Entry |
|
Symbol |
HELZ
|
Name |
(RefSeq) helicase with zinc finger
|
KO |
K25168 | helicase with zinc finger domain [EC:5.6.2.-] |
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Organism |
csab Chlorocebus sabaeus (green monkey)
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Brite |
KEGG Orthology (KO) [BR:csab00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:csab03019]
103243163 (HELZ)
Messenger RNA biogenesis [BR:csab03019]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
103243163 (HELZ)
3'-5' decay
Other 3'-5' decay factors
103243163 (HELZ)
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SSDB |
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Motif |
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Other DBs |
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LinkDB |
|
Position |
16:54196505..54369015
|
AA seq |
1943 aa
MEDRRAEKSCEQACESLKRQDYEMALKHCTEALLSLGQYSMADFTGPCPLEIERIKIESL
LYRIASFLQLKNYVQADEDCRHVLGEGLAKGEDAFRAVLCCMQLKGKLQPISTILAKSLT
GESLNGMVTKDLTRLKTLLSETETATSNALSGYHVEDLDEGSCNGWHFRPPPRGITSSEE
YTLCKRFLEQGICRYGAQCTSAHSQEELAEWQKRYASRLIKLKQQNENKQLSGSYMETLI
EKWMNSLSPEKVLSECIEGVKVEHNPDLSVTVSTKKSHQTWTFALTCKPARMLYRVALLY
DAHRPHFSIIAISAGDSTTQVSQEVPENCQEWIGGKMAQNGLDHYVYKVGIAFNTEIFGT
FRQTIVFDFGLEPVLMQRVMIDAASTEDLEYLMHAKQQLVTTAKRWDSSSKTIIDFEPNE
TTDLEKSLLIRYQIPLSADQLFTQSVLDKSLTKSNYQSRLHDLLYIEEIAQYKEISKFNL
KVQLQILASFMLTGVSGGAKYAQNGQLFGRFKLTETLSEDTLAGRLVMTKVNAVYLLPVP
KQKLGQTQGTKEKVYEATIEEKTKEYIFLRLSRECCEELNLRPDCDTQVELQFQLNRLPL
CEMHYALDRIKDNGVLFPDISMTPTIPWSPNRQWDEQLDPRLNAKQKEAVLAITTPLAIQ
LPPVLIIGPYGTGKTFTLAQAVKHILQQQETSRILICTHSNSAADLYIKDYLHPYVEAGN
PQARPLRVYFRNRWVKTVHPVVHQYCLISSAHSTFQMPQKEDILKHRVVVVTLNTSQYLC
QLDLEPGFFTHILLDEAAQAMECETIMPLALATQNTRIVLAGDHMQLSPFVYSEFARERN
LHVSLLDRLYEHYPAEFPCRILLCENYRSHEAIINYTSELFYEGKLMASGKQPAHKDFYP
LTFFTARGEDVQEKNSTAFYNNAEVFEVVERVEELRRKWPVAWGKLDDGSIGVVTPYADQ
VFRIRAELRKKRLSDVNVERVLNVQGKQFRVLFLSTVRTRHTCKHKQTPIKKKEQLLEDS
TEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSIGRCRKFWERFIALCHENNSLHG
ITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRLQHSGSTNKQQQSPPKGKSLHHTQND
HFQNDGIVQPNPSVLIGNPIRAYTPPPPLGPHPNLGKSPSPVQRIDPHTGTSILYVPAVY
GGNVVMSVPLPVPWTGYQGRFAVDPRIITHQAAMAYNMNLLQTHGRGSPIPYGLGHHPPV
SIGQPQNQHQEKDQHEQNRNGKSDTNNSGPEITKIRTPEKKPTEPKQVDLESNPQNRSPE
SRPSVVYPSTKFPRKDNLNPRHINLPLPAPHAQYAIPNRHFHPLPQLPRPPFPIPQQHTL
LNQQQNNLPEQANQMPPQPNQVVQQQSQLNQQPQQPPPQLSPAYQAGPNNAFFNNAVAHR
PQSPPAEAVISEQQPPPMLQEGHSPLRAITQPGPILPSHLNSFIDENPPGLPIGEALDRI
HGSVALETLRQQQARFQQWSEHHAFLSQGSVPYPHHHHPHLQHLPQPPLGLHQPPVRADW
KLTSSAEDEVETTYSRFQDLIRELSHRDQSETRELAEMPPPQSRLLQYRQVQTRSPPAVP
SPPSSTDHSSHFSNFNDNSRDIEVASNPAFPQRLPPQIFSSPFSLPSEHLAPPPLKYLAP
DGAWTFANLQQNHLMGPGFPYGLPPLPHRPPQNPFVQIQNHQHAIGQEPFHPLSSRTVSS
SSLPSLEEYEPRGPGRPLYQRRISSSSVQPCSEEVSTPQDSLAQCKELQDHSNQSSFNFS
SPESWVNTTSSTPYQNIPCNGSSRTAQPRELIAPPKTVKPPEDQLKSENLEVSSSFNYSV
LQHLGQFPPLMPNKQIAESANSSSPQSSAGGKPAMSYASALRAPPKPRPPPEQAKKSSDP
LSLFQELSLGSSSGSNGFYSYFK |
NT seq |
5832 nt +upstreamnt +downstreamnt
