Cololabis saira (Pacific saury): 133418645
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Entry
133418645 CDS
T09849
Symbol
hnrnpub
Name
(RefSeq) heterogeneous nuclear ribonucleoprotein Ub
KO
K12888
heterogeneous nuclear ribonucleoprotein U
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133418645 (hnrnpub)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csai03041
]
133418645 (hnrnpub)
Spliceosome [BR:
csai03041
]
Common components
Common spliceosomal components
hnRNP proteins
133418645 (hnrnpub)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_33
SPRY
SAP
AAA_17
CPT
Zeta_toxin
AAA_22
AAA_18
6PF2K
Motif
Other DBs
NCBI-GeneID:
133418645
NCBI-ProteinID:
XP_061563433
LinkDB
All DBs
Position
18:15197895..15209423
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AA seq
801 aa
AA seq
DB search
MSAMNVKKLKVNELKDELKRRQLSDKGLKAELMDRLQAALDAEALAGEPADAAEAAPEDQ
EGEQEGEPEELDQEDQEEQEEEEQGEPEQPQAEESMDATEEEPENGAAAADEEMVEEEDD
MDAMLKEEEEEEDKPGDPPAEGDADKDTNADQKNKKGVKRRREEHGRGYFEFIEENKYSC
ASFKSPVPPLEEEDEEFDDTKVCLDTYNCDLHFKVSRDRYSASSLTMESFAYLWSGGRAT
YGVNQGKVCFELKITEKIPVKHISSKNMEIHDVQVGWSLATGNLLLGEEEFSYAYSGKGK
KTTNCVTEDFGETYEENDVICCLLDFEGEEVVFSFAKNGGEPAVAFQVSKETLEGRNLFP
HVICHNCAVEFNFGQMETPYFPQPTGYTFMQQVPVAERVRGMKGPQTKADCEIIVMVGLP
GSGKTTWVKNHVQENLGKYYILGSDTIVDKMMINSLKRQSKDITKLTAISQRAPLFLGKF
IEIAARKKRNYILDHTNLSAPGQKRKMCLFAGFQRKAVVVCPSDDDYKQRVQKKVEGDGK
EVPEHAVLKMKGFYALPDEGESFSEVVFAELPKEDAGKLLDQYKDESKTALPAEKKPNQG
STTPKRGGGGGPRGGGGRGGKNQFGRGGPGQRGGGGRGGFQNRGNFRGGPGPRGGFNRPP
RGFLPPPAFRGGYPNRGNFSRGGGPIPSLGAAHRGAMRGNMGPRGAPMNRGGHMNRGNMN
RGGGGHMNRGGNRGHPGQFQQRGGNRGNFGGNKNRDFGNNRNSGNYGSRNGMDKAQAFNQ
SWQQGFWNQKPWSQQYQPGYY
NT seq
2406 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcgatgaacgtgaagaagctgaaggtgaacgagctgaaggacgagctgaagcgg
cgccagctctccgacaaggggctgaaggccgagctcatggaccggctgcaggccgcgctg
gacgccgaggcgctggccggggagccggccgacgcggccgaggcggccccggaggaccag
gaaggggagcaggagggggagccggaggagctggaccaggaggaccaggaggagcaggag
gaggaggagcagggggagccggagcagccgcaggccgaggagagcatggacgccaccgag
gaggagccggagaacggcgcggccgcggcggacgaggagatggtggaggaggaggacgac
atggacgccatgctgaaggaggaggaggaggaggaggacaagcccggggacccgcccgct
gagggggatgcggacaaagacacgaatgctgatcagaagaataagaagggtgttaagaga
cgccgggaggaacatggaaggggctactttgaatttattgaagagaacaaatacagctgt
gcctcttttaagtctcccgtaccccctctggaggaagaagatgaagagtttgatgacacg
aaggtctgcttggatacctacaactgcgacctacactttaaggtgtcacgggatcgctac
agtgcctcgtccctcacaatggagagctttgcttatctctggtctggaggccgagccact
tacggggtgaaccaaggcaaagtttgcttcgagttgaagattacagagaagatcccagtg
aagcacatttccagcaagaacatggagatccacgatgtgcaggttggatggtccctggcg
actggaaacctgcttctaggtgaggaggagttttcctacgcctactccgggaaaggcaag
aagacgaccaactgtgtcaccgaggactttggagaaacttacgaggagaatgacgtcatc
tgctgcctccttgactttgagggcgaggaggtggtcttctccttcgccaagaacggcggc
gagccggccgttgccttccaggtcagcaaggagaccctggaaggccgtaaccttttccct
cacgtcatctgccacaactgtgccgtggagttcaacttcggccagatggagacgccgtac
ttcccccagccgacgggctacaccttcatgcagcaggttcctgttgctgagcgcgtgcgt
gggatgaagggcccgcagaccaaggccgactgtgagatcatagtgatggtcggtctgcca
ggctcaggcaagaccacatgggtcaagaaccacgtccaagagaacctggggaagtactac
atcctaggcagtgacactatcgtggacaagatgatgatcaacagcctgaaacgccagtcc
aaggacatcacgaaactgacggcgatctcccagagagcgccgctcttcctggggaagttc
atcgagatcgcagctcgcaagaagagaaactacatcttggatcacaccaacctgtctgct
ccgggccagaagaggaagatgtgcttgttcgccggcttccagcgcaaggcggtcgtggtc
tgtccttccgacgacgactacaaacagagagtccagaagaaggtggaaggcgacgggaag
gaagtcccggagcacgccgtgctcaaaatgaagggtttctacgctctgcccgatgagggg
gaaagcttcagcgaggtagttttcgccgagctgccgaaggaggacgcgggcaagctgctg
gatcagtacaaggacgagagcaagacggcgctgccggcggagaagaagcccaaccagggc
agcacgacgcccaagaggggcggcggcggcgggccccgcggaggcggcggccgggggggc
aagaaccagttcggccgcggcgggccgggccagcgaggaggcggcggtcgcggaggcttc
cagaacagaggaaacttcagaggcggtcccggaccccgtggcggcttcaaccgtcctccc
cgcggcttcctgccccccccggccttcaggggaggctaccccaaccgggggaacttcagc
cgcggcggcggccccatccccagcctgggcgccgcccaccggggcgccatgaggggcaac
atgggcccccggggcgcgcccatgaacagaggcggccacatgaacaggggcaacatgaac
cggggaggtggaggccacatgaaccgtggaggaaaccgggggcacccgggccagttccaa
cagcgaggcggtaaccgcggcaactttggcggcaacaagaacagggactttggcaacaac
aggaacagcggaaactatggcagcagaaacggcatggacaaggcccaggccttcaaccag
agctggcagcaagggttctggaaccagaagccctggagccagcagtaccagcccggatat
tactga
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