Chlorocebus sabaeus (green monkey): 103219620
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Entry
103219620 CDS
T04361
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting 13 homolog A
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
csab
Chlorocebus sabaeus (green monkey)
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csab04131
]
103219620 (VPS13A)
Membrane trafficking [BR:
csab04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
103219620 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
103219620
NCBI-ProteinID:
XP_007967732
Ensembl:
ENSCSAG00000007781
LinkDB
All DBs
Position
12:88140842..88380966
Genome browser
AA seq
3174 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVDLDTSQLSLGIWKGAVALKNLQIKENALSQLDVPFKVKVG
HIGNLKLIIPWKNLYTQPVEAVLEEIYLLIVPSSRIKYDPIKEEKQLMEAKQQELKRIEE
AKQKVVDQEQHLPEKQDTFAEKLVTQIIKNLQVKISSIHIRYEDDITNRDKPLSFGISLQ
NLSMQTTDQYWVPCLHDETEKLVRKLIRLDNLFAYWNVKSQMFYLNDYDDSLDDLSNGIV
NENIVPEGYDFVFRPISANAKLVMNRRSDFDFSAPKINLDVELHNIAIEFNKPQYFSIME
LLESVDMMTQNMPYRKFRPDVPLHHHAREWWAYAIHGVLEVNVCPRLRMWSWKHIRKHRG
KLKQYKELYKKKLTSKKPPGELLVSLEELEKTLDVLNITIARQQAEVEVKKAGYKIYKEG
VKDPEDNKGWFSWLWSWSEQNTNEQQPDVKPGILEEMLTPEEKSLLYEAIGYSETAVDPT
LPKTFEALKFFVHLKSMSVVLRENHQKAELIDIVIEEFSTLIVQRPGAQAVKFETKIDSF
HITGLPDNSEKPRLLSSLDDAMSLFQITFEINPLDETVTQRCIIEAEPLEIIYDARTVNS
IVEFFRPPKEVHLAQLTSATLTKLEEFRNKTATGLLYIIETQKVLDLRINLKASYIIVPQ
DGIFSPTSNLLLLDLGHLKVTSKSRSELPDVKQGEANLKEIMDIAYDSFDIQLTSIQLLY
SRVGDNWREARKLNVSTQHILVPMHFNLELSKAMVFMDVRMPKFKIFGKLPLISLRISDK
KLQGIMELVESIPKPEPVTEVSAPVKSFQIQTSTSLGTSQISQKIIPLLELPSVSEDDSE
EEFFDAPCSPLEEPLQFPTGVKSIRTRKLQKQDCSVNMTTFKIRFEVPKVLIEFYHLVGD
CELSVVEIHVLGLGTEIEIRTYDLKASAFLKEFCLKCPEYLDENRKPVYLVTTLDNTMED
LLTLEYVKAEKNVPNLKSTYNNVLQLIKVNFSSLDIHLHTEALLNTINYLHNILPQSEEK
SAPVSTTETEDKGDVIKKLALKLSTNEDIITLQILAELSCLQIFIQDQKRNISEIKIEGL
DSEMIMRPSETEINAKLRNIIVLDSDITAVYKKAVYITGKEVFSFKMVSYMDATAGSAYT
DMNVVDIQVNLVVGCIEVVFVTKFLCSILAFIDNFQAAKQALAEATVQAAGMAATGVKEL
ARRSSRMALDINIKAPVVVIPQSPVSENVFVADFGLITMTNTFHMITESQSSPPPVIDLI
TIKLSEMRLYRSQFINDAYQEVLDLLLPLNLEVVVERNLCWEWYQEVPCFNVNAQLKPME
FILSQEDITTIFKTLHGNIWYEKDGSASPAVTKDQYGATSGVTTNASHHSGGATVVTAAV
VEVHSRASLVKATLNMSFKTDYLTMVLYSPGPKQASFTDVRDPSLKLAEFKLENIISTLK
MYTDDSTFSSFSLKNCILDDKRPHVKKATPRMIGLTVGFDKKDMMDIKYRKVRDGCVTDA
VFQEMYICASVEFLQTVANVFLEAYTTGTAVETSVHTWTAKEEVPTQELEKWEINVIIKN
