Chlorocebus sabaeus (green monkey): 103217190
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Entry
103217190 CDS
T04361
Symbol
IFIH1
Name
(RefSeq) interferon induced with helicase C domain 1
KO
K12647
interferon-induced helicase C domain-containing protein 1 [EC:
5.6.2.6
]
Organism
csab
Chlorocebus sabaeus (green monkey)
Pathway
csab04622
RIG-I-like receptor signaling pathway
csab05161
Hepatitis B
csab05162
Measles
csab05164
Influenza A
csab05168
Herpes simplex virus 1 infection
csab05171
Coronavirus disease - COVID-19
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
103217190 (IFIH1)
09160 Human Diseases
09172 Infectious disease: viral
05161 Hepatitis B
103217190 (IFIH1)
05171 Coronavirus disease - COVID-19
103217190 (IFIH1)
05164 Influenza A
103217190 (IFIH1)
05162 Measles
103217190 (IFIH1)
05168 Herpes simplex virus 1 infection
103217190 (IFIH1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
csab04054
]
103217190 (IFIH1)
Enzymes [BR:
csab01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103217190 (IFIH1)
Pattern recognition receptors [BR:
csab04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
103217190 (IFIH1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CARD_2
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
CARD
SNF2-rel_dom
SWI2_SNF2
DUF3638
Cas3-like_C_2
FeoB_Cyto
Sigma70_ner
Motif
Other DBs
NCBI-GeneID:
103217190
NCBI-ProteinID:
XP_007963350
Ensembl:
ENSCSAG00000015614
UniProt:
A0A0D9RSR4
LinkDB
All DBs
Position
10:complement(47676799..47732310)
Genome browser
AA seq
1025 aa
AA seq
DB search
MSNGYSTDENFRYLISCFRARVKMYIQVEPVLDYLTFLPAEVKEQIQRTVATSGNMQAVE
LLLSTLEKGVWHLGWTREFVEALRRAGSPLAARYMNPELTDLPSPSFENAHDECLQLLNL
LQPTLVDKLLVRDVLDKCTEEELLTIEDRNRIAAAENNGNESGVRELLKRIVQKENWFSA
FLDVLRQTGNDELVQELTGTDCSESNAEIENLSQDDGPQVEEQLLSTTVQPNLEKEVWGM
ENNSSESSFADSSVVSESDTSLAEGSVSCLDESLGHNSNMGSDSGTMGSDSDEENVAARA
SPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVI
VLVNKVLLVEQLFRKEFKPFLKKWYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENS
LLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLMQKLKNNRLKKENKLVIP
LPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCKKFA
IADDTREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKDRVC
AEHLRKYNEALQINDTIRMIDAYNHLETFYNEEKDKKFAVIEDDSDEGGDDEYCDGDEDE
DDLKKPLKLDETDRFLMTLFFENNKMLKKLAENPEYENEKLTKLRNTIMEQYTRTEESAR
GIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRT
GKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGV
IERETVNDFREKMMYKAIHCVQNMKPEEYAHKILELQMQSIMEKKMKTKRSIAKHYKNNP
SLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEFKELYIVRENKALQKKCADYQTNGEI
ICKCGQAWGTMMVHKGLDLPCLKIRNFVVVFKNSSTKKQYKKWVELPITFPNLDYSECCL
FSDED
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaatgggtattccacagacgagaatttccgctatctcatctcgtgcttcagggcc
agggtgaaaatgtacatccaggtggagcctgtgttggactacctgacctttctgcctgca
gaggtgaaggagcagattcagaggacggtcgccacctccgggaacatgcaggcggttgaa
ctgctcctgagcaccttggagaagggagtctggcaccttggttggactcgggaattcgtg
