Chlorocebus sabaeus (green monkey): 103234884
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Entry
103234884 CDS
T04361
Symbol
SYMPK
Name
(RefSeq) symplekin
KO
K06100
symplekin
Organism
csab
Chlorocebus sabaeus (green monkey)
Pathway
csab03015
mRNA surveillance pathway
csab04530
Tight junction
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103234884 (SYMPK)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04530 Tight junction
103234884 (SYMPK)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
csab03021
]
103234884 (SYMPK)
03019 Messenger RNA biogenesis [BR:
csab03019
]
103234884 (SYMPK)
Transcription machinery [BR:
csab03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103234884 (SYMPK)
Messenger RNA biogenesis [BR:
csab03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
103234884 (SYMPK)
U7-dependent histone pre-mRNA processing factors
103234884 (SYMPK)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
PDS5
Cnd1
Cohesin_HEAT
Motif
Other DBs
NCBI-GeneID:
103234884
NCBI-ProteinID:
XP_007995449
Ensembl:
ENSCSAG00000003115
LinkDB
All DBs
Position
6:complement(39264850..39308912)
Genome browser
AA seq
1343 aa
AA seq
DB search
MPLSRDEAWAGSDCALDSISRRPWVWGACAQFPATNGRWRRRWRSLGRGAAEGARGERRP
EPRDKLTAAMASGSGDSVTRRSVASQFFTQEEGPGIDGMTTSERVVDLLNQAALITNDSK
ITVLKQVQELIINKDPTLLDNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIELLLKLI
ANLNMLLRDENVNVVKKAILTMTQLYKVALQWMVKSRVISELQEACWDMVSAMAGDIILL
LDSDNDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEE
GKAALEQLLKFMVHPAISSINLTTALGSLANIARQRPMFMSEVIQAYETLHANLPPTLAK
SQVSSVRKNLKLHLLSVLKHPASLEFQAQITTLLVDLGTPQAEIARNMPSSKDTRKRPRD
DSDSTLKKMKLEPNLGEDDEDKDLEPGPSGTSKASAQISSQSDTDITAEFLQPLLTPDNV
ANLVLISMVYLPEAMPASFQAIYTPVESAGTEAQIKHLARLMATQMTAAGLGPGVEQTKQ
CKEEPKEEKVVKTESVLIKRRLSAQGQAISVVGSLSSMSPLEEEAPQAKRRPEPIIPVTQ
PRLAGAGGRKKIFRLSDVLKPLTDAQVEAMKLGAVKRILRAEKAVACSGAAQVRIKILAS
LVTQFNSGLKAEVLSFILEDVRARLDLAFAWLYQEYNAYLAAGASGSLDKYEDCLIRLLS
GLQEKPDQKDGIFTKVVLEAPLITESALEVIRKYCEDESRTYLGMSTLRDLIFKRPSRQF
QYLHVLLDLSSHEKDKVRSQALLFIKRMYEKEQLREYVEKFALNYLQLLVHPNPPSVLFG
ADKDTEVAAPWTEETVKQCLYLYLALLPQNHKLIHELAAVYTEAIADIKRTVLRVIEQPI
RGMGMNSPELLLLVENCPKGAETLVTRCLHSLTDKVPPSPELVKRVRDLYHKRLPDVRFL
IPVLNGLEKKEVIQALPKLIKLNPIVVKEVFNRLLGTQHGEGNSALSPLNPGELLIALHN
IDSVKCDMKSIIKATNLCFAERNVYTSEVLAVVMQQLMEQSPLPMLLMRTVIQSLTMYPR
LGGFVMNILSRLIMKQVWKYPKVWEGFIKCCQRTKPQSFQVILQLPPQQLGAVFDKCPEL
REPLLAHVRSFTPHQQAHIPNSIMTILEASGKQEPEAKEAPAGPLEEDDLEPLALAPAPA
PRPPQDLIGLRLAQEKALKRQLEEEQKLKPGGVGAPSSSSSSLSPSARPGPPPSEEAMDF
REEGPECETPGIFISMDDDSGLTEAALLDSSLEGPLPKETAAGGLTCKEERSPQTLAPIG
EDVVKTPSPAAEDAREPEAKGNS
NT seq
4032 nt
NT seq
+upstream
nt +downstream
nt
atgccgctctcacgggacgaggcatgggcggggtcggactgtgctctggactccatttcc
cggcggccctgggtgtggggcgcgtgcgcacagttcccggcgacgaacggaagatggcgg
cggcggtggcggagtctaggaagaggcgctgctgagggggcgcgaggggaacggaggccg
gagccgcgggacaagctgacggcagccatggcgagtggcagtggggacagcgtcacccgc
cggagtgtggcatcacagtttttcactcaagaggaggggccgggaatcgatggcatgacc
acctcagagagggtggtggatcttctgaaccaggcggcgctgatcaccaatgactcaaag
atcacagtgctcaaacaggtccaggagctgatcatcaacaaagaccccacactactggac
aacttcctggacgagatcatcgcattccaagcagacaagtcaattgaagtgcgaaaattt
gtcatcggcttcatcgaggaggcatgcaagcgagacattgagttgctgctgaaactcatt
gcaaacctcaacatgctcttgagggacgagaatgtgaacgtggtgaagaaggctatcctc
accatgacccaactttacaaggtggccctgcagtggatggtgaagtcacgggtcattagc
gagctgcaagaggcctgctgggacatggtatctgccatggcgggggacatcatcttactg
ttggactctgacaatgacggcatccgcacccatgccatcaagtttgtggagggcctcatt
