Castanea sativa (European chestnut): 142643352
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Entry
142643352 CDS
T11266
Name
(RefSeq) uncharacterized protein LOC142643352 isoform X1
KO
K14311
nuclear pore complex protein Nup188
Organism
csaa Castanea sativa (European chestnut)
Pathway
csaa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
csaa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142643352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csaa03019
]
142643352
Messenger RNA biogenesis [BR:
csaa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
142643352
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Other DBs
NCBI-GeneID:
142643352
NCBI-ProteinID:
XP_075674033
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Position
7:40095664..40119188
Genome browser
AA seq
1963 aa
AA seq
DB search
MATTTKSVDASLWWDPFSLLLTDLENASLSSDLPPNLAKKLKENRGWFVDTVSRFKSPNQ
KSKEALNSETVKIGDRQLTIQPELKEKALRISSYLALDEVQTYILVERTLKDKNLGADSI
VQEYLHVILLQYYMERQCLLKCTRRILMHALYVGTGSKEGQIIREEVLKLISDGLERKSI
SLLEDLLSSSHPEQMDVDLFTLWAEETLIEDNLVLDILFLAYYESFCTCDGGSWKKLCSL
YKGILSGTCNFGKLAISTEAVHYSHHAKIQLLLILIETLDLEILLQMVHDEMPFRNGFSV
FTLTDVQEIDALISSFNVFELKDSGPLILAWAVFLCLISSLPGKEENNVLMEIDHVGYVR
QAFEVESLNYFLEILQSDILKESDGPVAGYRSVLRTFISAFIASYEINLQMGDSTLNLIL
DILYKIYRGEESLCIQFWDKESFIDGPIRCLLCNLEGEFPFRTVELVRLLSSLCEGTWPA
ECVYNFLDKSVGISSLFEIRSDSLVDNVSQIVETHLPVHVPGVEGLLIPSKTRGHVLKMI
GGNTALVRWEYTQSGVLVLLLRLGQDLYPDKSEEIFLTLDLLCRMVSFNTDVCFSLMETG
SLLHVPETGMTATLEKNVWAVEIICTLVRNLSPNSNSAALMSMGVKILGKLLKCSPSHVS
AAALKANIFDLVLETSIRDIGSNSSSSGSWLLSGKLAKMLLIDCEQNDNDHPLAISVLDF
TMQLVETGLEDDSLLALIVFSLQYVLVSHEYWKYKVKYVRWKITLKVLEVMKKCILLVAY
YERLGDIIQDMLLCDSSIHGTLFRIICTTKQSLENLYVSRLFELMEIEGLQLAIGSVLDI
LFIMLSKFSKDVSSSLSVFHQAVLSCTTKPVPVVDAVTSLISYFRSPAIQVGAARVLSVL
LIMADYLQQYLVGSACLRLDDKQITDLRHSISYILLKQSVCNEDLFVATVNVLTSAAHYQ
PAFLVDVFGAKESTGVQDSNVDSLKQTAKEAGSQGCKNSSLVDALLHYVDRANDLINNNP
RILLNILNLIKALWQGAAQYTQILSVLRSSENFWKQLSNAISLIAGIKDPPLENLTETGG
LNLAYKYRCQSTILEIISYEMFLQKKLSHAESLVKHTAESKDRIENAVNIEKSKATKDIV
SSWCESSVLGNLIKSYSSCEYDNEKYFRAKVAASLFTVHVMGRLATNDSGTLSISLLQKI
LVISKKLSCQPAFSELLAQYSQRGYSEGKELKTLILSDLYYQLQGEFEGRKIAPGAFKEL
HQYLGESKFLQTYHHKYDDDLFATSKDVYLFDLEHLRADMGLDIWDCSEWKASKTIAETM
LHCMQDANSMILLSSSKHSALKALISVLTVSEGDSTERKTIGGKIPDRLVLSCIDHICQC
FYATVESLAPILDVSEDILCFLAAQAELLLHLMRSAHKSLSLHACTLVLKTSGSGLKVLS
DLRQSITEVNTTMELLLMLVLSTLEFTCLNSPLGGVTDMESVEDLAKISNATIVLLPIFC
NYITTAEHCTLSLTIMDFILRSFLTPDTWFPIIQTHLELQHVILKLHDKNSFASIPILLK
FFLTLARVKGGAVMLLNSGFLTSLRVLFSEYLDGGSSSINGEGSISNSSDKIEKPQHIWG
LGLAVVTAMIQSLGDSSICTDIVDNVIPYFFSEKAYMISYYLNAPDFPSDDPDKKRPRAQ
RTQTSLAALEETEHTLMLMCVLAKHWNSWVKAMKEMDSQLREKSIHLLAFISRGTQHHGE
SAIRGAPLLCPPTLKEDFDLCKKAPFIKSKNGWFALSPLGCVSKQKFTAVSTALITKDQA
NTVPTYFSDAIALQIYRITFLILKFLSLQAEGATKRAEEVGFVDLAHFPELPMPEILHGL
QDQAIAIVTELCEANKSDRVHSEIKGVCCLLLQIMEMALYLELCVLQICGIRPVLGRVED
FSKDLKLLIRATEGHAFLKASMKSLKHIVSFVYPRLLQSEGFM
NT seq
5892 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaccactaagtccgtcgacgcctctctctggtgggacccattctctctcctc
