Chlorocebus sabaeus (green monkey): 103246093
Help
Entry
103246093 CDS
T04361
Symbol
SPG11
Name
(RefSeq) spastic paraplegia 11 (autosomal recessive)
KO
K19026
spatacsin
Organism
csab
Chlorocebus sabaeus (green monkey)
Pathway
csab04142
Lysosome
csab05014
Amyotrophic lateral sclerosis
csab05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
103246093 (SPG11)
09160 Human Diseases
09164 Neurodegenerative disease
05014 Amyotrophic lateral sclerosis
103246093 (SPG11)
05022 Pathways of neurodegeneration - multiple diseases
103246093 (SPG11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csab03400
]
103246093 (SPG11)
DNA repair and recombination proteins [BR:
csab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
103246093 (SPG11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spatacsin_C
Motif
Other DBs
NCBI-GeneID:
103246093
NCBI-ProteinID:
XP_008015604
LinkDB
All DBs
Position
26:38386000..38482236
Genome browser
AA seq
2174 aa
AA seq
DB search
MEPTGDSREVSAGVTRPSVSRSVHRACPRRNQVPAKVPGSNGPAKMAAEEGAASAASAGG
SWGAAAMGRVLPMLLVPVPAEAMGQLGSRAQLHTQQEALGSLTAAGSLQVLSLAPGSRGR
GRCCLEGPFWHFIWEDSRNSSTPTDKPKLLALGENYELLIYEFNLKDGRCDATILYSCSG
EALQKLIEDQDISISLLSLRILSFHNNTSLLFINKCIILHIIFPERDAAIRVLNCFTLPL
PAQAVDMIIDAQLCRGILFVLSSLGWIYIFDVVAGTYVAHVDLALHEEDMCNEQQQEPAK
ISSFTSLKVSQDLDVVVIVSSSNSAIALNLNLYFRQHPGHLLCERTLEDLPIQGPKGIDE
DDPVNSAYNMKLTKFSFQIDRSWKAQLSSLNETIKNSKLEVSCCAPWFQDILHSESPESG
NHSTSVQSWAFIPQDIIHGQYNFLRKDHAKTSDPGRSWKIMHIGEQEEPIDLKCVSVTGF
TALFTWEVERMGYTITLWDLENQGMQCFSLGRKCIPVDGSEEQQLCFVLTEKGLSLILFG
LTQEEFLNRLMIHGSASTVDILCHLNGWGRCSIPLHALEAGIENRQLDTVNFFLKSKENL
FNPSSKSSVSDQFDHFSSHLYLRNVEELMPALDLLCSAIRESYSEPQSKHFSEQLLNLTL
SFLNNQIKELFIHTEELDEQLQKGVNILTSYINELRTFMIKFPWKLTDAIDEYEVHENVP
KVKESNIWKKLSFEEVIANAILNNRIPEAQTFFRINSHSAQKLEELIGIGLNLVFDNLKK
NNIKEASELLKNMGFDVKGQLLKICFYTTDKNIRDFLVEILKEKNYFSEKEKRTIDFVHQ
VEKLYLGHFQENMQIQPFPRYWIKEQDFFKHKSLLDSFLKYDCKDEFNKQDHRIVLNWAL
WWDQLTQESIILPRISPEEYKSYSPEALWRYLTARHDWLNIILWIGEFQTQHGYTSFQQN
KWPLLTIDVINQNTSCNNYMRNEILDKLARNGIFLASELEDFECFLLRLSRIGGVIQDAL
PVQNYKTKEGWDFHSQFILYCLEHSLQHLLYVYLDCYKLSPENCPFLEKKELHEAHPWFE
FLVQCRQVASNLTDPKLIFQASLANAQILIPTNQASVSSMLLEGHTLLALATTMYSPGGV
SQVVQNEENENCLKKVDPQLLKMALTPYPKLKTALFPQCTPPSVLPSDITLYHLIQVQYL
GGQYLGLIDLNIQPGKQKSCADVILIPFFFRIQQVGNEAYVIGLSSFHIPSVGAACVCFL
ELLGLDSLKLRVDMKVANIILRYKCRNEDAQYSFIRESVAEKLSKLADGEKATTEELLVL
LEEGTWNSIQQQEIKRLSSESSSQWALVVQFCRLHDMKLSISYLRECAKANDWLQFIIHS
QLHNYHPAEVKSLIQYFSPVIEDHLRLAFENLPLVPTSKMDINQVCNKSSQELQGSKEVM
TNLFEILLQCSEEPDSWHWLLVEAVKQQAPILSVLASCLQGASAISCLCVWIITSVEDSV
