Chlorocebus sabaeus (green monkey): 103246449
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Entry
103246449 CDS
T04361
Symbol
HTT
Name
(RefSeq) huntingtin
KO
K04533
huntingtin
Organism
csab
Chlorocebus sabaeus (green monkey)
Pathway
csab05016
Huntington disease
csab05022
Pathways of neurodegeneration - multiple diseases
Brite
KEGG Orthology (KO) [BR:
csab00001
]
09160 Human Diseases
09164 Neurodegenerative disease
05016 Huntington disease
103246449 (HTT)
05022 Pathways of neurodegeneration - multiple diseases
103246449 (HTT)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csab03019
]
103246449 (HTT)
04131 Membrane trafficking [BR:
csab04131
]
103246449 (HTT)
03029 Mitochondrial biogenesis [BR:
csab03029
]
103246449 (HTT)
Messenger RNA biogenesis [BR:
csab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103246449 (HTT)
Membrane trafficking [BR:
csab04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
103246449 (HTT)
Mitochondrial biogenesis [BR:
csab03029
]
Mitochondrial quality control factors
Regulator of mitochondrial biogenesis
Other regulator of mitochondrial biogenesis
103246449 (HTT)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Htt_C-HEAT
Htt_N-HEAT
Htt_bridge
Htt_N-HEAT_1
HEAT
HEAT_2
HEAT_EF3_N
Rad26-like_helical_rpts
Motif
Other DBs
NCBI-GeneID:
103246449
NCBI-ProteinID:
XP_008016253
Ensembl:
ENSCSAG00000015865
UniProt:
A0A0D9RTK1
LinkDB
All DBs
Position
27:complement(45493467..45657690)
Genome browser
AA seq
3133 aa
AA seq
DB search
MATLEKLMKAFESLKSFQQQQQQQQQQPPPPPPPPPPPPPPQLPQPPQAQPMLPQPQPPP
PPPPPPPGPAVAEEPLHRPKKELSATKKDRVNHCLTICENIVAQSVRNSPEFQKLLGIAM
ELFLLCSDDAESDVRMVADECLNKVIKALMDSNLPRLQLELYKEIKKNGAPRSLRAALWR
FAELAHLVRPQKCRPYLVNLLPCLSRTSKRPEESVQETLAAAVPKIMASFGNFANDNEIK
VLLKAFIANLKSSSPTIRRTAAGSAVSICQHSRRTQYFYSWLLNVLLGLLVPVEEEHSTL
LILGVLLTLRYLVPLLQQQVKDTSLKGSFGVTRKEMEVSPSAEQLVQVYELTLHHTQHQD
HNVVTGALELLQQLFRTPPPELLQALTTVGGIGQLTAAKEESGGRSRSGSIVELIAGGGS
SCSPVLSRKQKGKVLVGEEEALEDDSESRSDVSSSAFAASVKDDISGELATSSGVSTPGS
AGHDIITEQPRSQHTLQADSVDLASCDLTSSATDGDEEDILSHSSSQVSAVPSDPAMDLN
DGTQASSPISDSSQTTTEGPDSAVTPSDSSEIVLDGTDNQYLGLQIGQPQDEDEEATGVL
PDEASEAFRNSSMALQQAHLLKNMSHSRQPSDSSVDKFVLRDEATEPGDQENKPCRIKGD
IGQSTDDDSAPLVHCVRLLSASFLLTGGKNVLVPDRDVRVSVKALALSCVGAAVALHPES
FFSKLYKVPLDTTEYPEEQYVSDILNYIDHGDPQVRGATAILCGTLICSILSRSRFHVGD
WMGAIRTLTGNTFSLADCIPLLRKTLKDESSVTCKLACTAVRHCVMSLCSSSYSELGLQL
IIDVLTLRNSSYWLVRTELLETLAEIDFRLVSFLEAKAENLHRGAHHYTGLLKLQERVLN