ctcaccgacctcgagaacgcctctctctcctccgacctccctccaaatctcgcgaagaag
ttgaaggaaaaccgaggttggttcgtggacacagtgtcgcgcttcaagtcaccgaatcag
aaatcgaaggaggctttgaattcagagacagtgaagattggggatcgccaattgactatc
cagcctgaattgaaagaaaaggcattgcgtatcagctcctacttggctttagatgaagtt
caaacgtacattcttgtcgaaaggactctaaaggacaaaaatttaggtgccgattctata
gttcaagaatatcttcatgtgatattgcttcagtattacatggaacggcagtgcttactg
aaatgtaccaggaggattcttatgcatgctttatatgttggaactggctccaaagaaggt
caaattattagggaagaagtgctaaagctgatttctgatggactagaaaggaaatcaata
tccttactggaagaccttctatcatctagtcaccctgagcagatggatgtcgaccttttt
accttgtgggccgaggagacactgatagaagacaatttggttttagacattcttttccta
gcgtattatgagtcattttgtacctgtgatggtggaagttggaaaaagttgtgctccctc
tacaagggaatcttatctgggacttgtaactttggaaagctggctatatcaactgaagca
gtacattattctcatcatgccaaaattcagctcctccttatccttatagaaaccctggac
ctggaaattcttctccagatggttcatgatgaaatgcctttcaggaacggtttctctgtt
ttcaccttgactgatgtccaagagattgatgcactaatttctagtttcaatgtatttgag
ttaaaagactcaggccctctgattctagcatgggcagtgtttctttgcttaatttcatca
cttccaggaaaggaggaaaacaatgtactaatggagattgatcatgttggttatgtacgc
caagcgtttgaggttgaatccttgaattattttcttgaaatccttcaaagtgatatattg
aaggaatcagatggacctgttgctggctatcgaagtgtcttaagaacttttatttctgca
tttattgcatcttatgagatcaatcttcagatgggggacagtacccttaatttgatattg
gatattctttacaaaatttatcgaggcgaggagtcactttgtattcagttctgggacaag
gaaagttttattgatggtcctattcggtgtcttctttgcaacttagagggtgaatttccc
tttaggactgtggaacttgttcgccttttgtcatccctctgtgaaggaacttggcctgca
gaatgcgtttataacttcctagacaagtcagttggaatatcatctctgtttgagattaga
agtgattccctggtggataacgtctctcaaattgttgaaacacacctgccagtgcatgtt
cctggagttgaaggtttactcattcctagtaaaactcgtggacatgttttgaaaatgatt
ggtgggaatactgctcttgtccgatgggagtatacacaatctggtgtgcttgtattgctc
ctccgattggggcaggatctgtatccagacaaaagtgaggaaatttttcttactcttgac
ctgctttgccgaatggtgtcttttaacacggatgtgtgtttttctttaatggagaccggc
agcttattgcatgtgccagaaactggcatgactgcaacattggaaaagaatgtgtgggcg
gttgagatcatctgcactttggtcagaaatctgtctcctaattccaatagtgctgctctg
atgtccatgggtgtgaagatcttaggaaagttgttgaaatgttctccatctcatgtttct
gcggcggctctaaaggcaaatatatttgatctggttttagagacaagtatccgtgatatt
ggaagtaatagttcatcaagtggatcatggttactttctggaaaattggcaaagatgctt
ttaattgactgtgagcagaatgataacgaccacccattggccatatcagtgctggacttt
accatgcagcttgtggaaacaggattagaggatgattctctcttggctctaattgttttc
tctctgcagtatgtcctagttagtcatgagtactggaaatacaaagtaaagtatgtccgt
tggaaaataacactgaaggtgctagaagtgatgaaaaaatgcatattattagtcgcatac
tatgaaagattgggtgatattatccaggacatgttactttgtgattcttctatccacggc
acactctttcgaattatttgtacaactaaacaatccttagagaatctttatgttagccgt
ctgtttgaattgatggagattgaaggattacagcttgctataggttctgtattagatatt
ctgttcatcatgctctccaaattttcaaaggatgtatcttccagcctttctgtctttcat
caagcagtgctgtcatgtacaaccaaaccagttcccgttgttgatgctgttacatcctta
atatcatattttcgcagccctgcaatccaagttggtgctgctagggtactgtcagtattg
ttgatcatggcagattatttacaacaatatttggttggaagtgcatgccttcgtttggat
gataagcagattacagatttgaggcattctataagctacatactacttaagcagtcagtg
tgtaatgaagatctcttcgttgccacagtaaatgtgcttacttctgcagcacattatcag
cctgcttttcttgttgatgtatttggtgctaaagagagtacaggtgtccaggatagtaat
gttgatagtttgaagcaaacagcaaaagaagctgggtcacagggttgcaagaattcaagt