gtcaccctgtcaccccgcatggctgactcggagataccccgacgccaggagcatgatatc
agcctggaccgcatccctcgtgaccacccctacatccagtacaacgtactatgggaagag
ggcaaggcagccttggagcagctgcttaagttcatggtgcaccctgccatctcttccatc
aacctgacaacagcgctgggctccctcgccaatatcgcccgccagagacccatgttcatg
tctgaggtgatccaggcctatgaaactctgcatgccaacctgcccccgacgctggccaaa
tcgcaggtgagcagcgtgcggaagaatctgaagctgcacctgttgagtgtgctgaagcac
ccggcctccttggagttccaggcccagatcaccaccctgctggtggacctgggcacacct
caggctgagatcgcccgcaacatgccgagcagcaaggacacccgcaagcggccccgcgat
gactcggactccacactcaagaagatgaagctggagcccaacctgggggaggacgatgag
gacaaggacttggagccaggcccatcaggaacctcaaaggcctcagcccagatctccagc
cagtcagacacggacatcacagctgagttcctgcagcctctgctgacgcctgataatgtg
gccaatctggtcctcatcagcatggtgtacctgcccgaggccatgccagcctcctttcag
gccatctacacccctgtggagtcagcaggcacagaagcccagatcaagcacctggctcgg
ctcatggccacacagatgacagctgccggactgggaccaggtgtagagcagaccaaacag
tgcaaggaggagcccaaggaggagaaggtggtgaagacagagagcgtcctgatcaagcga
cgcctgtcagcccagggccaagccatctcggtggtgggctccctgagctccatgtcccct
ctggaggaagaggcaccgcaggccaaaaggaggccagagcccattatccctgtcactcag
ccccggctggcaggcgccggggggcgcaagaaaatattccgtctcagcgacgtgctgaag
cccctgactgatgcccaggtggaagccatgaagctgggcgctgtgaagcggatcctgcgg
gctgagaaggctgtggcctgcagcggggcagcccaggtccgcataaagatcctggccagc
ctggtgacacagttcaactcgggcctgaaggcggaggtcctgtccttcatcctggaggat
gtgcgggcccgcctggacctggccttcgcctggctctaccaggagtacaacgcctatctg
gccgcgggtgcctcaggctccctggacaagtatgaggactgccttatccgcctgctgtcc
ggcctgcaggagaaaccagaccagaaggatgggatcttcaccaaggttgtgctggaggcg
ccactcatcacagagagtgccctggaggtgatccgcaagtactgcgaggatgagagtcgc
acctacctgggcatgtccacgcttcgagacctgatcttcaagcgcccgtcccgccagttc
cagtacctgcatgtccttctcgacctcagctcccatgagaaggacaaggtgcgctcccag
gccctgctgttcatcaaacgcatgtatgagaaggagcagctgcgggagtatgtggagaaa
tttgccctcaactacctgcagctcctggtgcaccccaacccaccgtctgtgctgtttgga
gctgacaaagacacagaggtggcagcgccctggacggaggagacagtgaagcagtgtctc
tacctctacctggctctcctgcctcagaaccacaagctgatccacgagctggcggccgtg
tacactgaagccatcgccgacatcaagcggacggtgctgagggtcatcgagcagccgatc
cgaggaatgggcatgaactccccggagctgctcctgctggtggaaaactgtcccaagggg
gcagagacactggtcacacgatgtctgcacagcctcacagacaaagtcccaccctccccg
gagctggtgaagcgggtccgggatctctaccacaagcgactgccagacgtccgcttcctc
atcccggtgctcaatgggctggagaagaaagaggtgatccaggccctgcctaaactcatc
aaactcaaccccatcgtggtgaaggaagtcttcaaccgcctgctgggcacccagcatggt
gagggaaactcagccttgtccccgctgaaccctggagagctcctgatcgcattacacaac
atcgactctgtgaagtgcgacatgaaatccatcatcaaagccaccaacctgtgctttgcg
gagcggaacgtgtacacgtcagaggtgctggccgtggtgatgcagcagctgatggagcag
agccccctgcccatgctgctcatgaggaccgtcatccagtccctgaccatgtacccccgc
ctggggggcttcgtcatgaacatcttgtcccgcctcatcatgaaacaggtgtggaagtat
cccaaagtgtgggagggcttcatcaagtgctgccagcgcaccaagccccagagcttccag
gtcatcctgcagctgccgccccagcagctgggagccgtctttgacaagtgccctgagctc
cgggagcctctgctggcccatgtccgctccttcaccccccaccagcaagctcatatccct
aactccatcatgaccatcttggaggccagcggcaagcaggagccagaggccaaggaagcg
cctgctgggcccttggaggaggacgacctggagcctctggccttggccccggccccggcc
ccccggcccccgcaggacctcattggcctgcggctggcccaggagaaggccttaaagcgg
cagctggaggaggagcagaagctgaagccgggaggagtgggagccccctcctcttcctcc
tcctctctctctccctcggcccggccgggcccgcccccgtctgaggaagccatggatttc
cgggaggaggggcctgagtgcgagaccccgggcatcttcatcagcatggatgacgactca
gggctgaccgaggccgcgctgctggactctagtctcgagggccccctacccaaggagacg
gcagcgggcgggctgacctgtaaggaggagcggagcccccagaccctggcacctattgga
gaagatgtcgtgaagacccccagcccggctgccgaggacgccagggaacccgaggccaag
gggaacagctga
DBGET
integrated database retrieval system