ATEAMGRIQDLIEDHTWNLEDLSVIWRTLLTRQKSKTLIRGFQLFFKDSPLLLVMEMYEL
CMFFKNYKEAEAKLLEFQESLEILNTAATKVHPVIPAMWLEDQVCFLLKLMLQQCKTPYE
LEKLLQLFVEREHLFSDGPDVKKLYVLCQILKDTSIAINHIIITCYSIENFQHECKSIVE
RLQTDGQFALARRVAELAELPVDNLVIKEIRQEMQTLKHIEQWSLKQARIDFWKKCHENF
KKYSISSKAASSFFSTQAHVACEHPAGWSSIEERHLLLTLAGHWLAQEDVVPLDKLEELE
KQIWLCRITQHTLGRNQEETEPKFSRQISTSGELSFDSLAREFSFSKLAALNTSKYLELN
SLPSKETCENRLDWKEQESLNFLIGRLLDDDCVHEASRVCRYFHFYNRDVALVLHCRALA
SGEASMEDLHPEIHALLQSAELLEEEPDIPLRRVHSTSSLDSQKFVTVPSSDEVVTNLEV
LTSKCLHGKNYCRQVLCLYDLAKELGCSYTDVAAQDGEAMLREILASQQPDRCKRAQAFI
STQGLKPDTVAELVAEEVTRELLTSSQGTGHKQMFNPTEESQTFLQLTTLCQDHTLVGMK
LLDKISSVPHGELSCTTELLILAHHCFTLTCHMEGIIRVLQAARMLTDNHLAPSEEYGLV
VSNPLNPSPSCGNL
NT seq
6525 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgaccggagacagccgagaggtctccgcgggagtcacgaggccgagcgtgagc
cgctccgtacaccgcgcatgcccacgacgcaatcaggttccggcgaaagtgcccggaagt
aacggcccggccaagatggctgcagaggagggggccgccagtgctgcttccgccggcggt
agctggggcgccgcggctatggggcgggttctaccgatgctgttggtgccggtccccgcc
gaggcgatggggcagctgggctcccgggcgcagctgcacacacagcaggaggctctgggg
agcctgacggctgcgggcagcctccaggtgctttctttggcgcctggcagccggggccgg
ggtcgctgctgcctggagggccccttctggcactttatatgggaggattctcgtaacagc
agcacaccaactgacaagcccaaactgctcgctcttggtgaaaattatgaactgcttatc
tatgaatttaatttgaaagatggaagatgtgatgcaacaattttgtatagctgtagtggg
gaggcattgcaaaagctcattgaagatcaagatatcagtatttccttactgtctttgaga
atcctgtcatttcacaataacacatcattgttgttcatcaacaaatgtatcatcctacat
attatatttcctgaaagagatgctgcaattagagtactcaactgtttcacactacccttg
cctgcacaggcagtggacatgattattgacgcgcagctctgcagaggaattctttttgtt
ttgagtagtttaggctggatctacatttttgatgttgtggctggtacgtatgtagctcat
gtggatttagcacttcacgaagaagatatgtgtaatgagcagcaacaggagccagccaag
atttcttcatttacttcactgaaagtgtctcaagacctcgatgttgtagtgattgtcagt
tcatccaactctgcaattgctcttaacttaaatttgtatttcaggcaacacccaggacac
ctactgtgtgaaagaacactagaagatcttcctattcaaggacctaaggggatagatgaa
gatgatcctgttaactctgcgtacaacatgaaactgaccaagttttctttccaaattgat
aggtcttggaaagcccagctatcatcattgaatgaaacaataaagaactccaaactggaa
gtttcctgttgtgctccgtggttccaggatattttgcattcagagtcacctgaatctggt
aaccacagtacaagtgtgcagagctgggctttcattccacaggacataatacacgggcaa
tataattttctacggaaagatcatgccaagaccagtgatccaggaagatcatggaagata
atgcacataggtgaacaagaggaacccatagatcttaaatgtgtgtctgtgacaggattc
actgcactgtttacttgggaagtggaaaggatgggctataccattaccctctgggatttg
gagaaccagggcatgcagtgtttttcccttggcagaaagtgtattcctgtagacggtagt
gaagagcagcaactgtgctttgttttgacagagaaaggactctctctgattttgtttggt
ttgacacaagaagagtttttaaacagactcatgatccatggaagtgccagcactgtggac