NVVIHLLGDEDPRVRHVAAASLIRLVPKLFYKCDQGQADPVVAVARDQSSVYLKLLMHET
QPPSHFSVSTITRIYRGYNLLPSITDVTMENNLSRVIAAVSHELITSTTRALTFGCCEAL
CLLSTAFPVCIWSLGWHCGVPPLSASDESRKSCTVGMATMILTLLSSAWFPLDLSAHQDA
LILAGNLLAASAPKSLRSSWASEEEANPAATKQEEVWPALGDRALVPMVEQLFSHLLKVI
NICAHVLDDVAPGPAIKAALPSLTNPPSLSPIRRKGKEKEPGEQASVPLSPKKGSEASAA
SRQSDTSGPVTTSKSSSLGSFYHLPSYLKLHDVLKATHANYKVTLDLQNSTEKFGGFLRS
ALDVLSQILELATLQDIGKCVEEILGYLKSCFSREPMMATVCVQQLLKTLFGTNLASQFD
GLSSNPSKSQGRAQRLGSSSVRPGLYHYCFMAPYTHFTQALADASLRNMVQAEQEHDTSG
WFDVLQKVSTQLKTNLTSVTKNRADKNAIHNHIRLFEPLVIKALKQYTTTTSVQLQKQVL
DLLAQLVQLRVNYCLLDSDQVFIGFVLKQFEYIEVGQFRESEAIIPNIFFFLVLLSYERY
HSKQIIGIPKIIQLCDGIMASGRKAVTHAIPALQPIVHDLFVLRGTNKADAGKELETQKE
VVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWKRLSRQIADIILPMLAKQQMHIDSHE
ALGVLNTLFEILAPSSLRPVDMLLRSMFVTPNTMASVSTVQLWISGILAILRVLISQSTE
DIVLSRIQELSFSPYLISCPVINRLRDGDSNSALEEHSEGKQIKNLPEETFSRFLLQLVG
ILLEDIVTKQLKVEMSEQQHTFYCQELGTLLMCLIHIFKSGMFRRITAAATRLFRSDGCG
GSFYTLDSLNLRARSMITTHPALVLLWCQILLLVNHTDYRWWAEVQQTPKRHSLSSTKLL
SPQMSGEEEDSDLAAKLGMCNREIVRRGALILFCDYVCQNLHDSEHLTWLIVNHIQDLIS
LSHEPPVQDFISAVHRNSAASGLFIQAIQSRCENLSTPTTLKKTLQCLEGIHLSQSGAVL
TLYVDRLLCTPFRVLARMVDILACRRVEMLLAANLQSSMAQLPMEELNRIQEYLQSSGLA
QRHQRLYSLLDRFRLSTMQDSLSPSPPVSSHPLDGDGHVSLETVSPDKDWYIHLVKSQCW
TRSDSALLEGAELVNRIPAEDMSAFMMNSEFNLSLLAPCLSLGMSEISGGQKSPLFEAAR
EVTLARVSSTVQQLPAVHHVFQSDLPAEPAAYWSKLNDLFGDAALYQSLTTLARALAQYL
VVVSKLPSHLHLPPEKEKDTMKFVVATLEALSWHLIHEQIPLSLDLQAGLDCCCLALQLP
GLWSVVSSAEFVTHACSLIHCVHFILEAVAVQPGEQLLSPERRTNTPKAIREEEEEVDPN
TQNPKYITAACEMVAEMVESLQSVLALGHKRNSGVPAFLTSVLRNIVVSLARLPLVNSYT
RVPPLVWKLGWSPKPGGDFGTAFPEIPVEFLQEKEVFKEFIYRINTLGWTSRTQFEETWA
TLLGVLVTQPLVMEQEESPPEEDTERTQINVLAVQAITSLVLSAMTVPVAGNPAVSCLEQ
QPRNKPLKALDTRFGRKLSIIRGIVEQEIQAMVSKRENIATHHLYQAWDPVPSLSPATTG
ALISHEKLLLQINPERELGSVSYKLGQVSIHSVWLGNSITPLREEEWDEEEEEEADAPAP
SSPPTSPVNSRKHRAGVDIHSCSQFLLELYSRWILPSNSARRTPAILISEVVRSLLVVSD
LFTERNQFELMYVTLTELRRVHPSEDEILAQYLVPATCKAAAVLGMDKVVAEPVSRLLES
TLRSSHLPSRVGALHGILYVLECDLLDDTAKQLIPVISDYLLSNLKGIAHCVNIHSQQHV
LVMCATAFYLIENYPLDVGPEFSASIIQMCGVMLSGSEESTPSIIYHCALRGLERLLLSE
QLSRLDAESLVKLSVDRVNVHSPHRAMAALGLMLTCMYTGKEKVSPGRTSDPNPAAPDSE
SVIVAMERVSVLFDRIRKGFPCEARVVARILPQFLDDFFPPQDIMNKVIGEFLSNQQPYP
QFMATVVYKVFQTLHSTGQSSMVRDWVMLSLSNFTQRTPVAMATWSLSCFFVSASTSPWV
AAILPHVISRMGKLEQVDVNLFCLVATDFYRHQIEEELDRRAFQSVFEVVAAPGSPYHRL
LTCLRNVHKVTTC
NT seq
9402 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccctggaaaagctgatgaaggccttcgagtctctcaagtccttccagcagcag