PEIVFVADMTKNDAPALVITTQCEICYKGNLENSTMTAAIKDLQVRACPFLPIKRKGRVT
TVLQPCDLFYQTTQAGTDPQVIDMSVKSLTLKVSPVIINTMITITSALYTTKETIPEETA
SSTAHLWEKKDTKTLKMWFLEESNETEKIAPTTELVPKGEMIKMNIDSIFIVLEAGIGHR
TVPMLLAKSRFSGEGKNWSSLINLHCQLELEVHYYNEMFGVWEPLLEPLEIDQTEDFRPW
NLGIKMKKKAKKAIVESDPEEENYKVPEYKTVISFHSKDQLNITLSKCGLVMLNNLVKAF
TEAATGSSADFVKDLAPFIILNSLGLTISVSPSDSFSVLNVPMAKSYVLKNEESLSMDYV
RTKDNDHFNAMTSLSSKLFFILLTPVNHSTADKIPLTKVGRRLYTVRHRESGVERSIVCQ
IDTVEGSKKVTIRSPVQIRNHFSVPLSVYEGDTLLGTASPENEFNIPLGSYRSFLFLKPE
DEDYQMCEGIDFEEIVKNDGALLKKKCRSQNPSKKSFLINIVPEKDNLTSLSVYSEDGWD
LPYIMHLWPPILLRNLLPYKIAYYIEGIENSVFTLSEGHSAQICTVQLDKARLRLKLLDY
LNHDWKSEYHIKPNQQDISFVNFTCITEMEKTDLDIAVHMTYNTGQTVVAFHSPYWMVNK
TGRMLQYKADGIHRKHPPNYKKPVLFSFQPNHFFNNNKVQLMVTDSELSDQFSIDTVGSH
GAVKCNGLKMDYQVGVTIDLSSFNITRIVTFTPFYMIKNKSKYRISVAEEGTDKWLSLDL
EQCIPFWPEDASSKLLIQVEGSEDPPKRIYFNKQENCILLRLDNELGGIIAEVNLAEHST
VITFLDYHDGAATFLLINHTKNELVQYNQSSLSEIEDSLPPGKAVFYTWADPVGSRRLKW
RCRKSHGEVTQKDDMMMPIDLGKKTIYLVSFFEGLQRIILFTEDPKVFKVTYESEKAELA
EQEIAVALQDVGISLVNNYTKQEVAYIGITSSDVVWETKPKKKARWKPMSVKHTEKLERE
FKEYTESSPSEDKVIELDTNIPVRLTPTGHNMKILQPRVIALRRNYLPALKVEYNTSAHQ
SSFRIQIYRIQIQNQIHGAVFPFVFYPVKPPKSVTMDSAPKPFTDVSIVMRSAGHSQISR
IKYFKVLIQEMDLRLDLGFIYALTDLMTEAEVTENTEVELFHKDIEAFKEEYKTASLVDQ
SQVSLYEYFHISPLKLHLSVSLSSGGEEAKDSKQNGGLTPVHSLNLLLKSIGATLTDVQD
VVFKLAFFELNYQFHTTSDLQSEVIRHYSKQAIKQMYVLILGLDVLGNPFGLIREFSEGV
EAFFYEPYQGAIQGPEEFVEGMALGLKALVGGAVGGLAGAASKITGAMAKGVAAMTMDED
YQQKRREAMNKQPAGFREGITRGGKGLVSGFVSGITGIVTKPIKGAQKEGAAGFFKGVGK
GLVGAVARPTGGIIDMASSTFQGIKRATETSEVESLRPPRFFNEDGVIRPYRLRDGTGNQ
MLQVMENGRFAKYKYFTHVMINKTDMLMITRRGVLFVTKGTFGQLTCEWQYSFDEFTKEP
FIVHGRRLRIEAKERVKSVFHAREFGKIINFKTPEDARWILTKLEEAREPSPSL
NT seq
9525 nt
NT seq
+upstream
nt +downstream
nt
atggttttcgagtcggtagtcgtggacgtattgaaccggttcttgggggactatgtggtg
gacctggacacgtcccagctctctctgggcatctggaaaggagctgtggccctcaagaat
cttcaaattaaagaaaatgccctgagtcaactggatgtaccatttaaagttaaagttggt
cacataggtaatcttaaacttataattccatggaaaaacctttatactcaacctgttgaa
gctgtattggaagaaatttatttactcatagtgccttcttctagaataaaatatgatcct
ataaaagaagagaaacaactcatggaagcaaagcaacaggaactgaaaagaatagaagaa
gcaaaacaaaaagtagttgatcaagaacaacatctgccggaaaaacaggacacttttgca
gaaaaattagttacacagatcataaaaaatcttcaagtgaaaatttccagtatccatatt
cgttatgaagatgatatcacaaatcgggacaaaccgctgtcatttggtatttcccttcaa
aatctcagcatgcagacaactgatcaatactgggttccatgtttacatgatgaaactgag