atggaagacagaagagcggaaaagtcatgtgaacaagcatgtgaatcacttaagaggcag
gactatgaaatggccctcaagcactgcacagaggcccttctttctctaggccagtactcc
atggcagacttcacagggccttgtcctttggaaatagaacgcatcaaaatcgagagtctt
ctctacagaattgcctcatttttgcaactgaaaaattatgtgcaagctgatgaagattgt
agacatgtgctgggagaaggactggccaagggagaggatgcctttcgggcagtgctttgc
tgcatgcagctgaaagggaagctccaacctatatccaccattcttgccaagtcactgaca
ggagagtccctgaatgggatggtaacaaaggatttgacaagactaaaaacacttctttca
gaaacagagacagcaactagtaatgccctctctggatatcacgtggaagacttagatgag
ggatcttgtaatggttggcatttccgcccaccacctaggggaatcacaagcagcgaggaa
tatactttgtgtaaaagatttttagagcaaggaatatgtaggtatggtgcccagtgtact
tcagcacattcccaggaagaactagcagaatggcagaaaagatatgcttcacggctgata
aaattgaaacagcaaaatgagaataaacagctctcaggcagttacatggaaaccttgata
gaaaagtggatgaattcattgtctcctgagaaagtgcttagtgaatgtatagaaggagta
aaggtagagcacaatcctgacctgtcagttactgtcagcactaaaaaatcccaccagaca
tggacctttgctctcacctgtaagcctgcaagaatgctgtatcgtgtagcattgctttat
gatgctcatcgtcctcattttagtatcattgcaatatctgccggagatagtactacccag
gtatcacaagaagtcccagaaaactgtcaagaatggataggaggaaagatggcccaaaat
ggattagatcattacgtgtataaagtcgggatagcatttaacacagaaatatttggaact
tttcgccaaaccatagttttcgactttggattggaaccagtactcatgcaaagagtaatg
attgatgcagcttctacagaagatctcgaatacctgatgcatgcaaaacagcagctagta
accacagctaaacgttgggattcttcctctaagactattatagattttgaacctaatgaa
actactgatttggagaagagccttcttatcagataccaaattcccctctctgctgaccag
ctatttacccagtccgttttagacaaatcattgaccaagagcaactatcagtcacggtta
catgaccttctttatattgaggagatagcccagtataaagaaatcagcaagttcaacctt
aaagtgcaattgcagattctagcaagcttcatgctcactggcgtttctggaggtgcaaag
tatgctcagaatggacaactttttggtcgctttaagcttactgaaacactttctgaagat
actttggctggacgactggtgatgaccaaagtcaatgctgtttatttattaccagtccct
aaacagaagttaggacagacccagggaaccaaagagaaggtttatgaagctactattgaa
gaaaaaacaaaggaatatatatttttaaggctatctagggaatgctgtgaagaacttaat
cttcggcctgactgtgacacacaggttgaacttcagtttcagttaaatcgattacccctc
tgtgaaatgcactatgcactagacaggatcaaggacaatggggttttgtttccagacatc
agtatgactcccaccataccgtggagtcctaacagacaatgggatgaacagttggatcct
cgactaaatgcaaaacagaaagaggctgttctggccattaccactccacttgcaatccag
ctgccgcctgtgcttatcatcggaccctatgggacaggcaaaacgttcactctagctcag
gctgtcaaacatattctgcagcaacaggagactagcaggattctcatttgcacccattct
aatagtgctgctgatctctacataaaggattatttacatccatatgtagaagcaggcaat
ccccaggcaagacctctcagggtatatttcagaaatcgctgggtaaagactgtccaccca
gttgtgcatcagtactgtttgatctcaagtgcacattccacctttcagatgccccagaaa
gaagatattcttaaacatcgagtggtggttgttacattgaatacttcccagtacctctgt
cagttggaccttgaacctgggttttttacacacattctattagatgaagctgcccaggcc
atggagtgtgaaaccattatgcctctagcattagcaactcaaaacactcggattgtcttg
gctggtgatcacatgcagctcagtccttttgtttacagcgagtttgccagggagagaaac
cttcacgtttcattacttgaccgactctatgagcattaccctgctgagttcccatgtagg
attctcctgtgtgagaactaccgctcccatgaagctatcatcaattacacctctgagctt
ttctatgagggcaaactgatggccagtgggaagcagccagcacacaaagatttctaccca
ctaactttctttacagcacgaggagaagatgtacaagaaaaaaatagcacagctttttat
aataatgcagaggtgtttgaagtggtggaacgtgtagaagagttaagaaggaagtggcca
gtagcgtgggggaagttagatgatggcagtattggtgtggtgactccatatgctgatcaa
gtgtttagaatacgtgctgaacttcgaaaaaagagattatctgatgttaatgtagaaagg