cagcagcagcagcagcaacagccgccgccgccgccgccgccgccgccgccgccgccgcct
cctcagcttcctcagccgccacaggcacagccgatgctgcctcagccgcagccgcccccg
ccgccgcccccgccgccacctggcccggctgtggctgaggagccgctgcaccgaccaaag
aaagaactttcagctaccaagaaagaccgtgtgaatcattgtctgacaatatgtgaaaac
atagtggcacagtctgtcagaaattctccagaatttcagaaacttctgggcatcgctatg
gaactttttctgctgtgcagtgatgacgcagagtcggatgtcagaatggtggctgatgaa
tgcctcaacaaagttatcaaagctttgatggattctaatcttccaaggttacagctcgag
ctctataaagaaattaaaaagaatggtgcccctcggagtttgcgtgctgccctgtggagg
tttgctgagctggctcacctggttcggcctcagaaatgcaggccttacctggtgaacctt
ctaccgtgcctaagtcgaacaagcaagagacccgaggaatcagtccaggagaccttggct
gcagctgttcccaaaattatggcttctttcggcaattttgcaaatgacaatgaaattaag
gttttgttaaaggccttcatagcgaacctgaagtcaagctcccccaccattcggcggaca
gctgctggatcagcagtgagcatctgccagcactcaagaaggacacagtatttctatagc
tggctactaaatgtgctcttaggcttactggtacctgtcgaggaggaacactccaccctg
ctgattcttggcgtgctgctcaccctgaggtatttggtgcctttgctgcagcagcaggtc
aaggatacaagcctgaaaggcagcttcggagtgacacggaaagaaatggaggtctctcct
tctgcagagcagcttgtccaggtttatgaactgacgttacatcatacacagcaccaagac
cacaatgttgtgaccggagccctggagctgttgcagcagctcttcagaacgcctcccccc
gagcttctgcaagccctgaccacagtggggggcattgggcagctcaccgccgctaaggag
gagtctggtggccgaagccgtagtgggagtattgtggaacttatagctggagggggttcc
tcatgcagccctgtcctttcaagaaaacaaaaaggcaaagtgctcgtaggagaagaagaa
gccttggaggatgactctgaatcgagatcggatgtcagcagctctgcctttgcagcctca
gtgaaggatgatatcagtggagagctggctacttcttcaggggtttccactccagggtca
gcaggtcacgacatcatcacagagcagccacggtcacagcacacgctgcaggcagactca
gtggatctggccagctgtgacttgacaagctctgccactgatggggatgaggaggatatc
ttgagccacagctccagccaggtcagcgccgtcccatctgaccctgccatggacctgaat
gatgggacccaggcctcctcgcccatcagcgacagctcccagaccaccactgaagggcct
gattcagctgtcaccccttcagacagttctgaaattgtgttagacggtaccgacaaccag
tatttgggcctgcagattggacagccccaggatgaagatgaggaagccacaggtgttctt
cctgatgaagcctcggaggccttcaggaactcttccatggcccttcaacaagcacattta
ttgaaaaacatgagtcacagcaggcagccttctgacagcagtgttgataaatttgtgttg
agagatgaagctactgaaccgggtgatcaagaaaacaagccttgccgcatcaaaggtgac
atcggacagtccactgatgatgattctgcacctcttgtccattgtgtccgccttttatct
gcttcgtttttgctaacagggggaaaaaatgtgctggttccggacagggatgtgagggtc
agcgtgaaggccctggccctcagctgtgtgggagcagctgtggccctccacccggaatct
ttcttcagcaaactctataaagttcctcttgacaccacggaataccctgaggaacaatat
gtctcagatatcttgaactacatcgatcatggagacccacaggttcgaggagccactgcc
attctctgtgggaccctcatctgctccatcctcagcaggtcccgcttccacgtgggagat
tggatgggcgccattagaaccctgacaggaaatacattttctttggcggattgcattcct
