Entry |
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Symbol |
FOCAD
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Name |
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KO |
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Organism |
csab Chlorocebus sabaeus (green monkey)
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Brite |
KEGG Orthology (KO) [BR:csab00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:csab03019]
103219387 (FOCAD)
Messenger RNA biogenesis [BR:csab03019]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
103219387 (FOCAD)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
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Position |
12:complement(58788824..59097607)
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AA seq |
1918 aa
MLFLGLTPHCGAAPQPAPARSPPRSSSAAELGSAAHAAFQPQCAARALDARARESGRAGR
RQRRRNRASRCAAHWLSSAVPAPGCSRRRGGPRQAAGAGLSLWQKGEAAYIHVREAKMSD
DIRKRFEFPNSLIQSQAVGHLIAAVLKENGFSEKIHQSTNQTPALNLLWEKCCSDNVVVR
TACCEGLVALVAQDHAEFSYVLNGILNLIPSTRNTHGLIKAIMKLLQMQALKEGQGGERN
IQNIYTIRNHPHPLITVLEHRPDCWPVFLQQLTAFFQQCPERSEVSCIQIMAPFLWYLYC
EPSQLQEYAKLRLALLKVLLQPQVLCDKDQPSILEQQILQLCCDMVPCLQIKDLIQTTEA
MMFIEEVYLTLLRHPVFWKIQLTQMTLQLLCVCEVSLKITGECSSLIHLLEHCVELLKED
FPVELIIIGIALLLLQTPASQQKPILNLALKLLSVTEDQKIPKSSMLLVMPVLQILSSTA
LEDCISMDEEGPSRQQLALNLLEMIQQECYRDDHQKLSYKLACPVTSMYGSIFTAWTILE
VMRDSSAASDWLASVESLLPITTVIPVPAFLLLAHLLVEDKGQNLHQILKVTTELAQADS
SQVPNLIPVLMFKLGRPLEPMLYNDILYSLPKLGVHKVCVGQILRVIQLLGTTPRLRAVT
LRLLTSLWEKQDRVYPELQRFMAMSDVPSLSVGKEVQWEKLIAKAASIRDICKQRPYQHG
ADMLAAISQVLNECTKPDQATPAALVLQGLHALCQAEVVCIRSTWNALSPKLSCDTRPLI
LKTLSELFSLVPSLTVNTTEYENFKVQVLSFLWTHTQNKDPVVANAAYRSLSNFSAGEHT
ILHLPEKIRPEIPIPEELDDDEDDEDVDLSVPGSCYLKLLSLTPSLVLPALEEFFTSLVK
QEMVNMPRGIYHSALKGGARSDQGKTVAGIPNFILKMYETNKQPGLKPGLAGGMLFCYDV
SMYQSKDGKPLNRLMASRGRSFKQTSLALVHEVHIQLSEWHRAIFLPQAWLAYMSRAYHA
ILQGRLGELELQLKHAKEEPEEVQYKKSTAWLWVRDMLTDEITKAAAKESPVVKGNALLA
LSSLAVVVSRHEASLSSDSDGLLEVQPNFLSMKEWISMVLDTLLVIVDSHYQPRGRLLSW
FYYKSYSGENTASAIARSAAATALSLLVPVFIISCKEKVEEILNMLTARLPGKPSADESQ
AVQIHMGLALGMFLSRLCEEKLSDISGQEMNLLLMKSLDALENCCFDTSLEYNTGCILGV
GLVLSLMSHSSQMQSRVHVAASLRKLSAYLDDSGSQSRTFQEVLAYTLSCVCTSAFSAGI
IEAAEAEDVMNKLRLLVENSQQTSGFALALGNIVHGLSVCGHGKAEDLSSKLLPAWIRIV
LTEGTPTMLCLAALHGMVALVGSEGDVMQLKSEAIQTSHFQGRLNEVIRTLTQVISVSGV
IGLQSNAIWLLGHLHLSTLSSSQSRASVPTDYSYLPESSFIGAAIGFFITGGKKGPESVP
PSLLKLVMKPIATVGESYQYPPVNWAALLSPLMRLNFGEEIQQLCLEIMVTQAQSSQNAA
ALLGLWVTPPLIHSLSLNTKRYLLISVPLWIKHISDEQILGFVENLMVAVFKAASPLGNP
ELCPSALQGLSQAMKLPSPAHHLWSLLSEATGKIFDLLPNKIRRKDLELYISIAKCLLEM
TDDDANRIAQVTKSNIEKAAFVKLYLVSQGRFPLMNLTDMLSVAVQHREKEVLAWMILHS
LYQARIVSHANTGVLKRMEWLLELMGYIRNVAYQSTSFQNMALDEALDFFLLIFATAVVA
WADHAAPLLLGLSASWLPWHQENGPAGPVPSFLGRSPMHRVTLQEVLTLLPNSMALLLQK
EPWKEQTQKFIDWLFSIMESPKEALSAKSRDLLKATLLSLRVLPEFKKKAVWTRAYGW |
NT seq |
5757 nt +upstreamnt +downstreamnt
atgcttttccttgggctaactcctcactgcggtgctgctcctcagccagcccccgcgcgc
