Chlorocebus sabaeus (green monkey): 103217099
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Entry
103217099 CDS
T04361
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
csab
Chlorocebus sabaeus (green monkey)
Pathway
csab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103217099 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csab03041
]
103217099 (PRPF40A)
Spliceosome [BR:
csab03041
]
Complex A
U1 snRNP components
U1 related factors
103217099 (PRPF40A)
Complex B
103217099 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
103217099
NCBI-ProteinID:
XP_007963168
Ensembl:
ENSCSAG00000016002
LinkDB
All DBs
Position
10:complement(38086971..38151726)
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AA seq
1040 aa
AA seq
DB search
MQATPSEAEAAGESPQSCVSAAHSDWTAGKPVSLLASLIPPRSAGQPLTFSPSGRQPLRS
LLVGMCSGSGRRRSSLSPTMRPGTGAERGGLMVSEMESHPPSQGPGDGERRLSGSSLCSG
SWVSADGFLRRRPSMGHPGMHYAPMGMHPMGQRANMPPVPHGMMPQMMPPMGGPPMGQMP
GMMSSVMPGMMMSHMSQASMQPALPPGVNSMDVAAGTASGAKSMWTEHKSPDGRTYYYNT
ETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKPYYYNSQTKESRWAKPKELEDLEGY
QNTIVAGSLITKSNLHAMIKAEESSKQEECTTTSTAPVPTTEIPTTMSTMAAAEAAAAVV
AAAAAAAAAAAAANANASTSTSNTVSGTVPVVPEPEVTSIVATVVDNENTVTISTEEQAQ
LTSTPAIQDQSVEVSSNTGEETSKQETVADFTPKKEEEESQPAKKTYTWNTKEEAKQAFK
ELLKEKRVPSNASWEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYK
EAKESFQRFLENHEKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKE
QAKQLRKRNWEALKNILDNMANVTYSTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICF
EEHIRALEKEEEEEKQKSLLRERRRQRKNRESFQIFLDELHEHGQLHSMSSWMELYPTIS
SDIRFTNMLGQPVFSLGSTALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTTFE
DFVAIISSTKRSTTLDAGNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQA
APPIELDAVWEDIRERFVKEPAFEDITLESERKRIFKDFMHVLEHECQHHHSKNKKHSKK
SKKHHRKRSRSRSGSDSDDDDSHSKKKRQRSESRSASEHSSSAESERSYKKSKKHKKKSK
KRRHKSDSPESDAEREKDKKEKDRESEKDRTRQRSESKHKSPKKKTGKDSGNWDTSGSEL
SEGELEKRRRTLLEQLDDDQ
NT seq
3123 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcgacgccgagtgaggctgaggctgcgggcgaatcgccgcagagttgcgtgtcg
gccgcgcattctgattggacagcggggaagcccgtcagcctgttggcctcgctgatcccg
ccccgtagcgcagggcagcctttaacctttagccccagtgggcgccagccactcagatcg
cttcttgttggtatgtgtagcggcagtggccgccggcggagcagtctgagcccgacgatg
aggccggggacgggagctgaacgtggaggcctcatggtgagtgaaatggagagccatcct
ccctcgcagggtcctggggacggggagcggagattgtccggctcaagcctctgctccggc
tcttgggtctctgctgacggcttcctgaggagacggccctcgatggggcaccctggcatg
cattatgccccaatgggaatgcaccctatgggtcagagagcgaatatgcctcctgtacct
catggaatgatgccacagatgatgccccctatgggagggccaccaatgggacaaatgcct
ggaatgatgtcgtcagtaatgcctggaatgatgatgtctcatatgtctcaggcttccatg