aaactagttcgtaagttaatccgattggataacctttttgcctattggaatgtgaagtct
cagatgttttatcttaatgattatgatgactccttggacgacttgagcaatggcattgtc
aatgaaaatattgttccagaaggttatgattttgtgtttcgtcccatatctgctaatgcc
aaacttgtgatgaatcgccgatctgattttgacttttctgcccccaaaataaacttggat
gttgagttacataacatagcaattgaatttaataaaccacagtatttcagtattatggag
cttcttgaatcagttgatatgatgacacaaaatatgccatataggaagttcagacctgac
gtgcctcttcaccaccatgccagagaatggtgggcttatgctatacatggtgttcttgaa
gtaaatgtttgccccaggttacggatgtggtcgtggaagcatattagaaaacatagggga
aaactgaagcaatataaagaactgtataaaaaaaagttaacaagtaagaagccacctggt
gaacttctcgtgtctttggaggagttggaaaaaaccttggatgtccttaatataactata
gctagacagcaggcagaagttgaggtaaagaaagctggatacaaaatttacaaagaagga
gtaaaagatccagaggataataaagggtggtttagctggctatggtcttggtcagaacaa
aatactaatgaacagcaaccagatgttaaacctggaattcttgaagaaatgttgacacct
gaagaaaaatctttactctatgaagcaattggctatagtgaaacagcagttgatccaact
ttgccaaaaacatttgaagccttgaagttttttgtccacttgaaaagtatgtctgttgtt
ctaagagaaaatcatcaaaaagctgagctgatagatattgtaatagaagaatttagcacc
ttaattgtgcaaagaccaggagcgcaagcagtaaaatttgaaactaaaatagattcattt
catattactggcttaccagataattcagaaaaaccccgcctcctgtcttcattggatgat
gcaatgtcactcttccaaattacatttgagataaatccattagatgaaactgttactcag
aggtgtatcatagaagctgaacctttagaaatcatatatgatgcaaggacagtgaatagt
atagtggaattcttcagacctccaaaagaggtacatctagcacagctcacttcagcaaca
ttgacaaaactggaagaatttcgcaataagacagcaacaggactactgtatattattgaa
acacagaaagttcttgatctcagaattaatttgaaggcttcatatattattgtcccacaa
gatggaatttttagtcctacatcaaatctgcttcttttggaccttggtcatcttaaggtg
acaagtaaaagtcgttctgaattaccagatgtgaaacaaggtgaggccaatcttaaagag
ataatggatatagcttatgattcctttgatattcaacttacaagcatacagctgctttac
agtagagttggtgataattggagagaagcacgaaaactcaatgtatctacccagcatatt
ttggtacccatgcacttcaatttggaactgtctaaggccatggttttcatggatgtaagg
atgcccaaattcaagatttttgggaagttacctcttatttctttacgaatctcagataaa
aaactacaaggaattatggaattggttgaaagcattccaaaacctgaaccagtaactgaa
gtatctgcccctgtcaaatcattccagattcaaacatctacttctttgggaacatcacag
atttcacagaaaataattcctctcttggaacttccgtctgtttctgaagatgattcagag
gaggaattttttgatgcaccatgtagtcccttggaagaacctcttcagttcccaactgga
gttaaaagtattcgaaccagaaagttacaaaagcaggattgttcagtgaatatgactacg
tttaaaatacgatttgaagtaccaaaggttttgatcgagttttatcaccttgttggagat
tgtgaactatctgtggtagaaattcatgttttaggattgggcacagaaattgagattaga
acatacgatttgaaagcaagtgcctttttgaaagagttctgcttaaaatgcccagaatac
ttggatgaaaacaggaaaccagtttatttggttacaaccctggataacacaatggaagac