agccctccccgcagcagctcagctgcggagctcgggtccgccgcccacgccgccttccaa
ccgcagtgcgcggcccgggccttagacgcgcgtgcgcgcgagtcggggagggcgggccgc
aggcagaggaggcggaacagggcctcgcgatgtgcagcccattggctctcttctgcagtc
cccgcccccgggtgttcgaggcggcggggcgggccacgtcaggcagccggcgctgggctg
agcttgtggcagaagggagaagctgcatacatacatgtaagagaagcaaaaatgtcagat
gatatcaggaaaaggtttgaatttccaaattctcttatccaatcacaggctgtgggtcat
cttattgctgcagtcctaaaggaaaatggtttttcagaaaagattcaccaatctacaaat
cagactcctgctttgaacttgctgtgggagaagtgttgcagtgacaatgtagtggttcga
acagcctgctgtgaaggtctggtggcactcgttgctcaggatcatgcagagttcagctat
gttctcaatgggatactcaatctgattccatcaaccagaaatacacatggcttgataaaa
gccattatgaaattactacaaatgcaagctcttaaggaaggacaaggtggggaaaggaat
attcagaatatatataccattagaaatcatcctcatcctttgatcactgtgcttgaacac
agacctgattgctggccagtatttttgcagcagctgacagcgtttttccagcagtgccct
gaaaggtcagaagtttcatgcattcaaataatggcaccatttctgtggtatctgtattgt
gaaccatctcagttacaagaatatgctaaactccgactagccctgctgaaagtcttactt
caaccccaggttctttgtgacaaagatcaaccatcaatactggaacagcagattcttcaa
ctgtgttgtgacatggttccatgtttgcagataaaagatttgatacagacaacagaagcg
atgatgtttattgaggaagtatatttaacccttttgcgtcatcctgttttctggaaaatt
cagcttacccagatgactcttcagctgctgtgtgtctgtgaagtcagcttaaagataact
ggtgaatgttcatctttaattcaccttttagagcactgcgttgaacttctgaaggaggat
tttcctgttgaactgatcataattggaatagctttactacttctacagactccagcaagt
cagcagaagccaatcttaaatctagctttgaagctcctctctgttactgaggatcagaaa
atcccaaagtcctctatgctgttagtgatgccagttctgcagatactatcttctactgcc
ttggaagactgtatatctatggatgaagaaggtccctctaggcagcagttggctctaaac
cttttggaaatgatacagcaggaatgttacagagatgaccaccaaaagctctcctacaag
cttgcgtgccctgtaaccagtatgtatggttcaatatttacagcctggacgattcttgaa
gtaatgagagactcgtctgctgcaagtgactggttggcctcagtagagtcattgcttcct
attactactgtgatccctgtgcctgcttttcttctgctggctcacctccttgttgaagac
aaaggacagaatcttcaccaaatactgaaggtcactacagaattagcccaagcagattcc
tcccaggtgccaaatctgattccagttttgatgttcaaattgggaagaccactggaacct
atgttatataatgatatattgtatagtttacctaagcttggtgttcacaaggtgtgtgta
ggacaaattctacgagtaatacaactacttggaaccaccccacgactaagagctgtcact
ttgcgtttgctgacatcattgtgggaaaagcaggaccgagtctatcctgaactgcagcgt
ttcatggctatgtctgatgtaccttctctttcggtgggcaaggaagtccaatgggagaaa
ctgattgcaaaagcagcatcaatcagagatatatgtaagcagaggccatatcaacatggt
gcagatatgttggcagctatttctcaggtattgaatgaatgcaccaagcctgatcaagct
actccagcagccttggtattacaaggtcttcatgcactctgtcaagctgaggttgtttgc
attcgctctacttggaatgctctctctccaaagctaagttgtgacacaagacctctcatt
ctgaagacactgagtgaactattttctctggttccttctttaacagtcaatacaactgaa
tatgagaattttaaagttcaagtcctcagctttctctggactcatactcaaaacaaggac
ccagttgtagcaaatgctgcgtatagatccctgtccaactttagtgcaggagaacacact
attcttcatctgcctgaaaagataagaccagaaattcccattcctgaagagttggatgac
gatgaagatgatgaggatgtggatctttcagttcctggctcttgctatctcaaactgttg
tcactcaccccctctttggttttaccagctttggaggaattctttacatcacttgtgaag
caagaaatggtgaatatgcctcgtgggatataccactctgcattaaaaggaggtgcccgc
tcagaccaaggaaagactgtagcaggaatccccaattttatattgaaaatgtatgaaaca
aacaaacaaccaggactgaaacctggccttgcaggtggtatgttattttgctacgatgtt
tccatgtatcagagtaaagatggaaaaccattgaatagactgatggccagtagagggcga
