Cololabis saira (Pacific saury): 133418562
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Entry
133418562 CDS
T09849
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133418562 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133418562 (hbs1l)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133418562 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DO-GTPase2
GUCT
GTP_EFTU_D4
Motif
Other DBs
NCBI-GeneID:
133418562
NCBI-ProteinID:
XP_061563298
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Position
18:complement(27424553..27457921)
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AA seq
759 aa
AA seq
DB search
MSRHRNVRGYNYDEDFEDDDMYGQSVDDDYCISPATANQFIYSRQERQAPKEEPLEEEED
EAEDVPMSPTINPDLDPLDQAKLYSCLDHMRTVLGDSVPDSVLTQAAIKHGFDPHKALDA
VLSEDTKTAPATRSAVEEVTSLARVSQEKTPLPQRTKREPTAEKGACLSASHTDITSKAD
KQQFVQAQSALNLCDLLSHHKAEPVVGSPINQHFHQENPLPGKSRDVSHNKLDSEVVPKV
ARMTVSGKKQTMGFDVPSTEENGLVNASAQRGNSPENASMPPVLETTPRRPGTPSKSSNA
DDAPAVPTPSRSSGKTRQQINVKAELEKRQGGKTLLNLVVIGHVDAGKSTLMGHLLYLLG
NVNKRTMHKYEQESKKAGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDA
PGHKDFIPNMITGAAQADVAVLVVDASRGEFEAGFEAGGQTREHALLVRSLGVTQLAVAV
NKMDQVNWQQDRFQEIISKLGHFLKQAGFKESDVFYIPSSGLSGENLTARSSVAELTSWY
SGPSLMGQIDAFKAPQRSIDKPFRLCVSDVFKDQGSGFCVTGKIEAGYIQTGERILAMPP
NETCTVKGITLHDEALDWAAAGDHVSLTVTGMDIIKINVGCVFCDPKEPIRACTRFRARI
LLFNIEVPVTQGFPVLLHYQTVSEPATIRKLVSVLHKSSGEVLKKKPKCLSKGMNAVVEI
QTQRPVSLELYKDYKELGRFMLRYVGSTIAAGVVTEIKE
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgccacagaaatgttcggggttacaactacgacgaagattttgaagatgatgac
atgtatggacagtctgtggatgatgactactgtatatcaccagcaacagcaaatcaattc
atctactcgcgtcaagagagacaagcaccaaaagaggaacctctagaggaggaagaagat
gaagctgaggatgttcccatgtcccctaccatcaatccggacctcgaccctcttgatcaa
gccaagctgtattcttgcctggatcacatgcggaccgtgctgggagattccgtgccagac
tcagttctgacccaggctgccataaaacatggatttgacccacataaagcgttggacgct
gtcctgtctgaagacactaaaacagccccagctaccagaagtgcagttgaagaggtgact
tcgttagccagagttagtcaggagaagacgccgcttccacagagaaccaaacgggaaccc
actgctgagaaaggagcctgcttgtctgcttctcacacggacattacatctaaggcagat
aaacagcaatttgtgcaagcgcagagtgcgctaaacttatgtgatctcttatctcatcat
aaggctgagccagtggttggcagccctataaatcaacattttcaccaagaaaatccactt
ccaggtaaaagcagagatgtgtctcacaataagctggattctgaagtggtgccaaaggtg
gcccggatgaccgtctctggcaagaagcagacaatgggctttgatgtacccagcacggag
gagaatggcctcgtgaacgcatcggcacagcgaggcaacagccctgaaaatgcctccatg
cctcccgttttggagacaaccccgagacgtcctgggactccttctaaaagctcaaatgcg
gacgatgcgcctgccgttccaacgccgagccgctcctccgggaagacacggcagcagatc
aacgtcaaggcagagctggagaagagacaggggggaaaaactctcttaaatttggtagtt
ataggtcatgtggatgccggtaagagtacactgatgggccacctgctttatctgctcggc
aatgtcaacaagcgcacaatgcacaagtacgagcaggagtctaagaaggcaggaaaagca
tcctttgcctacgcttgggttctggatgaaactggagaggagagagacagaggtgtgaca
atggatgtgggcatgaccaagtttgagacgaactcgaaggtggtgacgctgatggatgca
ccggggcacaaagacttcattcccaacatgatcacaggagctgcacaggctgatgtggca
gtgctggtggtggacgccagcagaggagagtttgaggcgggcttcgaggcgggcggtcag
accagagagcacgctttgcttgtgcgttcgctgggcgtcactcagctggctgtagccgtc
aacaagatggaccaggtaaactggcaacaagatcgtttccaagaaatcatctcaaaactt
ggccatttcctgaagcaggcaggattcaaggagtctgacgttttctacatccctagcagc
ggcttgtcaggagaaaacctcaccgccaggagttcagtggcggagctcacctcctggtac
tcgggaccgagcctgatggggcagatcgatgcgttcaaggctcctcagaggtctatagac
aagcctttcagactgtgcgtctcagatgtgtttaaagaccagggttcaggcttctgtgtt
actggaaagattgaggctggttatattcagacaggagagagaatactggcaatgcctcct
aatgaaacctgcactgtcaaaggaataactctccatgacgaggctctggactgggccgca
gcaggagaccatgtcagccttaccgtcaccggcatggacatcatcaagatcaatgtgggc
tgcgtgttttgtgatcccaaggagccgattcgagcctgtacccggttcagagccagaatc
ctcctcttcaatattgaagttcctgtcacacaaggctttccagtactgttgcattaccag
acggtcagtgagccggccaccattaggaaactagttagtgttctgcacaagagcagtggt
gaagtcctcaagaagaaaccaaagtgtttaagcaagggtatgaatgctgttgtggagatc
cagacccaaaggccggtgtcattagagctgtacaaggactacaaagagctgggccgcttc
atgctgcgatatgtgggctccaccattgcggcaggggtcgtcacggagatcaaagaatga
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