cagcctgccttaccgccaggagtaaatagtatggatgtagcagcaggtacagcatctggt
gcaaaatcaatgtggactgaacataaatcacctgatggaaggacttattactacaacact
gaaaccaaacaatctacctgggagaaaccagatgatctcaaaacacctgctgagcaactc
ttatctaaatgcccctggaaggaatacaaatcagattctggaaagccttactattacaat
tctcaaacaaaagaatctcgctgggccaaacctaaagaacttgaggatcttgaaggatac
cagaataccattgttgctggaagtcttattacaaaatcaaacctgcatgcaatgatcaaa
gctgaagaaagcagtaagcaagaagaatgcaccacaacatcaacagccccagtccctaca
acagaaattccgaccacaatgagcaccatggctgctgcagaagcagcagctgctgttgtt
gcagctgcagcagcagcagcagctgcagcagctgcagccaatgctaatgcttccacttct
acttctaatactgtcagtggaactgttccagttgttcctgagcctgaagttacttccatt
gttgctactgttgtagataatgagaatacagtaactatttcaactgaggaacaagcacaa
cttactagtacccctgctattcaggatcaaagtgtggaagtatccagtaatactggagaa
gaaacatctaagcaagaaactgtagctgattttactcccaaaaaggaagaggaggagagc
caaccagcaaagaaaacatacacttggaatacaaaggaggaggcaaagcaagcttttaaa
gaattattgaaagaaaagcgggtaccatcaaatgcttcatgggagcaagctatgaaaatg
attattaatgatccacgatacagtgctttggcaaagttaagtgaaaaaaagcaagccttt
aatgcctataaagtccagacagaaaaagaagaaaaagaagaagcaagatcaaagtacaaa
gaggctaaggaatcctttcagcgttttcttgaaaatcatgagaaaatgacttctacaacc
agatacaaaaaagcagagcaaatgtttggagagatggaagtttggaatgcaatatcagaa
cgtgatcgtcttgaaatctacgaagatgttctgttctttctttcaaaaaaagaaaaggaa
caagcaaagcagttgcgaaagagaaattgggaagccttaaaaaacatacttgacaacatg
gctaatgtaacatactctaccacttggtctgaagcccagcagtatctgatggataatcca
acttttgcagaagatgaggagttacaaaatatggacaaagaagatgcattaatttgcttt
gaagaacacattcgggctttagaaaaggaggaagaagaagaaaaacagaagagtttgcta
agagaaaggagacgacagcgaaaaaatagggaatctttccagatatttttagatgaatta
catgaacatggacaactacattctatgtcatcttggatggaattgtatccaactattagt
tctgatattagattcactaatatgcttggtcagcctgttttttcattaggatcaactgca
cttgatcttttcaagttttatgttgaggatcttaaagcacgttatcatgatgagaagaag
ataataaaagacattctaaaggataaagggtttgtagttgaagtaaataccacttttgaa
gattttgtggcgataatcagttcaactaaaagatcaactacattagacgctggaaatatc
aaattggctttcaatagtttactagaaaaggcagaagcccgtgaacgcgaaagagaaaaa
gaagaggctcggaagatgaaacgaaaagagtctgcatttaagagtatgttaaaacaagct
gctcccccgatagaattggatgctgtctgggaagatatccgtgagagatttgtaaaagag
ccagcatttgaggacataactctagaatctgaaagaaaacgaatatttaaagattttatg
catgtgcttgagcatgaatgtcagcatcatcattcaaagaacaagaaacattctaagaaa
tctaaaaaacatcataggaaacgttcccgctctcgatcggggtcagattcagatgatgat
gatagccattcaaagaaaaaaagacaacgatcagagtctcgttctgcttcagaacattct
tctagtgcagagtctgagagaagttacaaaaagtcgaaaaagcataagaagaaaagtaag
aagaggagacataaatctgactctccagaatccgatgctgagcgagagaaggataaaaaa
gaaaaagatcgggaaagtgaaaaagacagaactagacaaagatcagaatcaaaacacaaa
tcgcctaagaaaaagactggaaaggattctggtaattgggatacttctggcagtgaactg
agtgaaggggaattggaaaagcgcagaagaacccttttggagcaactggatgatgatcaa
taa
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