Cololabis saira (Pacific saury): 133418861
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Entry
133418861 CDS
T09849
Symbol
ift140
Name
(RefSeq) intraflagellar transport protein 140 homolog
KO
K19672
intraflagellar transport protein 140
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
csai03037
]
133418861 (ift140)
Cilium and associated proteins [BR:
csai03037
]
Primary cilia and associated proteins
Intraflagellar transport (IFT) complex A
133418861 (ift140)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_IF140-IFT172
Beta-prop_IFT140_1st
Beta-prop_IFT140_2nd
TPR_IF140_C
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
Beta-prop_HPS5
ANAPC4_WD40
WD40_Prp19
WDR55
Beta-prop_EML
TPR_IFT80_172
Beta-prop_WDR90_POC16_2nd
TPR_GEMI5
TPR_COPA_B
Beta-prop_WDR35_TULP_N
Clathrin
Beta-prop_CAF1B_HIR1
Beta-prop_ELP1_2nd
Consortin_N
tRNA_int_end_N2
RNase_HII
TPR_8
TPR_12
Motif
Other DBs
NCBI-GeneID:
133418861
NCBI-ProteinID:
XP_061563720
LinkDB
All DBs
Position
19:complement(12902338..12932257)
Genome browser
AA seq
1443 aa
AA seq
DB search
MAVYFDHRIEAPESSDVPSQLTWHSTIPILAVASIRPGTGGNVDLYLQQGEYVESCHVER
PHQPTVLQWHPSKTVLALGWENGEVVLLTHPSGDQTVLPSLHTARITLLEWSSFGSRLIT
GDQSGALAVWRVDARGKLQGNHLVKHEYSKPLTCCIFRPASPGDDVAMLARASVSGDENA
LDMFSWKGAPLKMGPQERLAFFVSTADGKVHSVNEHCKTCTLFSVEGSIKKLFYLEKKEA
LAVITETLMLSQYMLGPEGVAQEFMKVKLSTKSGESVDIVWTENSLLITSTGEQIIRLWD
LDKDENYILSLDETLGFERGEMINSISYCAAKEILAAGTSQGRIAIWRMVVQPRSSRRDT
KYLWKLQTPTEIEGNVTLLQWGSSLNLLAANNSKTVLILCEHMMSAHFSQQVAAVQLTPT
QLSISNFSTGVHLALQSDMHIKGVCVTKDSVTVWNGKLVTVYELSGTVLRSTGSFPCESH
VVAVHGENLYTVEPNRVQIRTPQGTVKQLLTFTKAEGNPVLLNVCQSFLVVGTDTAHIRV
FELSRRDAKAHSSTKNLADQICNLGALRSVKCNANGSQVSIVITQVNGRPDHKVYFYDIE
MDTVTHFDFFTGRPSSGILQPEDNEKQQIRGSELSGLCPVSHFWDESEPRLFVCETVPVG
SESSSVGHLDMVDVLVVTLFCTQEHGLLLQDCYHKPSGLQALLALDVPYYYFSCKPGERD
PVEAPPPSQQTQPVKGAHAQFPHMVSRRALRDFVGLENCEKTTRDAMLNFSFYLTTGDMD
EAFKSIKLIKSKAVWENMARMCVKTRRLDVARVCLGNMGNARAAKALKEAEAEPEPDARV
AMLAVQLGMLEDAEQLYKSCQRFDLLNIFYQASGQWPQALETAEIHDRIHLRTTYYNYAK
YLEFMGDKTLAIAYYEKSDTHRVEVPRMLQDDTSSLEIYVTKMKDKSIYKWWAQFLESQS
DMDSALHFYESAQDFLSLVRVHCYMGNIQEASQIANDTGDRAASYHLARHYESHDDIKQA
VHFYTRAQAYNNAIRLCKENGLDDQLMNLALLSNPEDMMEAACYYEEKATHVDRAVALYH
KAGYVSKALELAFATEQFSALQFIADDLNENSDPALLARCSDFFIKHSQYEKAVELLVAA
KKYHQALEVCLTQNLTITEELAERMTVTDSKDLSENARKELLEQIADCCMRQGSYHLATK
KYTQAGNKPKAMRALLKSGDTEKIVFFANVCRQKELFIMSANYLQSLDWRENPEILKTII
