KEGG   Cololabis saira (Pacific saury): 133419193
Entry
133419193         CDS       T09849                                 
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
  KO
K03177  tRNA pseudouridine55 synthase [EC:5.4.99.25]
Organism
csai  Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:csai00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:csai03016]
    133419193 (trub1)
Enzymes [BR:csai01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.25  tRNA pseudouridine55 synthase
     133419193 (trub1)
Transfer RNA biogenesis [BR:csai03016]
 Eukaryotic type
  tRNA modification factors
   Psudouridine synthases
    133419193 (trub1)
 Prokaryotic type
    133419193 (trub1)
SSDB
Motif
Pfam: TruB_N TruB_C_2 Pus10_C GAIN_A
Other DBs
NCBI-GeneID: 133419193
NCBI-ProteinID: XP_061564211
LinkDB
Position
19:2749132..2776363
AA seq 338 aa
MAGVGAGAGSLTGPLSSSLARLQALHGLFAVYKKPGPTSAEVLNELKEALLKEAGVKNCN
PRKRGKQVLKMGHGGTLDSAASGVLVVGIGNGTKMLSSMLSGSKKYVAVAELGKATDTLD
ATGAVVLETAFEHVTRLDLEEKLKSFTGEILQVPPLYSALKQDGQRLSVLLKKGHKVEAK
PARQVFVHCLKLQEFKPPIFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELTRTKQGQF
TLQDHVLREDRWTLDCIVQSLHPCSEGGDGDQEGPEKTGKDLKRLAETGKNQQSPEEPNG
DQQRPAKTSRTNGDQQEPAKTSRTNGNQQEPEEKTGES
NT seq 1017 nt   +upstreamnt  +downstreamnt
atggccggcgtgggtgcgggtgcgggttccctgaccgggcccttgagcagctctctggcc
cgcctgcaggcgctgcacggcctgttcgccgtttacaagaaacccggtccgacttccgcc
gaagtgctgaacgagctgaaggaggcgctgctgaaagaggccggcgtcaagaactgcaac
ccgaggaagagagggaagcaggtgctgaagatgggacacggagggacgctggacagcgcg
gctagcggagtgctagttgttggaatcggaaacggaaccaagatgctgagcagcatgttg
tctggatccaagaaatacgtagcggtagcagagctgggaaaagccaccgacaccctggac
gccaccggcgccgtcgtgctggagacggccttcgaacacgtgacccggctggacctggag
gagaagctcaagtctttcaccggagaaatcctgcaggttcccccgctctactctgcgctg
aaacaggacggccagcgtctgtctgtcctgctgaaaaaaggccacaaggttgaggccaaa
ccagcgcggcaggttttcgttcactgcctgaagctgcaggagttcaagcccccgatcttc
acgctggacatcgagtgtggcggaggcttctacgtccggagtctggtggacgacctgggg
aaagctctgtcctcctgcgctcacgtgaaggagctgaccagaaccaagcagggccagttc
accctgcaggaccacgtcctgcgggaggaccgctggacgctggactgcatcgtccaatca
ctgcacccctgctccgaggggggggacggggaccaggagggaccggaaaagactggtaaa
gacctgaaaagactagcagagaccggtaaaaaccagcagagccccgaggaacccaacgga
gaccagcagagaccggcaaagaccagcagaacaaacggagaccagcaggaaccagcaaag
accagcagaacaaacggaaaccagcaggaaccagaagagaaaacgggggaaagctaa

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