Chlorocebus sabaeus (green monkey): 103217230
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Entry
103217230 CDS
T04361
Symbol
SCN1A
Name
(RefSeq) sodium voltage-gated channel alpha subunit 1
KO
K04833
voltage-gated sodium channel type I alpha
Organism
csab
Chlorocebus sabaeus (green monkey)
Pathway
csab04728
Dopaminergic synapse
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09150 Organismal Systems
09156 Nervous system
04728 Dopaminergic synapse
103217230 (SCN1A)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csab04040
]
103217230 (SCN1A)
Ion channels [BR:
csab04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
103217230 (SCN1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_cytopl
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
GPHH
ATP-synt_B
IQ
FUT8_N_cat
PFF1_TM
New_glue
FraC
Motif
Other DBs
NCBI-GeneID:
103217230
NCBI-ProteinID:
XP_007963416
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All DBs
Position
10:complement(51490204..51653916)
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AA seq
2011 aa
AA seq
DB search
MEQTVLVPPGPDSFNFFTRESLAAIERRIAEEKAKNPKPDKKDDDENGPKPNSDLEAGKN
LPFIYGDIPPEMVSEPLEDLDPYYINKKTFIVLNKGKAIFRFSATSALYILTPFNPLRKI
AIKILVHSLFSMLIMCTILTNCVFMTMSNPPDWTKNVEYTFTGIYTFESLIKIIARGFCL
EDFTFLRDPWNWLDFTVITFAYVTEFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGAL
IQSVKKLSDVMILTVFCLSVFALIGLQLFMGNLRNKCIQWPPTNASLEEHSVEKNITVNY
NGTLINETVFEFDWKSYIQDSRYHYFLEGFLDALLCGNSSDAGQCPEGYVCVKAGRNPNY
GYTSFDTFSWAFLSLFRLMTQDFWENLYQLTLRAAGKTYMIFFVLVIFLGSFYLINLILA
VVAMAYEEQNQATLEEAEQKEAEFQQMIEQLKKQQEAAQQAATATASEHSREPSAAGRLS
DSSSEASKLSSKSAKERRNRRKKRKQKEQSGGEEKDEDEFHKSESEDSIRRKGFRFSIEG
NRLTYEKRYSSPHQSLLSIRGSLFSPRRNSRTSLFSFRGRAKDVGSENDFADDEHSTFED
NESRRDSLFVPRRHGERRNSNLSQTSRSSRMLAVFPANGKMHSTVDCNGVVSLVGGPSVP
TSPVGQLLPEVIIDKPATDDNGTTTETEMRKRRSSSFHVSMDFLEDPSQRQRAMSIASIL
TNTVEELEESRQKCPPCWYKFSNIFLIWDCSPYWLKVKHVVNLVVMDPFVDLAITICIVL
NTLFMAMEHYPMTDHFNNVLTVGNLVFTGIFTAEMFLKIIAMDPYYYFQEGWNIFDGFIV
TLSLVELGLANVEGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYKDCVCKIASDCQLPRWHMNDFFHSFLIVFRVLCGEWIETMWDCM
EVAGQAMCLTVFMMVMVIGNLVVLNLFLALLLSSFSADNLAATDDDNEMNNLQIAVDRMH
KGVAYVKRKIYEFIQQSFIRKQKILDEIKPLDDLNNKKDSCMSNHTTEIGKDLDYLKDVN
GTTSGIGTGSSVEKYIIDESDYMSFINNPSLTVTVPIAVGESDFENLNTEDFSSESDLEE
SKEKLNESSSSSEGSTVDIGAPAEEQPVVEPEETLEPEACFTEGCVQRFKCCQINVEEGR
GKQWWNLRRTCFRIVEHNWFETFIVFMILLSSGALAFEDIYIDQRKTIKTMLEYADKVFT
YIFILEMLLKWVAYGYQTYFTNAWCWLDFLIVDVSLVSLTANALGYSELGAIKSLRTLRA
LRPLRALSRFEGMRVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYHCINTT
TGDRFDIEDVNNHTDCLKLIERNETARWKNVKVNFDNVGFGYLSLLQVATFKGWMDIMYA
AVDSRNVELQPKYEESLYMYLYFVIFIIFGSFFTLNLFIGVIIDNFNQQKKKFGGQDIFM
TEEQKKYYNAMKKLGSKKPQKPIPRPGNKFQGMVFDFVTRQVFDISIMILICLNMVTMMV
ETDDQSEYVTTILSRINLVFIVLFTGECVLKLISLRHYYFTIGWNIFDFVVVILSIVGMF
LAELIEKYFVSPTLFRVIRLARIGRILRLIKGAKGIRTLLFALMMSLPALFNIGLLLFLV
MFIYAIFGMSXXXNFAYVKREVGIDDMFNFETFGNSMICLFQITTSAGWDGLLAPILNSK
PPDCDPNKVNPGSSVKGDCGNPSVGIFFFVSYIIISFLVVVNMYIAVILENFSVATEESA
EPLSEDDFEMFYEVWEKFDPDATQFMEFEKLSQFAAALEPPLNLPQPNKLQLIAMDLPMV
SGDRIHCLDILFAFTKRVLGESGEMDALRIQMEERFMASNPSKVSYQPITTTLKRKQEEV
SAVIIQRAYRRHLLKRTVKQASFTYNKNKIKGGANLIKEDMIIDRINENSITEKTDLTMS
TAACPPSYDRVTKPIVEKHEQEGKDEKAKGK