GFYTKGRAPDLLAGFYEACAQVEIDDYQNYEKALDALTEAFKCLSKAKDTIGGQQEVRLA
DLQHKITLIKKFVHIRRLYVDDADEAVRLCEALLEEPELDPAVRIGDAYGFLIDHHCQQV
NFPVACRKLEELQKLLPSQNVRYYINQTSLKALQKEMGVLMERGDSRHNVREEDEVEEEL
NES
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atggcagtgtattttgaccatcgtatagaagcccccgaaagcagtgatgtaccatctcag
ttgacatggcactcaactattcctatattggctgtggcctcaatcaggcctggaactgga
ggcaatgtagacctctacctgcagcagggagagtatgtggagagttgtcatgtagaacgc
cctcaccagcccactgtgctgcagtggcatccttcaaagacagtgttggcattgggctgg
gagaatggagaggtagtgctgctcacacacccctctggagatcaaacagtgctacccagt
ctacatacagcccgcatcaccctgcttgagtggagtagcttcggtagtcgcttgataact
ggtgatcagagtggagctctagcagtatggagggtagatgccagagggaaacttcaagga
aaccatctagtaaagcacgagtatagcaaaccattaacttgctgcatcttcagacctgct
tcacctggggatgatgtggcaatgctagctcgtgcatctgtgagtggagatgagaatgct
ctagatatgttcagctggaagggagcccctctgaagatgggtcctcaagagcgacttgca
ttctttgtcagcactgctgatggtaaagtccatagtgtgaatgaacattgtaagacgtgc
acactattcagtgtagaaggttccatcaagaaacttttctaccttgagaagaaagaggcc
cttgcagtgatcactgagaccctcatgctgtcacagtacatgctgggacctgaaggagta
gcacaggagtttatgaaggtaaagttgagcaccaaatctggggagagtgtagatattgtt
tggactgagaacagcctccttatcacatcgacaggagaacagatcatcaggttgtgggat
ctggacaaggatgagaactatattttgtctcttgatgagactctggggtttgagagggga
gagatgatcaactctatttcatactgtgcagcaaaggaaatcctagcagctggtacttcc
caaggacgcatagcaatttggaggatggtagtgcaaccaagaagcagcagaagggacacc
aagtatctgtggaaattacaaacccccactgaaatagagggaaatgtcactcttctacag
tggggctccagcttgaatctgttggcagctaacaattcaaagacagtgctgatcctttgt
gagcatatgatgtcagcccacttcagtcagcaggtggcagcagtgcaacttaccccaaca
cagctcagcatctctaacttcagcacaggagtgcaccttgctcttcagtctgacatgcac
atcaaaggagtgtgtgttaccaaggactcagtaacagtctggaatggcaaactagtcacc
gtctatgagctttcagggacagtgttgcggagtacaggatcatttccttgtgagtcccac
gtggtagctgtgcatggtgagaacctctacactgtggaaccaaacagggtgcaaatccgt
acgccgcagggcacagttaagcagcttttaacttttaccaaggcagagggaaatcctgtg
ctgctgaatgtgtgccagtcctttctggtcgtaggtacagacacagcacacattagagtt
ttcgaactctctagaagggatgccaaagctcacagcagtactaaaaacttggctgaccag
atctgcaatctgggagctctgaggtcggtcaagtgtaacgctaatggaagccaagtcagc
atcgtaatcactcaggttaacggacggccagatcataaagtctacttttatgacattgag
atggacactgtgacacattttgacttcttcactggcagaccgtccagtggcatcttacag
ccagaggataatgaaaagcagcagatccggggatctgaactgagtggtctctgtcctgtg
tctcatttctgggatgagagcgaacctcgacttttcgtttgtgagacggtacctgttgga
tctgaatcttcatcagtgggtcatttggatatggtggatgtgttggtggtgacgctcttc
