Cololabis saira (Pacific saury): 133419808
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Entry
133419808 CDS
T09849
Symbol
tnrc6ba
Name
(RefSeq) trinucleotide repeat-containing gene 6B protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133419808 (tnrc6ba)
03036 Chromosome and associated proteins [BR:
csai03036
]
133419808 (tnrc6ba)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133419808 (tnrc6ba)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133419808 (tnrc6ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
RRM_occluded
RRM_1
Motif
Other DBs
NCBI-GeneID:
133419808
NCBI-ProteinID:
XP_061565214
LinkDB
All DBs
Position
19:25123795..25160095
Genome browser
AA seq
2138 aa
AA seq
DB search
MEDKKRKKEDKRKREASQRVTEQKNKVPDLTKPASAHSPATQSSSASPSPGPHPSASPTP
ATSGPGSAATPSQGGNNAKRLAVANGQPSSNTSSSSTVGGPSAAGNSSTSSGGGTQAPQQ
PPRYMPREVPPRFRCQQDHKVLLKRGQPPLSSMLLGGGGGGGDGPNANMAAVSDSGMASS
SMTPTSSSVAASTTISNYANSMWGSSSGSQASSQGREKVIVDGNDLEEWPSIAGSDGGNS
GNNGMPVNSISASGNQSSPTSSFPLPNECMQSSNSVAWGTAATQGHLGGGTAVAATGPLL
QQPSSLSKAPAVPGSHDANGPVDGSSGIPGANFSPNANPSAWPALVQQDGLAAAGEGLTS
FHHQGSGGSVNDSASLGLGGGAGGVLGSHPSISVNKSSTHQHQLHQMQSRDREVGGGKWD
SESAGPKSAGGERMEGGMDHDVGGGGMSVGDHSLASSWRGQPSCPAANSKTGASRTDGWD
TGGSGGLAAAEGDKGTSSWGYPSSTSGGNAWGNAGNGGNGGQTSGASQGGWGFSGVGGVG
GGGGERVAGSDWGGSSTAVGGTNPGSEEMGACSSNSSSSGGSTVGNPPAASSSSSTTTTT
NRVWDNQKGESETGEWGDGAEGQEGRGGSSSSGGNSRNGSAHSSNRPRRQALNADAALQN
LLSRSDLDPRVLSNTGWGQTQIRQNTTWDVEDVSGQSKGGTATSSMKHQSSVGGPTQYSS
GPRTLSTDSKGPGVSSSLAPSTGSSGEGWESSSNSSSSGTSLSGRAPPPTCSNMRSFGVS
QSGPVTTTAPGMGSGVIPGAGQQSKAMGWAGGGIGSADSHEAKGWPNEEWRGKTRGEKGG
WGDIGQKGESVSGGWGGSQQEKGTGGWKDVRGSEEGSGWGSEPKVGSGKDWVEKESKSSN
SGGWGDERRNGGHSGGDSSGSGWGSWDDRAPRRTWGAGDTGGGGSGGGGVDSGGGMGSKP
HQNWSGGNKMHQMPNCQSGSTSGPQAQLQQQQSQPHNQHPQLQQVLDQGAMQGGGGRKLI
SQAQAHNQSSGWSSGPIPSVSGGGGNGSEPSGWEEPSPQSISRKNEIDDGTSAWGDPTHY
NYKPVNLWDKNSGPGSQQPQGQQHQQHQQQQQQQQQQQHQQQQHQQQQHQQQQQQHQQHP
QQQHPQQQQQQQQNQHQQQHQQQHQQQQQHQQQHQPPPTQPQPSRHAAAIGEPTGWGGTS
PASPTVDNGTAAWGKSSDTPTGWRDPDDAGGKTSCWGNPSSNSIRSVSKSMQDGWGDKDS
SVAASRHSSWEDEEEGGGMWNSAGSQGNSSSWGQGSGGGWGQGHTGKKPINKGPLKSGGG
DSWMSPINRQFSNMGLLNDDPSGPNIDLGPSSLQEKKMEAEKRGIGMIDYNGDLRKGARG
SGVGPIYRPGTKEAAPGDAGQYYDKPLHLINQDGCLGEEGPCSLYSPPTVYKPHTLFNHS
IPFRQGGHSIFGSTGGMSQTRHQPSIPPMNQSPGIRAQVPHQFLSPQVPGSVLKQMPPPS
GSMGSVGGVGGVAGVGGGVFPPQLSPQHIAMLSSIYPPHIQFQLACQLLLQQQQQPSQQQ
QLLQNQRKFTPNVRQQADPQQLARIMAVLQQQRQQQVGGLGGSSKLSPSHHGGVGPKLPG
ADPMSHPGLAAYSGFGSGLNLPDLGGSMVGGPGAMKDLGSQQSRFKWMMEGNCSPDSASP
ENPYHKNGPVTPIKMPASSPYSSYDMMVGDGLSDNWHRTPGNKMGTKPTNTTSWPPEFQP
GVPWKGIDRVDPESDPYMTPGSMMGNTGSPSLNDTEHQLLQDNTDSTPPLNTLLPSPGAW