ctgttaacgctggaatatgtaaaggctgaaaagaatgtacccaacttgaaaagtacctat
aacaatgttttacaattgattaaggtaaatttttcctctttggatattcatttacacact
gaagcacttctgaatacaataaattatcttcataatatccttccgcaatcagaggaaaaa
tcagccccagtgtccactacagagactgaagacaaaggagatgtcattaaaaaattagct
ttgaaactatccacgaatgaagatatcattactttgcagattttagcagaattatcatgt
ttacagatctttattcaagatcagaaacgtaacatttctgaaattaagattgaagggctt
gattctgagatgattatgaggccttcagaaactgaaataaatgcaaagctaaggaatata
attgttttagattctgatataacagctgtatacaaaaaggctgtttatatcactggaaaa
gaagttttcagcttcaaaatggtttcttacatggatgcaactgctggttctgcatacaca
gatatgaatgtggttgacattcaggttaatttagtagttggttgcattgaagtagttttt
gtcacaaaatttctatgttctatattggcttttatagataattttcaggcagctaaacaa
gccttggctgaggcaactgttcaggcagctggaatggctgctactggtgtaaaagaactg
gcacgaaggagttccagaatggcactggatattaacatcaaagccccagttgtggtcatc
ccgcagtctccagtttctgaaaatgtttttgttgctgattttgggctaattacaatgaca
aatacctttcatatgataacagagagccagagctctcccccacctgttattgatttgata
acaataaagctgagtgaaatgcgactatacaggtctcaatttattaatgatgcataccag
gaagtactggatctactactgccgttaaatctggaggtggtggttgaacgaaatttatgc
tgggagtggtaccaggaagttccttgttttaatgtaaatgctcagctgaaaccaatggag
ttcattcttagtcaagaagatataacaactatttttaaaacattgcatggcaatatatgg
tatgaaaaagatggtagtgcctcacctgctgtaacaaaagaccaatatggtgccactagt
ggagttactactaatgcttcacaccattcaggaggagcaactgtggtgacagctgccgtg
gtagaagtacattcacgtgcctccctagttaaggcaacactaaacatgagcttcaaaact
gattatctcaccatggtgctgtatagtccaggtcctaaacaagcttcctttacagatgtt
cgggatccttctctgaaacttgctgaatttaaattggagaatataataagtactttaaaa
atgtatacagatgactcaacattttcttccttctcattaaaaaactgtattttagatgat
aaaaggcctcatgtcaagaaagcaactcctcgaatgataggactgactgttggttttgac
aaaaaagatatgatggatataaagtacaggaaagtcagagatggctgtgtgactgatgca
gtctttcaagaaatgtatatttgtgcaagtgtagaatttctgcagactgttgcaaatgtc
tttcttgaggcctacaccacaggcactgctgtagaaaccagtgtgcacacatggactgct
aaggaagaagtacctacacaggaattagagaagtgggaaattaatgttattattaaaaat
cctgaaattgtgttcgtggctgacatgacaaaaaatgatgctcctgccttagtcattaca
acacaatgtgaaatttgctataaaggtaaccttgaaaatagcacaatgactgctgctatt
aaagatctccaagtgagagcctgcccgtttcttccaatcaagagaaaaggcagagtcact
actgttttgcagccctgtgacttgttttatcaaactactcaggcaggtacagatccacaa
gtgatcgatatgtcagtaaaatccctgacactaaaggtttcaccagttattataaatact
atgattaccataacttcagcactgtatacaactaaggaaaccatcccagaagaaacagct
tcttctactgcacatttatgggaaaagaaggatacaaagactttaaaaatgtggtttctt
