactgattacgatcctggtaga
ggaggttatgggaagttagtacagagagagctggaagcacaaaggcagcttgtagattat
ggtgctggttccttgggctctttcccaccagttatgccacctcagtatggtagacatggt
ggaagccatggtcatgggggatcttatcgtagagattaccaaaggaagcgacaccgagat
gatgaccgccatgggcatgagacctcaaagagaatctcagatcatgaatccaggagaagt
tctgatcatgactcgagaccggaaaagaatccccgattccgagagagtggtgactctgat
gatgacgaggaagatgatcggaagcgacgatcctag
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