attctttgtcatctcaatggatgggggaggtgctccattcccttacatgcactagaggcc
gggatagaaaatcgtcagctggacacagtaaatttctttttgaagagcaaagaaaatctt
tttaatccatcctcaaaatcttctgtatctgatcagtttgatcacttttcatcccattta
tatttaagaaatgtggaagagctgatgccagcattggatttactttgctcagcaattaga
gaaagttattctgaaccccaaagcaaacacttttcagaacaattgcttaatcttacactg
tctttccttaacaaccaaataaaggagctttttattcacactgaagaactagatgaacaa
ctgcaaaaaggagtgaacattttgactagctacattaatgaacttcgaaccttcatgata
aagtttccttggaagctaacagatgctatagatgaatatgaagtacatgaaaatgtcccc
aaagtaaaggagagcaatatatggaagaaactcagctttgaggaagttattgccaatgcc
attttaaacaacagaataccagaggcacagactttcttcaggattaatagtcattctgct
cagaaacttgaggagctgattggcataggcctaaatttggtctttgacaatttaaaaaag
aacaatataaaggaagcctctgaacttttgaagaatatggggtttgatgtaaaaggccaa
ttgctcaagatatgcttctacacaactgataaaaatatacgtgactttttggttgaaatt
ttaaaagaaaaaaattatttttctgaaaaagagaaaagaactatagacttcgtgcatcaa
gttgagaagctttatttgggacatttccaagaaaatatgcaaatccagccatttcccagg
tattggataaaggaacaagattttttcaagcacaaatcccttttggactcattcctgaaa
tatgattgtaaagatgaatttaacaaacaggaccatagaattgtgttaaattgggctctg
tggtgggatcaactaacacaggaatccatcattctccccaggataagtccagaagaatac
aaatcatattcccctgaagccctctggagatacctcacagctcgccatgattggttaaac
attatcttatggattggagaatttcaaacccagcatggttatacttcatttcagcagaac
aaatggccccttctgactattgatgttattaaccagaatacttcctgtaacaactacatg
aggaatgaaattttagataagctggccaggaatgggatttttctggcatctgaactggaa
gactttgaatgcttcctcctaagactgagccgtattggaggtgtaatacaggatgccctc
cctgttcaaaactacaagaccaaagaaggttgggatttccattctcaattcattctctat
tgtttggagcacagtctgcagcatcttctttatgtctaccttgactgttacaaacttagt
cctgaaaattgtccctttttggaaaaaaaagagttacatgaagcacacccttggtttgaa
tttttagttcagtgtcgacaagttgccagtaatttaacagatcccaaactgatcttccag
gctagcctcgcaaatgctcagattttgattcccaccaatcaggccagtgtaagcagtatg
ctattggaaggacataccctcctggcccttgctactacaatgtattctcctgggggtgtc
agccaggttgttcagaatgaagaaaatgaaaactgtttgaagaaagtggatccccagctt
ttgaagatggcattaactccttaccccaagctaaaaactgctctcttcccacagtgcact
cctcctagtgtcctgccatctgatattacactctaccaccttattcaggtacagtattta
ggtggtcaatatttaggtctgatagacctaaatattcagccaggaaaacagaaatcatgt
gctgatgtgattttgattcctttctttttcaggatccagcaagtaggcaatgaagcctat
gttatagggctctcctccttccacataccttcagtaggagctgcatgtgtttgtttctta
gaattgcttggccttgacagcctcaaactcagagttgatatgaaagtggccaatataatt
ttgagatacaagtgcagaaatgaagatgctcagtacagctttatcagagagtctgtagcc
gaaaaactatctaaactagctgatggtgaaaaggcaaccacagaagaattgcttgttctc
ttagaagaaggcacatggaacagcattcagcaacaggaaataaagaggttatccagtgaa
tctagcagccagtgggcattagtggtacagttctgcaggctacatgatatgaaactaagc
atatcttaccttagagaatgtgccaaagcaaatgattggctgcagttcattattcacagc