gaagaatcaaatgaaactgaaaaaatagctcccacaactgaattggtacccaaaggcgag
atgataaaaatgaacattgattctatttttatagttcttgaggctggaattggtcataga
acagtgcctatgcttctggcaaagtcacgtttttcaggggaaggcaaaaactggagttcc
ctaataaatctgcactgtcagcttgagctagaagtgcattattataatgaaatgtttggt
gtttgggagcctttgcttgaacccttagaaattgatcagactgaggattttagaccgtgg
aatcttggtatcaagatgaaaaagaaagccaaaaaggccattgttgagtcagatcctgaa
gaagaaaactacaaagtgccagaatataaaactgtcattagtttccattcaaaagaccaa
ttaaacatcacattatccaaatgtggtcttgtaatgttaaataacttagtcaaggcattt
acagaagctgccactggatcttcagctgacttcgtaaaggatctagcaccatttataatt
ttaaattcccttggacttactatctctgtttcgccaagtgattcttttagtgtactgaac
gttcctatggcaaaatcatatgtattgaaaaatgaagaaagtttaagtatggattatgtc
cgaaccaaggacaatgatcatttcaatgcaatgaccagcctaagcagcaaactcttcttc
attcttcttacacctgttaaccattctactgctgataagattcctttaacaaaagtggga
cgacgtctgtacactgtaagacacagagagtctggagttgaaagatctattgtttgtcaa
attgatacagtggaaggaagtaagaaggtcacaattcgctccccagtgcagataagaaat
catttttcagtcccactgtctgtttacgaaggggataccttattgggaactgcctcacct
gaaaatgaattcaacataccattaggatcttaccgatcattcctttttctgaagccagaa
gatgaggactatcaaatgtgtgaaggaattgactttgaagagattgtgaaaaatgatggt
gctcttctaaagaagaaatgtagatctcaaaacccttccaagaaatcatttctcattaat
attgttccagaaaaagataatttaacgtctctatcagtgtattcagaagatggttgggat
ttaccatacataatgcatttgtggccacctatcctgctccgaaatcttcttccttacaaa
attgcttattatatagagggaattgaaaattcagtttttactctaagtgaaggacattca
gcccagatttgtactgtacagttggataaagccaggctacgtttaaaattacttgactat
ctcaatcacgattggaaaagtgaatatcacataaagcctaatcagcaagacattagtttt
gtcaattttacctgtattacagaaatggaaaagactgatttagatattgctgtccatatg
acttataatactggtcagacagttgtggcatttcatagtccttattggatggtcaacaaa
actggtcgcatgttacagtacaaagcagacggaattcatcgaaagcatccacctaattat
aaaaagccagttctcttttcttttcagccaaatcacttttttaataacaataaggttcaa
cttatggtaactgatagtgaattatccgatcaattttcaattgatactgttggtagtcat
ggagctgttaaatgtaacggcctgaaaatggactatcaagttggtgtcactatagacctg
agcagttttaacattactagaattgtgacatttacccctttttatatgattaaaaacaaa
agcaaataccgtatatcagtggcggaagaaggaactgataaatggctctctcttgatttg
gagcagtgtatccccttttggcctgaggatgcttctagtaaacttcttattcaagttgaa
gggagtgaagatcctcccaaaaggatatattttaacaagcaagaaaattgtattctattg
cgtctggataacgagcttggaggtattatagcagaagtgaatttggctgagcattctaca
gttattacatttttagattatcatgatggagcagctacattcctcttaataaatcacaca
aagaatgaacttgttcaatacaatcaaagttctctcagtgaaatagaagattccctccct
cctggaaaagcagtgttttatacatgggctgatccagtgggctctagaaggctgaagtgg