cttgtagatgcactcctgcactatgttgatagggctaatgatctgatcaacaacaatccc
cggatactgttaaatatacttaacttaatcaaggccttgtggcaaggagctgctcagtat
acacaaattttgtcggtgctgaggagctctgaaaatttctggaagcaattgtccaacgct
atttcactaattgctggcattaaagatcctccacttgaaaatctgactgagacggggggg
ctaaacttggcatacaaatatcgatgccaatctacaatattagaaataatttcgtacgag
atgttcctgcagaaaaagttgtcacatgctgaatcacttgtaaagcatacggctgaatca
aaggacaggatagaaaatgcagtaaacattgaaaaatcaaaagctacaaaagatattgtg
tcaagctggtgtgagagctctgttttgggcaatctgatcaagtcatattcttcgtgtgaa
tatgacaacgaaaaatacttccgtgcaaaggttgctgcaagtttgttcactgtgcatgtg
atgggtagactagcaaccaatgactcaggaactttgtctatatcattacttcagaagatc
cttgtcatttcaaaaaagttgagctgtcagcctgctttttctgaattgttggctcaatat
tctcagcgtggttacagtgaagggaaggagctaaagaccttaattcttagtgatctttat
tatcaattacaaggagagtttgaaggccgtaaaattgctcctggagcattcaaagaactg
catcagtatcttggtgaatcaaagtttttgcagacttatcatcataagtatgatgatgac
ctttttgcaacttccaaagatgtctacttgtttgaccttgaacacctcagagcagatatg
ggattagatatatgggattgttcagaatggaaagcatcaaaaacaattgcagaaacaatg
ctgcattgcatgcaggatgcaaactcgatgatattgctttcaagttcaaagcattctgca
ttgaaagcattaataagtgttttaactgtctctgagggtgattcaacagagagaaaaact
attggaggaaagatccctgatcgactcgttttatcatgtatagatcatatatgccaatgt
ttctatgccacagtagaatcattagctccaattctggatgtctctgaagatatcctttgt
tttctagcagcccaggcggaattacttctccatcttatgagatctgcacataaaagcttg
tccttgcatgcttgtacacttgtcttaaaaacctcaggttctggtcttaaagtgttgagt
gacttgaggcaatcaattacggaggttaacacaacaatggagctattgcttatgttggtt
ctttcaactttggagtttacttgccttaattcacctttaggtggggtgacggacatggaa
tctgtggaagacttggctaagatttcaaatgcaactattgtgctactgcccattttctgc
aactacattactactgctgagcattgcaccctctccctgacaataatggatttcatacta
agaagtttcttgacacctgacacttggtttccaatcatacagactcatctcgagttgcag
catgtaattctgaagcttcatgataaaaattcttttgcatctattcccatactattgaag
ttctttctgaccctcgcacgtgttaaaggaggtgctgtgatgcttcttaattcgggtttt
cttacttctctgagggttttgttttctgaatacttggatgggggatcttcctcaattaat
ggtgaggggagtatctccaactcatctgacaaaattgaaaagcctcaacacatttgggga
cttggcttggccgtggttacggctatgattcaatctttaggagacagttctatttgcact
gatattgtggacaatgtgataccgtatttcttttcagagaaagcttacatgatttcttat
tatctcaatgcgccagactttccgtctgatgatcctgacaagaaaagacctagggctcaa
aggacacaaacttctttggctgctcttgaagaaacagagcataccctgatgctaatgtgt
gtgctagcaaagcattggaattcatgggttaaggccatgaaagaaatggattcacagtta
agagagaaaagtatccatctcttggcctttataagccggggaactcaacaccatggagaa
tcggccatcaggggcgcccctcttttgtgtccccctaccctcaaagaggactttgatttg
tgcaagaaagcaccatttatcaaaagcaaaaatggatggtttgccctttcacctcttggt
tgtgtgtcaaagcagaaattcactgctgtctcaactgcgctgataaccaaggatcaagca
aatactgttccaacttacttctctgatgctattgccttgcagatctacagaatcacattt
cttattctgaaattcctctctttacaagctgagggtgctacgaaaagggcagaggaggtg
gggtttgttgatcttgctcattttcctgagcttccaatgccagaaattttacatggttta
caggatcaagccattgctattgttactgagctgtgtgaggccaacaaatcggatcgggtt
cattcagaaatcaagggtgtctgttgcctgttgctgcaaataatggaaatggctttgtat
ttggaactttgtgttctacagatttgtggcataagacctgtattagggcgagttgaggat
ttttcaaaggatctgaaattgttgataagagcaacagaaggccatgcttttttgaaagca
tcaatgaagtccttgaagcatatagtatcatttgtctatccacgtttgttacagtcggag
ggtttcatgtaa
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