gaggccctccgaagagcgggcagccctctggccgcccgctacatgaaccctgagcttact
gacttgccctctccatcgtttgagaacgctcatgatgaatgtctccaactgctgaacctc
cttcagcccactctggtggacaagcttctagttagagacgtcttggataagtgcacggag
gaggaactgttgacaattgaagacagaaaccggattgctgctgcagaaaacaacggaaat
gaatcaggtgtaagagaactactaaaaaggattgtgcagaaagaaaactggttctctgca
tttctggatgttcttcgtcaaacaggaaacgatgaacttgtccaagagttaacaggcact
gattgctcagaaagcaatgcagagattgagaatttatcacaagatgatggtcctcaagtg
gaagagcaacttctttcaaccacagttcagccaaatctggagaaggaggtctggggcatg
gagaataactcatcagaatcatcttttgcagattcttctgtagtttcagaatcagacaca
agtttggcagaaggaagtgtcagctgcttagatgaaagtcttggacataacagcaacatg
ggcagtgattcaggcaccatgggaagtgattcagatgaagagaatgtggcagcaagagca
tccccagagccagaactccagctcaggccttaccaaatggaagttgcccaaccagccttg
gaagggaagaatatcatcatctgccttcctacagggagtggaaaaaccagagtggccgtt
tacattgccaaggatcacttagacaagaagaaaaaagcatctgagcctggaaaagttata
gttcttgtcaataaggtactgttagttgaacagctcttccgcaaggagttcaaaccattt
ttgaagaaatggtatcgtgttattggattaagtggtgatacccaactgaaaatatcattt
ccagaagttgtcaagtcgtgtgatattattatcagtacagctcaaatccttgaaaattcc
ctcttaaacttggaaaatggagaagatgctggtgttcaattgtcagacttttccctcatt
atcattgatgaatgtcatcataccaacaaagaagcggtgtataataacatcatgaggcgt
tatttgatgcagaagttgaaaaacaatagactcaagaaagaaaacaaactagtgattcct
cttcctcagatactgggactaacagcttcacctggtgttggaggggccacaaagcaagct
aaagccgaagaacacattttaaaactatgtgccaatcttgatgcatttactattaaaact
gttaaagaaaaccttgatcaactgaaaaaccaaatacaggagccatgcaagaagtttgca
attgcagatgacaccagagaagatccatttaaagagaaacttctagaaataatgacaagg
attcaaacttattgtcaaatgagtccaatgtcagattttggaactcaaccctatgaacaa
tgggccattcaaatggaaaaaaaagctgcaaaagaaggaaatcgcaaagaccgtgtttgt
gcagaacatttgaggaagtacaatgaggccctacaaattaatgacacaattcgaatgata
gatgcatataatcatcttgaaactttctataatgaagagaaagataagaagtttgcagtc
atagaagatgatagtgatgagggtggtgatgatgagtattgtgacggtgatgaagatgag
gatgatttaaagaaacctttgaaactggatgaaacagatagatttctcatgactttattt
tttgaaaacaataaaatgttgaaaaaactggctgaaaacccagaatatgaaaatgaaaag
ctgaccaaattaagaaataccataatggagcaatatactaggactgaggaatcagcacga
ggaataatctttacaaaaacacgacagagtgcatatgcactttcccagtggattactgaa
aatgaaaaatttgctgaagtaggagtcaaagcccaccatctgataggagctggacacagc
agtgagttcaaacccatgacacagaatgaacaaaaagaagtcattagtaaatttcgcact
ggaaaaataaatctgcttatcgctaccacagtggcagaagaaggtctggatattaaagaa
tgtaacattgttatccgttatggtcttgtcaccaatgaaatagccatggtccaggcccgt
ggtcgagccagagctgatgagagcacctatgtcctggttgctcacagcggttcaggagtt
atcgaacgtgagacagttaatgatttccgagagaagatgatgtataaagctatacactgt
gttcaaaatatgaaaccagaggagtatgctcataagattttggaattacagatgcaaagt
ataatggaaaagaaaatgaaaaccaagagaagtattgccaagcattacaagaataaccca
tcactaataactttcctttgcaaaaactgcagcgtgctagcctgttctggggaagatatc
cacgtaattgagaaaatgcatcatgtcaatatgaccccagaattcaaggaactttacatt
gtaagagaaaacaaagccctgcaaaagaagtgtgctgactatcaaacaaacggtgaaatc
atctgcaaatgtggccaggcttggggaacaatgatggtgcacaaaggcttagatttgcct
tgtctcaaaataaggaattttgtagtggttttcaaaaatagttcaacaaagaaacaatac
aaaaagtgggttgaattacctatcacatttcccaatcttgactattcggaatgctgttta
tttagtgatgaggattaa
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