KEGG   Castanea sativa (European chestnut): 142643272
Entry
142643272         CDS       T11266                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
csaa  Castanea sativa (European chestnut)
Pathway
csaa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:csaa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    142643272
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csaa03019]
    142643272
   03036 Chromosome and associated proteins [BR:csaa03036]
    142643272
Messenger RNA biogenesis [BR:csaa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     142643272
Chromosome and associated proteins [BR:csaa03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     142643272
    COMPASS/SET1 complex (yeast)
     142643272
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 WDR55 Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 ANAPC4_WD40 WD40_Gbeta Beta-prop_WDR3_2nd EIF3I Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_Aladin Beta-prop_WDR36-Utp21_1st WDR90_beta-prop_4th Beta-prop_TEP1_C Beta-prop_SPT8 Beta-prop_EIPR1 Beta-prop_NOL10_N Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_1st WD40_RFWD3 NBCH_WD40 TRM82_WD PAC11 Beta-prop_ACSF4 WD_LRWD1 Beta-prop_VPS8 PD40 Beta-prop_SCAP DUF4221 YonK Tricorn_2nd
Other DBs
NCBI-GeneID: 142643272
NCBI-ProteinID: XP_075673934
LinkDB
Position
1:complement(66456518..66462586)
AA seq 345 aa
MNMLTELDDDTVRTMSIGAVFSDFVGKINSIDFHRKEDLLVTASEDDSVRFYDIANAKLV
KTTYHQKHGADRICFTHHPSSVICSSRYNLESTGESLRYLSMYDNRCLRYFKGHKERVVS
LCMSPINDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPTVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVCDIKFSNDGKSMLLTTTNNNIYVLDAYGGEKRCGFS
LEPSPTANIEATFTPDGQYVVSGSGDGTMHAWSINRRNEVASWNSHIGVASCLKWAPRRA
MFVAASTVLTFWIPDNSKLNADPASASASISMDTEAPTQSELTSQ
NT seq 1038 nt   +upstreamnt  +downstreamnt
atgaatatgcttacggagctcgacgacgatacggtgcgcaccatgtccattggagctgta
ttttcagacttcgttgggaagataaattcaattgattttcataggaaggaagatttactt
gttacggccagtgaggatgattctgtgcgattctatgacattgctaatgctaagttggtg
aagaccacatatcatcagaagcatggtgctgatcgtatatgctttacccaccaccctagc
tctgttatatgttcttcaagatacaatttggagtccactggagaatccctgcggtatcta
tcaatgtatgataatcggtgccttcgttacttcaaagggcataaagagagagtcgtttcc
ctctgcatgtctccaatcaatgatagcttcatgtccggttctcttgatcacagtgttaga
atatgggatcttcgtgtaaatgcttgccaggggattcttcgcttgcgtggtagacctaca
gttgcatatgaccaacaaggccttgtttttgctgtggcaatggaagggggtgctattaaa
ttgtttgattcacgttcctatgacaagggtccctttgacacctttttagttggtggagat
actgctgaggtttgtgatatcaaatttagcaacgatggaaaatcaatgctattgacaacg
actaataacaacatatatgttcttgatgcatatggaggagagaagcgttgtgggttcagt
ttggaaccatctccaactgcaaatatagaggcaacatttacgccagatggccagtacgtg
gtctcaggctcaggagatggaaccatgcatgcttggagcataaacaggcgaaatgaggtg
gcaagctggaacagccacattggtgtggcatcgtgcttaaagtgggctcctcgtagagcc
atgtttgttgctgcatcaactgttctcacgttttggatacccgacaattccaagttaaat
gctgaccctgcttctgcttctgcttctatatctatggacactgaagctccaacccaatcc
gaacttacatctcaatga

DBGET integrated database retrieval system