Cololabis saira (Pacific saury): 133419193
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Entry
133419193 CDS
T09849
Symbol
trub1
Name
(RefSeq) probable tRNA pseudouridine synthase 1
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
csai03016
]
133419193 (trub1)
Enzymes [BR:
csai01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
133419193 (trub1)
Transfer RNA biogenesis [BR:
csai03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
133419193 (trub1)
Prokaryotic type
133419193 (trub1)
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Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Pus10_C
GAIN_A
Motif
Other DBs
NCBI-GeneID:
133419193
NCBI-ProteinID:
XP_061564211
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All DBs
Position
19:2749132..2776363
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AA seq
338 aa
AA seq
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MAGVGAGAGSLTGPLSSSLARLQALHGLFAVYKKPGPTSAEVLNELKEALLKEAGVKNCN
PRKRGKQVLKMGHGGTLDSAASGVLVVGIGNGTKMLSSMLSGSKKYVAVAELGKATDTLD
ATGAVVLETAFEHVTRLDLEEKLKSFTGEILQVPPLYSALKQDGQRLSVLLKKGHKVEAK
PARQVFVHCLKLQEFKPPIFTLDIECGGGFYVRSLVDDLGKALSSCAHVKELTRTKQGQF
TLQDHVLREDRWTLDCIVQSLHPCSEGGDGDQEGPEKTGKDLKRLAETGKNQQSPEEPNG
DQQRPAKTSRTNGDQQEPAKTSRTNGNQQEPEEKTGES
NT seq
1017 nt
NT seq
+upstream
nt +downstream
nt
atggccggcgtgggtgcgggtgcgggttccctgaccgggcccttgagcagctctctggcc
cgcctgcaggcgctgcacggcctgttcgccgtttacaagaaacccggtccgacttccgcc
gaagtgctgaacgagctgaaggaggcgctgctgaaagaggccggcgtcaagaactgcaac
ccgaggaagagagggaagcaggtgctgaagatgggacacggagggacgctggacagcgcg
gctagcggagtgctagttgttggaatcggaaacggaaccaagatgctgagcagcatgttg
tctggatccaagaaatacgtagcggtagcagagctgggaaaagccaccgacaccctggac
gccaccggcgccgtcgtgctggagacggccttcgaacacgtgacccggctggacctggag
gagaagctcaagtctttcaccggagaaatcctgcaggttcccccgctctactctgcgctg
aaacaggacggccagcgtctgtctgtcctgctgaaaaaaggccacaaggttgaggccaaa
ccagcgcggcaggttttcgttcactgcctgaagctgcaggagttcaagcccccgatcttc
acgctggacatcgagtgtggcggaggcttctacgtccggagtctggtggacgacctgggg
aaagctctgtcctcctgcgctcacgtgaaggagctgaccagaaccaagcagggccagttc
accctgcaggaccacgtcctgcgggaggaccgctggacgctggactgcatcgtccaatca
ctgcacccctgctccgaggggggggacggggaccaggagggaccggaaaagactggtaaa
gacctgaaaagactagcagagaccggtaaaaaccagcagagccccgaggaacccaacgga
gaccagcagagaccggcaaagaccagcagaacaaacggagaccagcaggaaccagcaaag
accagcagaacaaacggaaaccagcaggaaccagaagagaaaacgggggaaagctaa
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