Castanea sativa (European chestnut): 142641225
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Entry
142641225 CDS
T11266
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
csaa Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
csaa03009
]
142641225
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142641225
Ribosome biogenesis [BR:
csaa03009
]
Eukaryotic type
Pre-60S particles
Helicases
142641225
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
142641225
NCBI-ProteinID:
XP_075671741
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All DBs
Position
6:complement(43883887..43889519)
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AA seq
591 aa
AA seq
DB search
MDSVSPSQSSALTKTRFSDLNPSLFESILEALTQAGFEFCTPVQAATIPLLCSYKDVAVD
TATGSGKTLAFVVPLVEILCRNKTPPKPNQVMGVIISPTRELSSQIYDVAQPFVSTLPNF
KSMLLVGGVEVKADLKKIEEEGANLLVGTPGRLFDIMERVDGLDFRNLEILVLDEADRLL
DMGFQKQITSIITRLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAEMKSSNGPTS
SEQSGFSKTPSGLHNEYMECEGDKKPSQLVDFLIKNRSKKIIIYFMTCACVDYWGVVLPC
LPVLKGLSLISLHGQMKQTAREKALASFKDLSSGILLCTDVAARGLDIPDVDCILQYDPP
QNPDVFLHRVGRTARMGRQGSAIVFLLPKEEAYVEFIRIKWGALEERKCSDDAPDVVPQI
RSAAKKDRDVMEKGVRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMSEIK
HHSLSTVGFSPVEDINFEDIKFKDKSREKQRKKNLQAKKEAKQQEPKPHKLNKTPKAAAT
VTRKKTARQRRATQTVEDEDELAREYRLLKKLKKGAIDESEFARLTGTEDL
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atggattccgtctcccccagccagagcagcgcgctaaccaaaacgcgcttctccgatctc
aacccctcactcttcgaatcgattctcgaagccctaacccaagccggcttcgagttctgc
acgccggtccaagccgccacaatccccttactctgtagctacaaagatgtcgccgtcgac
accgccaccggctctggcaaaaccctagccttcgtggtcccactcgtcgagatcctctgc
cgcaacaaaactcctcctaaaccaaaccaggtgatgggagtaattatatcgcctacgagg
gagttatcgtcgcagatatatgatgtggcgcagcctttcgtttctacgctgccgaatttc
aagtccatgttgcttgttggaggagtggaagtgaaagcggacttgaagaaaatagaggag
gaaggagctaatttattggtcggcacgcccgggagattgtttgacattatggaacgtgtt
gatggtttggattttcggaacctcgagattttggttttggatgaggccgacaggctcttg
gatatgggtttccagaagcagataacttccatcataactcgcttgccaaagcttcgtaga
actggtcttttttcagctactcagactgaggcagttgaagagctgtctaaagcagggttg
aggaatcctgtgagggttgaagttcgggcagaaatgaaatcttcaaatggtccaacatcg
tcagaacaatcaggcttttcaaaaacaccttcaggccttcacaatgagtacatggaatgt
gaaggagataagaaaccatcacagcttgttgatttccttatcaagaacaggtctaaaaag
attataatatacttcatgacatgtgcttgtgttgactactggggagttgttcttccatgc
cttcctgttttgaagggtttgtctttgatctcgctgcatggccagatgaagcagactgca
agggaaaaagcattagcttcatttaaagatctttcgagtggtattcttctatgtactgat
gttgcagcacgaggacttgacattccagatgttgattgtatacttcagtatgatcctcct
caaaatccagatgttttcttacacagagttggccgaactgctcggatgggtagacaagga
agtgccattgtttttctattgccaaaggaggaagcttatgtagagttcatacgtataaaa
tggggtgcccttgaagagaggaaatgctctgatgatgcacctgatgttgttcctcagatc
cggtctgctgccaaaaaggaccgtgatgtcatggagaaaggtgtcagggcatttgtttca
tatatccgtgcatataaagagcatcattgctcttacattttcaggtggaaagagcttgaa
attgggaagttggccatgggatatggcctattgcagcttccctccatgtccgagataaag
caccactcactttctactgtgggcttctctccagttgaagacatcaattttgaggatatc
aagtttaaagataagtctcgtgagaaacaaagaaagaagaatctgcaagcaaagaaggaa
gcaaaacagcaagagccaaaacctcacaaactcaacaaaaccccaaaggctgcagctact
gtcacgaggaagaaaacagctagacagagacgtgctacccaaacagttgaagatgaagat
gagttggcacgagaataccgtctgctgaaaaagctgaaaaagggggctattgatgaaagt
gagtttgctaggttgacaggaactgaagatttatag
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