NT seq
6036 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaacagtgcttgtaccaccaggacctgacagcttcaacttcttcaccagagaa
tctcttgcggctattgaaagacgcattgcagaagaaaaggctaagaatcccaaaccagac
aaaaaagatgacgacgaaaatggcccaaagccaaatagtgacttggaagctggaaagaac
cttccatttatttatggagacattcctccagagatggtgtcagagcccctggaggacctg
gacccctactatatcaataagaaaacttttatagtattgaataaagggaaggccatcttc
cggttcagtgccacctctgccctgtacattttaactcccttcaatcctcttaggaaaata
gctattaagattttggtacattcattattcagcatgctaattatgtgcactattttgaca
aactgtgtgtttatgacaatgagtaaccctcctgactggacaaagaatgtagaatacacc
ttcacaggaatatacacttttgaatcacttataaaaattattgcaaggggattctgttta
gaagattttactttccttcgggatccatggaactggctcgatttcactgtcattacattt
gcgtacgtcacagagtttgtggacctgggcaatgtctcggcattgagaacattcagagtt
ctccgagcattgaagacaatttcagtcattccaggcctgaaaaccattgtgggagccctg
atccagtctgtaaagaaactctctgatgtcatgatcctcactgtgttctgtctgagcgtg
tttgctctaattgggctgcagctgttcatgggcaacctgaggaataaatgtatacaatgg
cctcccaccaatgcttccctggaggaacatagtgtagaaaagaatataactgtgaattat
aatggtacacttataaatgaaactgtctttgagtttgactggaagtcatatattcaagat
tcaagatatcattatttcctggagggttttttagatgcactactatgtggaaatagctct
gatgcaggccagtgtccagagggatatgtgtgtgtgaaagctggtagaaatcccaattat
ggctacacaagctttgataccttcagctgggcttttttgtccttgtttcgactaatgact
caggacttctgggaaaatctttatcaactgacattacgtgctgctgggaaaacatacatg
atattttttgtgttggtcattttcttgggctcattctacctaataaatttgatcctggct
gtggtggccatggcctacgaggaacagaatcaggccaccttggaagaagcagaacagaaa
gaggccgaatttcagcagatgatcgaacagcttaaaaagcaacaggaggcagctcagcag
gcagcgacggcaactgcctcagaacattccagagagcccagtgcagcaggcaggctctca
gacagctcatctgaagcctctaagttgagttccaagagtgctaaggaaagaagaaatcgg
aggaagaaaagaaaacagaaagagcagtctggtggggaagagaaagacgaggatgaattc
cataaatctgaatctgaggacagcatcaggaggaaaggttttcgcttctccattgaaggg
aaccggttgacatatgaaaagaggtactcttccccgcaccagtctttgttgagcatccgt
ggctccctattttcaccgaggcgaaatagcagaacaagccttttcagctttagagggcga
gcaaaggatgtgggatctgagaatgactttgcagatgatgagcacagcacctttgaggat
aacgagagccgtagagattccttgtttgtgccccgacgacatggagagcgacgcaacagc
aacctgagtcagaccagtaggtcatcccggatgctggcagtgtttccagcgaatgggaag
atgcacagcactgtggattgcaatggtgtggtttccttggttggtggaccttcagttcct
acatcgcctgttggacagcttctgccagaggtgataatagataagccagctactgatgac
aatggaacaaccactgaaactgaaatgagaaagagaaggtcaagttctttccatgtttcc
atggactttctagaagatccttcccaaaggcaacgagcaatgagtatagccagcattcta
acaaatacagtggaagaacttgaagaatccaggcagaaatgcccaccctgttggtataaa
ttttccaacatattcttaatctgggactgttctccatattggttaaaagtgaaacatgtt
gtcaacctggtcgtgatggacccatttgttgacctggccatcaccatttgtattgtctta
aatacccttttcatggccatggagcactatccaatgacggaccatttcaataatgtgctt
acagtaggaaatttggttttcactgggatctttacagcagaaatgtttctgaaaattatt
gccatggatccttactattatttccaagaaggctggaatatctttgatggttttattgtg
acgcttagcctggtagaacttggactcgccaatgtggaaggattatctgttctccgttca
tttcgattgctgcgagttttcaagttggcaaaatcttggccaacgttaaatatgctaata
aagattattggcaattccgtgggggctctgggaaatttaacccttgtgttggccatcatc
gtcttcatttttgccgtggttggcatgcagctctttggtaaaagctacaaagattgtgtc
tgcaagatcgccagtgattgtcaactcccacgctggcacatgaatgacttcttccactcc
ttcctgattgtgttccgcgtgctgtgtggggagtggatagagaccatgtgggactgtatg
gaggttgctggtcaagccatgtgccttactgtcttcatgatggtcatggtgattggaaac
ctagtggtcctgaatctctttctggccttgcttctgagctcatttagtgcggacaacctt
gcagccactgatgatgataatgaaatgaacaatctccaaattgctgtggataggatgcac