agatgtagaaaaagccatggtgaagtaacacaaaaggatgatatgatgatgcctatagat
ttggggaaaaagactatttatttagtttcattctttgaaggtttacaacgcattatttta
ttcactgaagatccaaaggtatttaaagtaacatatgaaagtgagaaagcagagttagca
gagcaagaaattgcagtggcattacaagatgttggaatttctcttgtcaacaattacacg
aagcaagaagtagcctatataggcatcacaagttctgatgtggtttgggagacaaagccc
aagaagaaggcaagatggaagccaatgagtgtaaagcacactgagaagttagagagagaa
tttaaggaatatactgaatcttcaccttcagaagataaggttattgagttggacactaac
attccggttcgcttaacacctactggtcataacatgaaaattctgcagccgcgtgtaata
gctctacgaagaaattatcttccagcattaaaagtggaatataacacatctgcacatcaa
tcatcatttagaattcaaatctacagaatacagatccaaaatcagatacatggtgctgtg
tttccctttgtgttttatcctgttaaacctccaaagtccgtcaccatggattcagcacca
aagccctttacagatgtcagtattgtcatgagatctgcaggacattcccagatatcacgt
attaagtatttcaaagtattgattcaagaaatggatctcaggttagatcttgggtttatc
tatgctttaacagaccttatgacagaagctgaggtaactgaaaatacagaggttgagctt
tttcataaagatatagaagctttcaaagaagaatataaaacagcctcattagtagatcaa
tcacaagtcagcctctatgaatattttcatatatctcctcttaagttacatttaagtgtt
tcactgagttcgggcggagaagaagctaaagattcgaaacaaaatggaggactgactcca
gttcattctttaaatcttttgctgaagagtattggtgccacactgacagatgtacaagat
gtagtttttaagcttgcattttttgaactcaactatcagttccatacaacatccgaccta
cagtctgaggtcataagacactattcaaaacaggccattaagcagatgtatgtactcatt
cttggacttgatgttttgggaaatccatttggcttaattagagaattttctgaaggtgta
gaagcattcttttatgaaccttaccagggagccatccagggtcctgaagagtttgtggag
ggaatggcactaggacttaaggcactagttggtggagctgttggtggattagcgggtgct
gcctccaaaatcaccggtgctatggctaaaggggtagcagctatgaccatggatgaagac
taccaacagaagagaagagaagccatgaataagcaaccagctggttttagagaaggcatc
actcgtggaggaaaaggcttagtttctggatttgttagtggcataacaggaattgttaca
aaaccaatcaaaggagctcaaaaagaaggagcagctggtttctttaaaggtgttgggaaa
ggtttagtgggagcggtagctaggccaactggaggcatcatagacatggctagcagtaca
tttcagggaataaaaagagctacagagacttctgaagtggagagtctgcgacctcctcgg
ttcttcaatgaagatggagttatcagaccgtacaggttgagggatggtactggaaatcag
atgttacaggtcatggaaaatggaagatttgcaaaatacaaatattttacccacgtcatg
atcaataagacagatatgctaatgataaccagacgtggtgtattgtttgtaacaaaggga
acatttggacagctcacgtgtgagtggcagtatagctttgatgagttcaccaaagagcca
ttcattgttcacgggagaagactgcgcattgaagcaaaggaacgagtgaagtctgtattt
catgccagagagtttggaaaaataattaacttcaagaccccagaggatgccaggtggatc
cttacaaagctcgaagaagcaagagaaccttctccgagcctctga
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integrated database retrieval system