tgtacacaggagcatggactcctcctgcaggactgctatcacaaaccttcaggcctacaa
gcactgcttgctcttgatgtgccctactattatttcagctgcaagccaggtgaaagggat
ccagttgaggccccaccaccttcacaacagacccagcctgtaaaaggagcacatgcccag
ttcccccatatggtatccaggcgagctctgagagactttgtgggcctggagaactgtgag
aagaccactcgtgatgccatgctcaacttcagcttctacctgaccactggtgatatggat
gaggcttttaagtctatcaagctcatcaagagtaaagcggtttgggaaaacatggctcgg
atgtgtgtgaaaacgcgccggctggacgtagcacgcgtgtgccttgggaatatggggaat
gccagggcagcaaaagcattgaaggaggcggaggctgaacctgaaccagatgcccgagtg
gcgatgctggctgtacagcttggcatgctggaagatgcagagcagttgtacaagagctgt
caacgctttgacctgctgaacattttctaccaggcctcgggccagtggccgcaagctttg
gaaacggctgaaatccacgatcgcatacatctgcgcactacctactacaattatgccaaa
tatttggagttcatgggcgacaagacactggccattgcttactatgagaaatcagacacg
catagagttgaggtgcccagaatgcttcaggatgatacgtcatctctagaaatttacgtt
accaaaatgaaagacaagagcatctacaagtggtgggcccagtttctggagagccagtca
gacatggattcagcactgcatttctacgagtcggctcaggatttcctctccctggttcga
gttcactgctacatgggcaacatccaagaggcatctcaaatagccaatgatacaggtgac
agagcagcatcgtaccacttggccagacattatgagagccacgatgacatcaaacaagca
gtccacttctatacacgagctcaagcctacaacaatgctatacgactttgtaaggagaac
ggtcttgatgaccagctgatgaacctggctctgctcagtaacccagaagacatgatggag
gccgcctgttactatgaagagaaagccacccacgtggaccgagctgtcgcattgtaccac
aaggctggttatgtctccaaagctctagagctggcctttgccactgagcagttctctgca
cttcagttcatcgcagatgatcttaatgagaactctgacccagccctcctagctcgctgt
tctgatttcttcatcaaacattcccagtatgagaaggcggtggaattactggttgcagcc
aagaagtaccaccaggcactggaggtgtgtctgacccagaacctgactatcacagaggag
ctggctgagagaatgactgtaactgactcaaaggatttgtctgaaaatgcccgcaaggaa
ctccttgagcagatagctgactgctgcatgcgtcagggtagctaccacctggccacaaaa
aagtacacacaggcaggaaacaaacccaaggcaatgagggcactcctcaagtcaggtgac
acagagaaaatagtgttctttgccaatgtttgtcgtcagaaagagcttttcatcatgagc
gccaactatctccagtctctggactggcgtgaaaacccagagatcctaaagacaatcatt
ggtttctacactaaaggcagggcgccagacctgcttgctggcttctatgaagcttgtgct
caggtggagattgatgattaccaaaattatgagaaggctctggatgctttgacagaggct
ttcaagtgtctctcaaaagcaaaggacactataggtggacaacaggaagtaagactggct
gacctgcagcataagattacccttatcaagaagtttgtacatatacgcaggctgtatgtt
gacgatgcagatgaagctgtgaggttatgtgaggccctgctggaggagccagagttggac
cctgctgtcaggattggagatgcatatggtttcctcattgaccaccactgtcaacaagtc
aactttccagtggcctgccgtaagctggaggagctccagaagctgctgccatcacaaaac
gtcaggtactacatcaaccagactagcttaaaggccctgcaaaaggagatgggtgtactc
atggaacgtggtgactccagacacaatgtgagggaggaggatgaagtggaggaggaatta
aacgagtcctaa
DBGET
integrated database retrieval system