agtttcaagcagacttcacttgctcttgtacatgaggttcatatccagctttcagagtgg
caccgtgcgatttttcttccacaggcctggcttgcatacatgagtcgagcttatcatgcc
attttacagggaagactaggagagctggagttgcagttaaaacatgcaaaagaagaaccc
gaggaggtgcagtacaaaaagagcacagcctggctctgggttagagacatgctgactgat
gaaatcaccaaggcagctgcaaaggagagtccggtagtgaaaggcaatgcgctgttagct
ctaagcagccttgctgtcgtcgtgtctagacatgaagccagcctctcctcagactctgac
gggctcctggaggttcaacctaatttcctttcaatgaaagagtggatttccatggtactt
gatacactcttggtcattgtggatagccattaccaacccagagggcggcttctctcctgg
ttttattataagtcctattctggtgaaaacacagctagtgccattgcccgttctgctgcc
gccacggctttgtctctccttgtgccagttttcattatctcttgcaaagagaaggttgag
gaaatcctgaacatgctgactgccaggttacctgggaaaccaagtgctgatgagtctcaa
gccgtgcaaatccacatgggccttgctttagggatgtttctctctcgcttgtgtgaagag
aaactcagtgacatatctggccaagagatgaaccttcttctgatgaagtctttggatgcc
ctggaaaattgctgctttgacactagtcttgaatacaacacgggctgtatattgggagtt
ggacttgttctgtccctcatgagccacagcagccaaatgcagtcccgcgttcatgtggca
gcatcgcttcggaagctgtctgcgtacctagatgacagtgggagccagagcagaacattt
caggaggtccttgcctacacacttagctgtgtatgtacatcagcgttcagtgctggaatt
attgaggctgcagaggctgaggatgttatgaacaagcttcgactattagtggagaatagc
cagcagacttcaggttttgccctggctttaggaaacatagttcatggattgtctgtgtgt
ggacatggaaaagctgaagacttgagcagcaaactacttcctgcctggatcagaattgtt
cttacagagggcactcccacaatgctttgtctggcagctcttcacggcatggtggccttg
gtaggctctgaaggggatgtaatgcagctgaaatcagaagccatccagacctctcatttt
caaggcagacttaatgaagtcattagaaccttaactcaggtcattagtgtctctggggtg
attggtctccagtcaaatgcaatctggcttcttggacatcttcatctatctactctatcc
tcaagtcaaagtagagcctctgttcctactgactatagctatttgcctgaaagcagtttt
attggagcagccattggcttcttcattacaggaggaaaaaaaggtcctgaatctgttcct
ccttctcttcttaaattagtgatgaaacccatagcaactgttggagaaagctaccaatat
cctcctgtgaactgggctgcacttctctctccacttatgaggctaaattttggtgaagag
attcagcaactgtgccttgaaattatggtgacccaggcacagtcatcccagaatgcagct
gcactgttgggcttgtgggtgacgccaccactgatccacagtctgagtctgaataccaaa
agatatctcctgatatctgtacctctgtggataaaacacatctctgatgaacagatcctg
ggttttgttgaaaatttaatggtggcagtttttaaagcagcttccccacttggaaatcct
gagctatgcccaagcgccttacagggtctgagccaggccatgaaactgcccagccctgcc
caccacctctggagtctgctctctgaagctactgggaaaatttttgacctcctgccaaat
aagattcggagaaaggatctagagctgtatatcagcatagcaaaatgcctcttagaaatg
acagacgatgatgccaatcggatcgcccaggttactaagagcaacatagaaaaggctgcc
tttgtcaaactgtacttagtctctcaaggacgattccccctgatgaacctgactgatatg
ctgagtgttgctgtgcagcaccgtgagaaagaggtgctggcctggatgattctgcacagc
ttataccaggcacggattgtgagccatgccaacacgggcgttttgaagagaatggagtgg
ctcttggaactgatgggttatattagaaatgttgcttaccagtcaacatcctttcagaat
atggctcttgatgaggctttggacttcttcttgctgatatttgcaaccgcagtggttgca
tgggccgaccacgctgcccctctcctcctcggtctcagtgccagttggttgccatggcat
caggagaatggcccggctgggccagtaccaagcttccttggcaggagtccaatgcacagg
gtcactctgcaggaagttctcactctgcttcccaatagcatggctctgctgctgcagaaa
gagccatggaaggaacagacccagaagttcattgactggctattcagcatcatggaaagc
cctaaagaagccctctcagcaaagtccagggatcttttgaaagccaccctgctgtccttg
agagttctcccagagtttaagaagaaagctgtatggaccagagcatatggttggtga |