KEGG   Castanea sativa (European chestnut): 142642600
Entry
142642600         CDS       T11266                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
csaa  Castanea sativa (European chestnut)
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:csaa03009]
    142642600
Ribosome biogenesis [BR:csaa03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    142642600
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 EIF3I Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 NBCH_WD40 Beta-prop_EML Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_HPS5 Beta-prop_DCAF4 ANAPC4_WD40 WD40_MABP1-WDR62_2nd Beta-prop_IFT140_1st Beta-prop_IP5PC_F WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_Vps41 Beta-prop_IFT122_1st Beta-prop_WDR19_1st Beta-prop_WDR75_1st Beta-prop_BBS7 Beta-prop_WDR75_2nd WDR54 Beta-prop_SCAP Beta-prop_LRRK2 WD_LRWD1 Beta-prop_SPT8 Beta-prop_Nup120_160 Ge1_WD40 PEP5_VPS11_N Beta-prop_NUP159_NUP214 ELYS-bb DUF4363
Other DBs
NCBI-GeneID: 142642600
NCBI-ProteinID: XP_075673113
LinkDB
Position
1:4313095..4317932
AA seq 448 aa
MEVVVASSSIDGGIGCWDIHTGAEQLRYKTCVSPPHGLACVGQRFLASSQLRDPSANSGC
ILYWSWSKPQVEVKSFPSEPIQPVAANREGTYIVGGGVSGDIYLWEVATGRQLRKWNAHY
RAVTCLVFSDDDSLLISGSEDGSVKVWSLFMIFDDLRRQRSDHLYEHNFSEHTLRVTDIV
VGYGGSNAIIVSASADRTCKVWSLSKGKLLRNIVFPSIIDAIVLDPGEHVFYAGSRDGKI
YVAALSAESTSKSNYGLHIINSLSNHSKAVTCLAYCARGNLLLSGSDDGMVRVWDAKTHN
IVRVLKHAKGPVNNILVVRPELNFNFRPNSQASSRRHGSLLPPALDKYRNPTDEDADTTT
LIGLQSTCRKSMDPSYFSSHVINNQIKELQQQGSSAAAEMEMERLKLECTRSRQMIQQWK
KTYENLHQFCVNELLDSDQAGIPNGNST
NT seq 1347 nt   +upstreamnt  +downstreamnt
atggaagtagtggtggcttcttcttccatcgacggcggcatcggctgctgggacatccat
accggcgcggagcaactccgctacaagacttgcgtctctccgcctcatggcctcgcctgc
gtgggccaacgcttcctcgcctcttctcagctccgtgatccctccgccaactctggctgc
atcctctactggtcttggtctaagcctcaagtagaagttaagagctttccttcggaacca
atacagccagtcgctgctaaccgcgaaggcacgtacattgttggtggaggcgtatctggt
gatatttacttgtgggaggttgccactggtagacaacttaggaaatggaatgctcattat
agggctgttacttgcttggtgttttccgacgatgactcactgctaatttctggttcggag
gatggatccgttaaagtttggtccctcttcatgatatttgatgatttgagacgtcagcga
tctgatcatctatatgagcacaatttttcagagcacactttgcgtgtaactgatattgta
gtcggatatggaggaagcaatgccattatagtatcagcttctgcggatcgaacttgtaag
gtgtggagcttatcaaagggaaaattattaagaaatatcgtattcccttcaataattgat
gcaattgtacttgatcctggcgaacatgtcttctatgctggcagtagagatggcaagata
tacgttgctgcacttagtgctgaaagcacctctaaaagcaactatgggttgcatatcata
aattcattatcaaatcacagcaaggctgttacttgcttagcatattgtgcacgtggaaat
cttttactttctggatcagatgatggtatggtacgagtttgggacgctaaaactcacaac
attgttcgtgttctcaagcatgcaaaaggtcctgtaaacaatattcttgttgttagacca
gagctcaactttaattttcggccaaattcacaagcttcctcaagaagacatgggtcattg
ttaccacctgcgctggataaatatcggaatccaacagatgaagatgcagacactacgact
ctcattggtctccagtctacttgcaggaaatcaatggatccttcatacttcagttcgcat
gtgataaataatcaaatcaaagaacttcagcaacaaggttcttctgctgctgctgaaatg
gagatggaaagactaaagcttgagtgtacaagatctaggcaaatgattcagcagtggaag
aaaacgtacgaaaacttgcatcaattctgcgtaaatgaacttttggacagtgatcaagca
ggaattcccaatggaaactccacctaa

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