Castanea sativa (European chestnut): 142643027
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Entry
142643027 CDS
T11266
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
csaa03015
mRNA surveillance pathway
csaa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142643027
09122 Translation
03013 Nucleocytoplasmic transport
142643027
03015 mRNA surveillance pathway
142643027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142643027
03041 Spliceosome [BR:
csaa03041
]
142643027
03009 Ribosome biogenesis [BR:
csaa03009
]
142643027
03012 Translation factors [BR:
csaa03012
]
142643027
Enzymes [BR:
csaa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142643027
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142643027
mRNA cycle factors
Stress granule specific factors
142643027
Spliceosome [BR:
csaa03041
]
Complex C
Other components
EJC/TREX
142643027
Ribosome biogenesis [BR:
csaa03009
]
Eukaryotic type
90S particles
Helicases
142643027
Translation factors [BR:
csaa03012
]
Eukaryotic type
Initiation factors
eIF-4
142643027
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
CMS1
NAT10_TcmA_helicase
Motif
Other DBs
NCBI-GeneID:
142643027
NCBI-ProteinID:
XP_075673667
LinkDB
All DBs
Position
7:18509248..18515916
Genome browser
AA seq
409 aa
AA seq
DB search
MSDLGGASMVRQNPRRVTAPEEALEFETSKEVQVVTSFADMGIKDDLLRGIYQYGFEKPS
AIQQRAVVPILQGRDVIAQAQSGTGKTSMIGLTVCQTVDTTSREVQALILSPTRELASQT
EKVILAMGNFISIKVHACIGGKSVGDDIRKLENGVQVVSGTPGRVCDMIKRRTLKTTHIK
LLILDESDEMLSRGFKDQIYDIYRYLPPVLQVCLISATLPHEILEMTNKFMTDPIRILVK
RDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNF
TVSSMHGDMPQKERDAIMEEFRAGQTRVLITTDVWARGIDVQQVSLVINYDLPNNRELYI
HRIGRSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgtcagacctcggcggcgcaagcatggtccgccaaaacccacggcgggtgacggcgccg
gaggaggcgctggagttcgagacctcaaaggaggtccaggtagtaaccagcttcgcagac
atgggaatcaaagacgacttgctccgcggcatctaccagtatggcttcgagaagccctcc
gcgattcagcagcgcgccgtggttcccattctccagggccgggatgtcatcgctcaggct
cagtccggtaccggaaaaacctccatgattggcctcaccgtttgccagaccgtcgataca
accagcagagaggtccaggccttgatcttgtcaccaacaagagaattggcatctcagaca
gagaaggtgatattggcaatgggtaatttcataagtattaaagtacatgcatgcattgga
ggcaagagtgtgggtgatgatatcagaaagctagaaaacggtgttcaggtggtgtctgga
actccaggcagagtttgtgacatgatcaaaaggagaacactgaaaactacacacatcaaa
ttgttaattcttgatgaatctgatgagatgttgagcagagggttcaaggatcagatttat
gatatatacagatatctgccaccagtgcttcaggtttgcttgatttctgctacccttcct
catgaaattttggagatgacaaacaagtttatgacagatcctatacggatacttgtgaaa
cgtgatgagttgactctggagggcatcaaacaattttttgttgccgtggaaagggaagag
tggaagtttgatactttatgcgatctttatgatacccttacgatcacccaagctgtcata
ttctgcaacacaaagagaaaggtggattggctaacagaaaagatgcgtagcaataacttc
actgtttcatcaatgcatggagacatgcctcaaaaggagagagatgcaattatggaagag
tttcgggctggtcaaacccgtgtcctaataacaacagatgtttgggccagggggattgat
gtccaacaggtttctttggtgatcaattatgacctcccaaacaatcgtgagctttacatt
catcgtattggtcgctctggtcgttttggaagaaagggtgttgcaataaactttgtcaaa
agtgatgatattaaaatcctacgagacattgagcagtactacagtactcagattgatgaa
atgccaatgaatgttgctgatctaatataa
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