gtgctaaacgttcaaggaaagcaattcagagttttgtttcttagcacagtacgtacaaga
catacttgtaaacataaacagacaccaattaaaaagaaagagcaacttctggaagattcc
acagaggacttagattatggttttttatctaactacaagcttctcaatactgccatcaca
agagcacaatccctggttgctgtggtgggtgatcccattgctctgtgctctattggaaga
tgcaggaaattttgggaacggtttattgccctgtgtcatgaaaacaatagcctacatgga
atcactttcgaacagatcaaggcccagttagaggctttagagctaaagaagacatacgtg
ttgaatccgctggcacctgaatttatcccccgggctctaagactgcagcattcaggaagt
accaacaaacagcagcaatcaccacctaaggggaaaagtcttcatcatacccagaatgat
cacttccagaatgatggaattgttcagcccaatccttccgtactcattggcaatcctatt
agagcatatactcctccaccccctcttggacctcacccaaatttgggaaaatctccaagc
cctgttcaaagaatagatcctcacactgggacaagtattctttatgtacctgctgtctat
ggagggaatgtagttatgtcggtgcctttacctgtaccatggacaggataccagggtagg
tttgcagttgatcctcgaatcattacacatcaggcagcaatggcctataacatgaacctg
ttacagacacatggacgaggatctcctattccttatggccttggacatcacccacctgtc
agcataggccagccacaaaatcagcatcaggagaaggatcaacatgagcaaaatcgaaat
ggtaaaagtgatacaaataattccggacctgaaattactaagattcgaacaccagagaaa
aagccaacagaaccaaaacaggttgatttggaatcaaatccacagaacagaagtcctgaa
tcacgtcctagtgttgtttatcccagtaccaaatttcctcgcaaagataatctcaaccca
agacacataaatcttccccttcctgctccccacgcacagtatgcaatccctaatcgtcat
tttcatcctcttcctcagctaccaagaccaccctttccaattccacagcagcacaccttg
ttaaatcagcagcagaataatttgcctgaacaagcaaatcagatgccacctcagccaaat
caggtagtccagcagcaaagtcagttgaatcagcagcctcagcagccacctcctcagctt
tctcctgcatatcaggcaggacccaacaatgctttttttaataatgcagttgctcatcgg
ccacagtctcctcctgcagaggctgtgatttcggagcagcagccccctcccatgctgcaa
gaaggccacagtcctctgagagccattacacaacccggccccattcttccttcgcatctg
aatagcttcattgatgagaaccccccaggattacctataggggaggctttagatcgtata
catgggagtgtcgctctggaaacattaagacagcagcaggcacggttccagcaatggagt
gagcatcatgcctttctcagtcagggcagcgttccatacccacaccatcaccatcctcac
ctccagcatcttcctcagccgcccctgggattacatcagccgccagtgcgggcagactgg
aagctcaccagcagtgccgaagatgaagtggagaccacatactcaaggtttcaagactta
atcagagaactgtctcatcgtgatcaaagtgaaacacgggaactagctgaaatgccacca
cctcaatcaagacttttgcaatatagacaagtacagactagaagcccaccagcagtccca
tctcccccatccagtacagaccacagtagccacttttctaactttaatgataacagcaga
gacattgaagtagccagcaacccagcatttccgcagcgcctcccaccccagatattcagc
tcacctttctcattgccatctgaacaccttgcccctcctcccttgaaatacctggcacct
gatggagcatggacttttgctaacttgcaacagaatcacctaatggggccaggttttccc
tatggcctacctccattgcctcacaggccaccgcagaacccttttgtacaaatacagaat
catcaacatgctattggtcaagagccatttcacccattgtcatctcgaacagtatcttct
tcttcgctccctagcttagaagagtatgagcccagaggacctggtcggcccttgtaccaa
agaagaatctcatctagctcagttcaaccttgttctgaagaagtaagcactcctcaagac
agtctggctcagtgtaaagagcttcaggaccacagtaatcaatcttctttcaacttttca
tccccggagtcctgggtaaacaccacctcatctactccttatcagaacattccgtgcaat
ggatccagcaggacagctcagcccagagagttgatagcgccacccaagactgtcaaaccc
cctgaggatcaactgaagtcggagaacctcgaggtgtccagttccttcaactacagtgtg
ctgcagcatctcggccagtttccaccccttatgcccaacaagcagatcgcggagtcagcc
aatagcagtagcccccagagctctgcagggggcaagcctgccatgtcctatgccagtgct
ctgcgggcccctccaaagcccaggccccctcctgagcaggccaagaagagtagcgaccct
ctgtctctcttccaggaactgagcctgggaagctcatctggcagcaatggcttttactca
tattttaaataa |