Chlorocebus sabaeus (green monkey): 103245484
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Entry
103245484 CDS
T04361
Symbol
PABPC1L
Name
(RefSeq) poly(A) binding protein cytoplasmic 1 like
KO
K13126
polyadenylate-binding protein
Organism
csab
Chlorocebus sabaeus (green monkey)
Pathway
csab03015
mRNA surveillance pathway
csab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103245484 (PABPC1L)
09123 Folding, sorting and degradation
03018 RNA degradation
103245484 (PABPC1L)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csab03019
]
103245484 (PABPC1L)
03041 Spliceosome [BR:
csab03041
]
103245484 (PABPC1L)
Messenger RNA biogenesis [BR:
csab03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103245484 (PABPC1L)
mRNA cycle factors
Stress granule specific factors
103245484 (PABPC1L)
Spliceosome [BR:
csab03041
]
Complex C
Other components
Complex C specific factors
103245484 (PABPC1L)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_7
RRM_5
RRM_Nup35
RRM_MARF1
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
103245484
NCBI-ProteinID:
XP_008014473
Ensembl:
ENSCSAG00000014242
LinkDB
All DBs
Position
2:complement(18872217..18904492)
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AA seq
619 aa
AA seq
DB search
MNASGSGYPLASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQ
QPADAERALDTMNFEMLKGQPIRIMWSQRDPGLRKSGVGNIFIKNLEDSIDNKALYDTFS
TFGNILSCKVECDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERE
AELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEK
HEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKN
LDDSIDDDKLRKEFSPYGVITSAKVMTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGT
KPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQPSSYFLPAVPQPPAQAAY
YGCGPVTPTQPAPRWTSQPPRPSSAYPPGASMVRPPVMPRRPPAHISSVRQASTQVPRMV
PHTQRVANIGTQTTGPGGLGCCTPGRPLLPYRCSSAAHSTYRVQEPAVHVPGQEPLTASM
LAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDE
AVAVLQAHQAMEQPKAYMH
NT seq
1860 nt
NT seq
+upstream
nt +downstream
nt
atgaacgccagcggctccggctacccgctcgcctcgctctacgtgggcgatctgcacccc
gacgtgacggaggccatgctctatgagaagttctctcccgccggccccatcctgtcaatc
cgcgtgtgccgcgatgtggccacccggcgctcgctgggctacgcctacatcaacttccag
cagcccgcggacgcggagcgggcactggacacaatgaactttgaaatgctcaaaggccag
cctattcgcatcatgtggtcccagcgagacccaggacttcgcaagtcaggtgtgggcaac
atcttcatcaagaacctggaggactccattgacaacaaagctttatatgataccttctcc
acctttgggaacatcctctcctgcaaggtggagtgtgacgagcatggctcccggggtttt
ggctttgtccactttgagacccacgaggccgcgcagcaggccatcaacaccatgaacggg
atgctgctgaatgaccgcaaagtctttgtgggccacttcaagtctcgacgggagcgggag
gcggagctgggggcgcgggccctggagttcaccaatatctacgtgaagaacctcccggtg
gatgtggacgagcaaggcctgcaggacctcttctcccagtttgggaagatgttgagtgtg
aaggtgatgagggacaacagcggtcactcgcggtgctttggctttgtcaactttgagaag
catgaggaagcccagaaggctgtggtgcatatgaatgggaaggaggtgagcgggcggctg
ctgtatgcgggccgggcccaaaagcgcgtggagcggcagaatgaactgaagcgcaggttt
gagcagatgaagcaggaccggctgaggcgttaccagggtgtgaacttgtacgtgaagaac
ctggacgactctattgatgatgacaaactgaggaaagagttctctccctatggagtaatt
accagtgcgaaggtgatgacagagggtggccacagcaaggggtttggctttgtgtgtttt
tcctccccagaagaggcgacaaaggccgtgacagagatgaacgggcgcatcgtgggcacc
aagccactctacgtggcactggcccagcgcaaagaggagcggaaggccatcttgaccaac
cagtacatgcaacgcctctccaccatgcggaccctgagtaaccccctcctgggctccttt
cagcagccctccagctacttcctgcctgccgtgccccagcctccagcccaggctgcatac
tatggctgtggcccagtgacacccacccagcctgctcccaggtggacgtcccagccacct
agaccttcctctgcctaccctccaggtgcctcaatggtccggccaccagtcatgcctcgt
cgccccccagcccacatcagcagtgtgaggcaggcctccacccaggtgccacgcatggtg
cctcatacccagagagtagccaacattggtactcagaccacaggacccggtgggttagga
tgctgtacaccaggccggcctctcctgccgtacagatgttcctcagcagcacatagcacc
tatcgggtccaggagccggctgtgcacgtcccgggacaggagcccctgaccgcgtccatg
ctggctgcggcacccctgcatgagcaaaaacagatgattggggagcgtctctaccccctt
atccatgatgtccacacccagctggccggcaagatcacgggcatgctgctggagattgac
aactcggagctgttgctcatgctggagtctccagagtccctccatgccaagatagatgag
gcagtggccgtgctgcaggcacaccaggctatggagcagccgaaggcgtacatgcactga
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