ttgctgcggaaaacactgaaggatgagtcttctgttacttgcaagctggcttgtacagct
gtgaggcattgtgtcatgagtctctgcagcagcagctacagtgagttaggactgcagctg
atcatcgatgtgctgactctgaggaacagttcctattggctggtgaggacagagcttctg
gaaacccttgcagaaatcgacttcaggctggtgagctttttggaggcaaaagcagaaaac
ttacacagaggggctcatcattatacagggcttttaaagctgcaagaacgagtgctcaat
aatgttgtcatccatttgcttggggatgaagaccccagggtgcgacatgttgctgcagca
tcattaattaggcttgtcccaaagctgttttataaatgtgaccaaggacaagctgatcca
gtagtggccgtggcaagagatcaaagcagtgtttacctgaaacttctcatgcatgagacg
cagcctccatctcatttctccgtcagcacaataaccagaatatatagaggctataaccta
ctaccaagcataacagatgtcactatggaaaataacctttcgagagttattgcagcagtt
tctcatgaactgatcacatcaaccacgagagcactcacttttggatgctgtgaagctttg
tgtcttctttccactgccttcccagtttgcatttggagtttaggttggcactgtggagtg
cctccactgagcgcctccgatgagtctaggaagagctgtaccgttgggatggccacaatg
attctgaccctgctctcgtcagcctggttcccattggatctctcagcccatcaagatgct
ttgattttggccggaaacttgcttgcagccagtgctcctaaatctctgagaagttcatgg
gcctctgaagaagaagccaacccagcagccaccaagcaagaggaggtctggccagccctg
ggggaccgggccttggtgcccatggtggagcagctcttctcccacctgctgaaggtgatc
aacatttgtgcacatgtcctggacgacgtggctcctggacctgcaataaaggcagccttg
ccttctctaacaaaccccccttctctaagtcccatccgacgaaaggggaaggagaaagaa
ccaggagaacaagcatctgtaccgttgagtcccaagaaaggcagtgaggccagtgcagct
tctagacaatctgatacctcgggtcctgttacaacaagtaaatcctcatcactggggagt
ttctatcatcttccttcatatctcaaactgcatgatgtcctgaaagctacgcacgctaac
tacaaggtcaccttggatcttcagaacagcacggaaaaatttggagggtttcttcgctca
gccttggacgttctctctcagattctagagctggccacactgcaggacattgggaagtgt
gttgaggagatcctgggatacctgaaatcctgctttagtcgagaaccaatgatggcaact
gtttgtgttcaacaattgttgaagactctctttgggacaaacttggcctcccagtttgac
ggcttatcatccaaccccagcaagtcacaaggccgagcacagcgccttggctcctccagt
gtgaggccaggcttgtaccactactgcttcatggccccgtacacccacttcacccaggcc
ctcgctgacgccagcctgaggaacatggtgcaggcggagcaggagcacgacacctcggga
tggtttgatgtcctccagaaagtgtctacccagttgaagacaaacctcacaagtgtcaca
aagaaccgtgcagataagaatgctattcataatcacattcgtttgtttgaacctcttgtt
ataaaagctttaaaacagtacacgacaacaacatctgtgcagttacagaagcaggtttta
gatttgctggcgcagctggttcagttacgggttaattactgtcttctggattcagatcag
gtgtttattggctttgtattgaaacagttcgaatacattgaagtgggccagttcagggaa
tcagaggcaatcattccaaacatctttttcttcttggtattactatcttatgaacgctat
cattcaaaacagatcattggaattcctaaaatcattcagctctgtgatggcatcatggcc
agtggaaggaaggctgtgacacacgccataccggctctgcagcccatagtccatgatctc
tttgtattaagaggaacaaataaagctgatgcaggaaaagagcttgaaacccaaaaagaa
gtggtggtatcaatgttactgagactcatccagtaccatcaggtgttggagatgttcatt