aaaggagtagcttatgtgaaaagaaaaatatatgaatttattcaacagtccttcattagg
aaacaaaagattttagatgaaattaaaccacttgatgatctaaacaacaagaaagacagt
tgtatgtccaatcatacaacagaaattgggaaagatcttgactatcttaaagatgtaaat
ggaactacaagcggtataggaactggcagcagtgttgaaaaatacattattgatgaaagt
gattacatgtcattcataaacaatcccagtcttactgtgactgtaccaattgctgtagga
gaatctgactttgaaaatttaaacacggaagactttagtagtgaatcggatctggaagaa
agcaaagagaaactgaatgaaagcagtagctcatcagaaggtagcactgtggacatcggc
gcacctgcagaagaacagcccgtagtggaacctgaagaaacccttgaaccggaagcctgt
ttcactgaaggctgtgtacaaagattcaagtgttgtcaaatcaatgtggaagaaggcaga
ggaaaacagtggtggaacctgagaaggacgtgtttccgaatagttgaacataactggttt
gagaccttcattgttttcatgattctccttagtagcggtgctctggcatttgaagatata
tatattgatcagcgaaagacgattaagacaatgttggaatatgctgacaaggttttcact
tacattttcattctggaaatgcttctaaaatgggtggcatacggctatcaaacatatttc
accaatgcctggtgttggctggacttcttaattgttgatgtttcactggtcagtttaaca
gcaaatgccttgggttactcagaacttggagccatcaaatctctcaggacactcagagct
ctgagacctctaagagccttatctcgatttgaagggatgagggtggttgtgaatgccctt
ttaggagcaattccatccatcatgaatgtgcttctggtttgtcttatattctggctaatt
ttcagcatcatgggcgtaaatttgtttgctggcaaattctaccactgtattaacaccaca
actggtgacaggtttgacatcgaagacgtgaataatcatactgattgcctaaaactaata
gaaagaaatgagactgctcgatggaaaaatgtgaaagtaaactttgataatgtaggattt
gggtatctctctttgcttcaagttgccacatttaaaggatggatggatataatgtatgca
gcagttgattccagaaatgtggaacttcagcctaagtatgaagaaagtctgtacatgtat
ctttactttgttattttcatcatctttgggtccttcttcaccttgaacctgttcattggt
gtcatcatagataatttcaaccagcagaaaaagaagtttggaggtcaagacatctttatg
acagaagaacagaagaaatactataatgcaatgaaaaaattaggatcaaaaaaaccgcaa
aagcctattcctcgaccaggaaacaaatttcaaggaatggtctttgacttcgtaaccaga
caagtttttgacataagcatcatgattctcatctgtcttaacatggtcacaatgatggtg
gaaacagatgaccagagtgaatatgtgactaccattttgtcacgaatcaatctggtgttc
attgtgctgtttactggagagtgtgtactgaagctcatctctctacgccattattacttt
accattggctggaatatttttgattttgtggttgtcattctctccattgtaggtatgttt
ctcgccgagctgatagaaaagtatttcgtgtcccctaccctgttccgagtgatccgtctt
gccaggattggccgaatcctacgtctgatcaaaggagcaaaggggatccgcacgctgctc
tttgctttgatgatgtcccttcctgcattgtttaacatcggcctcctgctcttcctggtc
atgttcatctacgccatctttgggatgtcnnnnnnnnnnaactttgcctatgttaagagg
gaagttgggatcgatgacatgttcaactttgagacctttggcaacagcatgatctgcctg
ttccaaattacaacctctgctggctgggatggattgctagcacccattctcaacagtaag
ccacccgactgtgaccctaataaagttaaccctggaagctcagttaagggagattgcggg
aacccatctgttggaattttcttttttgtcagttacatcatcatatccttcctggttgtg
gtgaacatgtacatcgcggtcatcctggagaacttcagtgttgctactgaagaaagtgca
gagcctctgagtgaggatgactttgagatgttctatgaggtttgggagaagtttgatccc
gatgcaactcagttcatggaatttgaaaaattatctcagtttgcagctgcgcttgaaccg
cctctcaatctgccacaaccaaacaaactccagctcattgccatggatttgcccatggtg
agtggtgaccggatccactgtcttgatatcttatttgcttttacaaagcgggttctagga
gagagtggagagatggatgctctacgaatacagatggaagagcgattcatggcttccaat
ccttccaaggtctcctatcaaccaatcactactactttaaaacgaaaacaagaggaagta
tctgctgttattattcagcgtgcttacagacgccaccttttaaagcgaactgtaaaacaa
gcttcctttacatacaataaaaacaaaatcaaaggtggagctaatcttataaaagaagac
atgataattgacagaataaatgaaaactctattacagaaaaaactgatctgaccatgtcc
actgcagcttgtccaccttcctatgaccgggtgacaaagccaattgtggaaaaacatgag
caagaaggcaaagatgaaaaagccaaagggaaataa
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integrated database retrieval system