caactccacaactaccacccagcagaggtgaaatcccttatccagtacttcagcccagtc
attgaggaccacttaaggctggcttttgagaacttgcccttagtgcccacctccaaaatg
gacatcaatcaagtctgcaataagtcctcccaggaacttcagggaagcaaagaagtgatg
accaatttatttgaaattctactccaatgctcagaggagccagactcctggcactggctt
ctggttgaagcagtgaaacaacaggcccctatcctcagtgttctggcctcatgtctccag
ggtgccagtgccatttcttgtctctgtgtttggatcatcacttctgtggaggacagtgtt
gcaactgaagccatgggacgcattcaggacttgatagaggaccatacctggaaccttgag
gatctttcagtcatctggagaacattattaacaagacagaagagcaaaactctcatcaga
ggtttccagcttttctttaaggattccccattactattggtgatggagatgtatgaactg
tgtatgttcttcaagaattataaagaagctgaagctaaacttctggagtttcaggagagc
cttgaaatacttaacacagcagccacaaaggtccaccctgtcatccctgctatgtggctg
gaggatcaggtgtgtttccttttgaagcttatgctacagcaatgtaagaccccatatgag
ctggagaagcttttacagctctttgttgaaagagagcatctcttctctgatggtccagat
gtgaaaaagctgtatgtcctttgccaaattttgaaggatacatccatagccattaatcat
ataattattacctgctacagcattgagaattttcagcatgaatgtaaatctattgtggaa
agactgcagacagacggacagttcgctttggccaggagggtagcagaattagctgagtta
cctgtggacaacttggttattaaagagataagacaggaaatgcagactctaaaacacatt
gaacagtggtcactaaaacaagcaagaattgacttctggaaaaaatgccatgagaatttt
aagaaatattcaatttcaagcaaagcagcttcttcctttttctcaactcaggcccatgtg
gcatgtgagcacccagctggatggagcagcattgaggaacgccatctgctgctcaccttg
gcagggcactggcttgcccaggaggacgtggtgcccttggacaagctggaggagctggag
aagcagatctggctctgccgcatcacccagcacactcttggaagaaatcaggaggaaaca
gagcccaaattttctcgacagatctcaactagtggtgaactttcctttgatagtttagcc
agggagttttccttctccaagttggctgctctgaacacatcaaaatacttagaacttaac
agccttccatccaaagagacatgcgagaatagactggattggaaagagcaggagtcacta
aactttttgattgggcgcctactggatgatgactgtgtgcatgaagcaagtagagtatgc
cggtattttcatttctataatcgagatgtcgccttggtattgcactgcagagcactggcc
tcaggagaagctagtatggaggatctgcacccggagatccatgctctcctacaaagtgct
gagctgcttgaggaagaacccgacattcccctaaggagagtccacagcacttcaagtctg
gatagtcagaagtttgtgacagtgccctccagtgatgaagtggtgactaacctggaagtg
ctgacaagtaaatgcctccatggaaagaactactgtcgacaggtcctctgtctgtatgat
cttgccaaggagttgggctgttcctacacagatgttgctgctcaggatggtgaagccatg
ctccgggaaatcttggcctctcagcagcctgaccgatgcaaacgagcccaggccttcatc
agcacacagggccttaagccagatactgtggctgaactcgtggcagaagaggtgacacgg
gagctgcttacttcatcacagggaacaggacataagcagatgttcaacccaacagaggaa
agccagacatttcttcagctgaccactctgtgtcaagaccacacattggtaggcatgaag
ttgttggataagatttcctccgttccccatggggaattgtcttgcaccacagagctcctg
atcctggcccatcattgcttcaccctgacgtgccacatggagggcatcatccgagtcctg
caggctgcccggatgctcacagataaccacctggcccccagtgaggagtatgggctggtg
gtaagtaaccccctcaacccgtctccatcctgtggaaacctttga
DBGET
integrated database retrieval system
