Chitinophaga sancti: SIO70_05180
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Entry
SIO70_05180 CDS
T09582
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
csac
Chitinophaga sancti
Pathway
csac03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csac00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
SIO70_05180 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csac03019
]
SIO70_05180 (recQ)
03400 DNA repair and recombination proteins [BR:
csac03400
]
SIO70_05180 (recQ)
Enzymes [BR:
csac01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
SIO70_05180 (recQ)
Messenger RNA biogenesis [BR:
csac03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
SIO70_05180 (recQ)
DNA repair and recombination proteins [BR:
csac03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
SIO70_05180 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Motif
Other DBs
NCBI-ProteinID:
WPQ64255
LinkDB
All DBs
Position
complement(1254297..1256498)
Genome browser
AA seq
733 aa
AA seq
DB search
MAVVKVSLIDALREHFGFDSFKGNQEIIIKSILARKDTFVIMPTGGGKSLCYQLPALMSP
GCALIVSPLIALMKNQVDLVRSYSSKDNVAHFLNSTLSKAQIKKVRTDLLSGKTKMLYVA
PETLTKTENLEFFKELEISFIAVDEAHCISEWGHDFRPEYRRLKEMTDMINPDLPIIALT
ATATPKVQSDIVKNLGLRSPEVYLSSFNRPNLYYEIRPKRKKEQTIREIVKFIHLHKGKS
GIIYTLNRKTTEELADMLTANNIKAVAYHAGLDAGTRAQRQDMFLHEDCEVIVATIAFGM
GIDKPDVRFVIHYNIPKSLENYYQETGRAGRDGLEGICVCFYSYKDVQKLEHLMRDKPLS
EREMGAQLINETVAYAESSACRRKVILHYFGEKYDQGQCNGACDNCRNPKEKIEVKNRVV
IVLKAIQSLEERFGTDYVVNIITGKINPQISTYGHNQLEVFGEGKEFDAHFWNSLIRQMM
LEDLIAKDIEEYGLLKITDKGKKFLRTPYSIMVSLNHQFEEEGNEEDEVAAEAQASADPV
LFEMLKELRKKVAKEKNLPPFVIFLETSLEDMATQYPTTVQELEKIQGVSKGKAVRYGKQ
FVDVISKYVEENDIVKPDDFVMKSVVNKSGLKVFIIQNIDKKMPLETIARNKELTIPQLL
DEMETIVASGTKLNLDYCIDEELDDYAQDEILEYFKGCETSSLALAREELIDSDYTLEQL
KLMRIKFLVVYGN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgtaaaggtaagtttgatagatgcattacgggaacattttggattcgattct
ttcaaagggaatcaggaaattataattaaaagcattcttgcacggaaagatacttttgtc
atcatgcctaccggcggtggaaagtctctttgctaccagctaccggcattaatgagtcca
ggatgtgctctgatcgtctctccgctcatagctttaatgaaaaaccaggtagatctagta
cgctcctacagtagcaaggataatgtagcgcattttctaaattctaccctttctaaagct
caaatcaagaaagtaagaactgatctcctatccggaaagactaaaatgttatacgtagcc
ccggaaacattgaccaagaccgaaaatcttgagtttttcaaggaactggaaatctctttc
atagcagtggacgaagcgcactgtatctctgagtggggacacgatttccgcccggaatac
cgccgcctcaaggaaatgacagatatgatcaatcccgatctgcctatcattgccctcacg
gccaccgcgactccaaaagttcaaagcgatatcgttaaaaacctgggactgcgcagtccc
gaggtatatctctcctcttttaacaggcccaacctctattatgagatccgccctaaaagg
aagaaagaacaaaccattcgcgaaatcgtcaagtttatccaccttcataagggtaaaagc
ggtatcatctatacactgaaccgtaaaaccaccgaagaactggcagatatgctgacggcc
aataacattaaggctgttgcttaccatgctggtctggatgccggtacccgtgctcaacgt
caggacatgttcctgcacgaagactgcgaggtcatcgtagctaccatcgccttcggtatg
ggtatcgataagccggacgttcggtttgttatacactacaacattcctaaaagcctggag
aactactaccaggaaacaggccgtgccggtcgtgatggactggaaggtatctgtgtctgc
ttctactcctacaaggatgtacagaagctggaacacctgatgcgcgacaagccactcagt
gaaagggaaatgggcgcccagctcatcaacgaaaccgtcgcctatgctgaaagctctgcc
tgccgccgcaaagtgatcctccactacttcggtgagaagtacgaccagggtcagtgtaac
ggcgcctgcgacaactgccgcaatccaaaagagaaaattgaagtaaaaaatcgcgtagtc
atcgtactcaaagccatccagtcactggaagaacgctttggcaccgactacgttgtcaat
atcatcactggcaagatcaacccccagatctccacctatgggcacaaccagctggaagtg
ttcggagagggtaaagaattcgatgcacacttctggaactccctcatccgtcagatgatg
ctggaagacctgatcgctaaagacatcgaagaatatggcctgctaaagatcactgataag
ggtaaaaagttcctcaggacgccttactctatcatggtttcactcaaccaccaatttgaa
gaagaaggcaatgaagaagatgaagtagctgcagaagcccaggcttccgcagaccctgtt
ctcttcgaaatgctgaaagagctccgtaaaaaggtagcaaaagaaaaaaacctgccccca
ttcgtcatcttcctcgaaacctccctcgaagatatggcgacccagtaccctaccaccgta
caggaattggaaaaaatacagggagtgagcaaggggaaagctgtacgctatggcaaacag
ttcgtggatgtcatctctaaatatgtagaggaaaatgacatcgtaaaaccggatgatttc
gtcatgaagagcgtggtgaataaaagcgggctgaaagtgttcattatccagaacattgat
aagaaaatgccactggaaaccatcgcccgcaataaagaactcaccattcctcaattgctg
gacgaaatggaaaccatcgtggcgagcggcaccaaactcaatctcgattattgcatcgac
gaagaactggacgactatgcccaggacgagatccttgaatacttcaaaggctgcgagact
tccagtctggcactggcccgcgaagaactcatcgatagcgactacacccttgaacaattg
aaattgatgcgtattaagttcctcgtagtatacgggaactaa
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