cttgtcctgcagcagtgccacaaggagaatgaagacaagtggaagcgactgtctcgacag
atagctgacatcatcctcccaatgttagccaaacagcagatgcacattgactctcatgaa
gcccttggagtgttaaatacattatttgagattttggccccttcctcccttcgtccggtg
gacatgcttttacggagtatgttcgtcactccaaacacaatggcatctgtgagcactgtt
caactgtggatatcaggaattctggccattttgagggttctgatttcccagtcaactgaa
gatattgttctttctcgtattcaggagctctctttctctccatatttaatctcctgtcca
gtaattaataggctaagagatggggacagtaattcagcactagaagaacacagtgaaggg
aaacaaataaagaatttgccagaagaaacattttcaaggtttctattacaactggtgggt
attcttttagaagacattgttacaaaacagctgaaggtggaaatgagtgagcagcaacat
actttctattgccaagaactaggcactctgctaatgtgtctgatccacatcttcaagtct
ggaatgttccggagaatcacagcagctgccactagactgttccgcagtgatggctgtggc
ggcagtttctacaccctggacagcttgaatttgcgggctcgttccatgatcaccacccac
ccggccctggtgctgctctggtgtcagatcctgctgcttgtcaaccacaccgactaccgc
tggtgggcagaagtgcagcagaccccaaaaagacacagtctgtccagcacaaagttactt
agtccccagatgtctggagaagaggaggattctgacttggcagccaaacttggaatgtgc
aatagagaaatagtacgaagaggggctctcattctcttctgtgattatgtctgtcagaac
ctccatgactccgagcacttaacgtggctcattgtaaatcacattcaagatctgatcagc
ctttcccacgagcctccagtacaggacttcatcagtgctgttcatcggaactccgctgcc
agcggcctcttcatccaggcaattcagtctcgttgtgaaaacctttcaactccaaccact
ctgaagaaaactcttcagtgcttggaggggatccatctcagccagtcgggagctgtgctc
acgttgtatgtggacaggctgctgtgcacccctttccgtgtgctggctcgcatggtcgac
atccttgcttgtcgccgggtagaaatgcttctggctgcaaatttacagagcagcatggcc
cagttgccaatggaagaactcaacagaatccaggaataccttcagagcagcgggctcgct
cagagacaccagaggctctattccctgctggacaggtttcgtctctccaccatgcaagac
tcacttagtccctctcccccagtctcttcccacccactggacggggatgggcacgtgtca
ctggaaacagtgagtccggacaaagactggtacattcatcttgtcaaatcccagtgttgg
accaggtcagattctgcactgctggaaggtgcagagctggtgaatcggattcctgctgaa
gatatgagtgccttcatgatgaactcggagttcaacctaagcctgctagctccatgctta
agcctagggatgagtgaaatttctggtggccagaagagtccgctttttgaagcagcccgt
gaggtgactctggcccgcgtgagcagcaccgtgcagcagctccctgctgtccatcacgtc
ttccagtccgacctgcctgcagagccggcggcctactggagcaagttgaatgatctattt
ggggatgctgcactgtatcagtccctgaccactctggcccgggccctggcacagtacctg
gtggtggtctccaaactgcccagtcacttgcaccttcctcctgagaaagagaaggacacc
atgaaatttgtggtggcaacccttgaggccctgtcctggcatttgatccatgagcagatt
ccgctgagtctggatctccaggcagggctggactgctgctgcctggccctgcagctgcct
ggcctctggagcgtggtctcctccgcagagtttgtgacccacgcctgctccctcatccac
tgtgtgcacttcatcctggaggccgttgcagtgcagcctggagagcagcttcttagtcca
gaaagaaggacaaataccccaaaagccatcagagaggaggaggaggaggtagatccaaac
acacagaatccgaagtatatcaccgcagcctgtgagatggtggcagaaatggtggagtct
