Cololabis saira (Pacific saury): 133419355
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Entry
133419355 CDS
T09849
Symbol
si:ch211-141o9.10
Name
(RefSeq) probable endonuclease 4
KO
K10771
AP endonuclease 1 [EC:
3.1.11.2
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
133419355 (si:ch211-141o9.10)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
csai03400
]
133419355 (si:ch211-141o9.10)
Enzymes [BR:
csai01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
133419355 (si:ch211-141o9.10)
DNA repair and recombination proteins [BR:
csai03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
133419355 (si:ch211-141o9.10)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AP_endonuc_2
Motif
Other DBs
NCBI-GeneID:
133419355
NCBI-ProteinID:
XP_061564465
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Position
19:complement(25101920..25109255)
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AA seq
323 aa
AA seq
DB search
MAGKRGKYGSLPAKTGDLTDMEDNYSEERGDGRKRSRGSKKYIGAHVGIQGGIWKAVGSC
VGMGGSSFALFLGSQRSWKRPGLDHSAAEKFQEQCSLHGFDPSHILPHGSYLMNCGSPKD
DVFEKSRALLVDELSRCSTLGLSLYNFHPGSSLGTITTEQCVDKIAGSINHAHQQTPAVV
TVLENMSGQGSTLGGKFSELKSIIDKVRDQNRVGVCLDTCHAFAAGYDLAAEGGVKAMLD
QFDQEVGLRYLRAVHLNDSKGKLGCHLDRHEDIGKGHIGISAFQDIVNEPRLDNIPLILE
TPGRPGFEYTEQIELLHSLCETK
NT seq
972 nt
NT seq
+upstream
nt +downstream
nt
atggcgggaaagaggggtaaatacggtagtttaccggccaaaacgggagacttgacagat
atggaggacaactacagcgaggagaggggagacgggaggaagaggagtcgagggagtaag
aaatacattggagcacatgttggtattcaaggtggaatatggaaagccgtggggtcttgt
gtagggatgggcggcagtagttttgcactgtttctgggatcccagcggtcatggaagagg
cctgggttggaccattcagctgcagaaaagtttcaagagcaatgctcgctacatggtttt
gacccatctcacatcctgcctcatggatcctacctgatgaactgtggatctccaaaagat
gatgtgtttgaaaagagtcgggccctgctggtggacgagctcagtcgctgcagcacccta
ggcctcagcctctacaactttcaccctggctcttccttggggaccatcaccacggagcag
tgcgtggacaagatagcaggatccattaaccacgctcaccagcaaacaccggcggtggtc
acagtgttggagaacatgagcggccagggcagcacactgggtgggaagttctccgagctg
aagagcatcatagacaaagtgagagaccagaacagagtgggagtgtgtctggatacctgt
catgcctttgcagcaggatacgacctggcagcagagggaggagtgaaggccatgctcgat
cagtttgatcaggaagtcggccttcgctacctcagagcagtccacctcaatgattccaaa
ggtaaacttggctgtcaccttgatcggcatgaagacatcggtaaaggtcacattggaatc
tcagcatttcaagacatagtcaatgagcccagactggataatatccccctgatcctggag
acacccggacggcctggattcgaatacactgagcaaattgagctgctgcattccctatgt
gagacaaaatga
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