ctgcagtcggtgttggctttgggtcataaaaggaatagtggcgtgccggcgtttctcacg
tcagtgctcaggaacatcgtcgtcagcctggcccgcctgccccttgtcaacagctacaca
cgtgtgcccccactggtgtggaagcttggatggtcacccaaaccgggaggggattttggc
acagcattccctgagatccccgtggagttcctccaggaaaaggaagtctttaaggagttc
atctaccgcatcaacacactaggctggaccagtcgtactcagtttgaagaaacttgggcc
actctccttggtgtcctggtgacgcagcccctcgtgatggagcaggaagagagcccacca
gaagaagacacagagaggacacagatcaacgtcctggccgtgcaggccatcacctcactg
gtgctcagtgcaatgaccgtgcctgtggccggcaacccagctgtgagctgcttggagcag
cagccccggaacaagcctctgaaagctctggacaccaggtttgggaggaagctgagcatt
atcagagggattgtagagcaagagattcaagcaatggtttcaaagagagagaacatcgcc
acccatcatttataccaggcgtgggatcctgtcccttctctgtccccggctactacaggt
gccctcatcagccacgagaagctgctgctgcagatcaaccccgagcgggagctggggagc
gtgagctacaaactcggccaggtgtccatacactcggtgtggctggggaacagcatcaca
cccctaagggaggaggaatgggacgaggaggaggaggaggaggccgacgcccctgcacct
tcatcaccacccacgtctccagtcaactccaggaaacaccgggctggagttgacatccat
tcctgttcgcagtttttactcgagttgtacagccgctggatcctgccatccaactcagcc
aggaggaccccggccatcctcatcagtgaggtggttcgatctcttctggtggtctcagac
ttgttcactgagcgcaaccagtttgagctgatgtatgtgacgctgacagaactgcgaagg
gtgcacccttcagaagacgagatcctcgctcagtacctggtgcctgccacctgcaaggca
gctgccgtccttgggatggacaaggtcgtggcggagcctgtcagccgcctgctggagagc
acgctcaggagcagccacctgcccagcagggtcggagccctgcatggcatcctctatgtg
ctggagtgcgacctgctggacgacactgccaagcagcttatcccagtcatcagcgactat
ctcctctccaacctgaaagggatcgcccactgcgtgaacattcacagccagcagcacgta
ctggtcatgtgtgccactgcgttttacctgattgagaactatcctctggacgtagggcca
gaattttcagcatcaataatacagatgtgtggggtgatgctgtccggaagtgaggagtcc
accccctctatcatttaccactgtgccctcagaggcctggagcgcctcttgctctctgag
cagctctcccgcctggatgcagaatccctggtcaagctgagtgtggacagagtgaacgtg
cacagcccgcaccgggccatggcggctctgggcttgatgctcacctgcatgtacacagga
aaggagaaagtcagtccgggtagaacttcagaccctaatcctgcagccccagacagcgag
tcggtgattgtggctatggagcgggtgtctgttctttttgataggatcaggaaaggcttt
ccttgtgaagccagagtggtggcgaggatcctgccccagtttctagacgacttcttccca
ccccaggacatcatgaacaaagtcatcggagagtttctgtccaaccagcagccatacccc
cagttcatggccaccgtggtgtataaggtgtttcagactctgcacagcaccgggcagtca
tccatggtccgggactgggtcatgctgtccctctccaacttcacacagaggaccccagtc
gccatggccacatggagcctctcctgcttcttcgtcagcgcgtccaccagcccatgggtt
gcggcgatcctcccacatgtcatcagcaggatgggaaagctggagcaggtggacgtcaac
cttttctgcctggttgccacagacttttacagacaccagatagaggaggagctcgaccgc
agggccttccagtctgtgtttgaggtggttgcagctccaggaagcccatatcaccggctg
ctgacctgtttacgaaatgtccacaaggtcaccacctgctga
DBGET
integrated database retrieval system