PYSASDSPLSNAHNSAKYTDYKTSWPPEPIGHKSWKASRGSSQNQLSRPPPGIPSQKQPS
PSPWSGGAPRLASRGWGSGSSTTGSTWSDGSSRESCWLVLSNLTPQIDGSTLKTICMQHG
PLLTFHLGLTQGSALICYNSKQEAAKAQSALHMCVLGNTTILAEFVSEEDVARYIAHSQA
GGAGSGATAAGSAGVGPVAASAVGVSSNGGSCERGGAGCSTVGGGVEGASSGGAGNGGAM
SSSSGWQSLESTGSSLDQSATPGPGLGIFSQWSSNGTCVGGAGGVEARRQGLWGGVGGMS
GAGYPTSSLWGSPALDDRHQMGSPASLLPGDLLGGGAD
NT seq
6417 nt
NT seq
+upstream
nt +downstream
nt
atggaagacaagaaaaggaaaaaagaagacaaaaggaaaagggaagcctctcagagggtt
acagagcaaaagaacaaagtgccagacttgacaaagccggcttctgcccactctcctgcc
actcagagcagctctgcctcccccagccctggaccccacccctctgcttctccaacccca
gcgacctcaggccctggcagtgctgccaccccgtctcagggcggcaacaatgccaagcgc
ctggcagtggccaacggacaacccagctccaacaccagttcttcctccaccgttggcggc
cccagcgctgctggaaatagcagtacaagtagcggaggcgggactcaggcgcctcagcag
ccaccacgctacatgccaagagaagtgccgccacgattccgctgccagcaggaccataaa
gtgctactgaagaggggtcagccaccactgtcctccatgctgctgggaggtgggggtgga
ggaggggatggtccaaatgcaaacatggctgctgtctcagattctggcatggcatcgtcc
tcaatgacccccacctcatcatcagttgctgcttctacaactatttccaattatgcaaat
tccatgtggggatcaagctcaggcagccaggcctcctctcagggcagggagaaggtcatc
gtggatggcaacgatctagaggagtggccgagtatagctggcagtgatggagggaatagt
ggaaacaacggaatgcctgtgaatagcatcagtgcctctggcaaccaatcctcacccact
tcctcattccctttgcccaatgaatgtatgcagtcgtccaatagtgttgcatgggggacg
gctgccacccagggtcatcttggaggaggtactgccgtagctgcaactgggcctctgcta
caacagccctcctcactttccaaagcccccgctgtgccagggagccatgatgccaatggc
cccgttgatggtagcagtgggattccaggtgccaacttcagtccaaatgccaacccttca
gcctggcctgccctggtgcagcaggatggcctcgccgctgcaggggaaggactgacttcc
tttcatcaccagggctctggagggtctgtcaacgactctgcttccttgggcctgggaggc
ggggcaggcggggtgctgggaagtcacccatctatatctgtgaataagtcaagcacccat
cagcaccaacttcaccaaatgcaatctagagacagagaggtgggaggagggaagtgggac
agtgaatcagcaggaccaaaaagtgcagggggagaaaggatggagggaggaatggaccat
gatgtgggaggaggcggcatgagtgtgggagaccacagccttgcttcttcatggagaggc
cagccttcttgccctgcagctaactccaaaacgggtgcctcaaggactgatggatgggac
actggtggaagtgggggattagcagctgctgaaggggataaagggacctcgagttgggga
tatccttcttccacaagtgggggtaatgcttggggcaatgctgggaatgggggaaatggt
ggccaaacctccggagcatctcagggagggtgggggttttcaggggtaggaggggtagga
gggggaggaggggagagagttgctggtagtgactggggtgggagctctactgctgttggt
ggcactaatccaggaagtgaggaaatgggagcctgtagtagtaatagcagcagtagtgga
ggaagcacagtgggcaacccccccgctgcttcctcctcctcttcaaccaccaccactaca
aacagagtctgggacaatcagaaaggagagagtgaaacaggggaatggggtgatggggca
gaaggacaggaagggcgagggggatcatcatctagtggtggaaattcccgaaatggaagt
gcacatagcagcaatcgtcctcgccgacaggcacttaatgctgacgctgccttacagaac
ctgcttagtcggtctgatttggacccccgggtgctgtcaaacacaggctggggccaaact
cagatccgacaaaacacaacctgggatgttgaggatgtctctggacagagcaaaggtgga
actgcgacaagttctatgaaacaccaatcttctgttggtggtcctactcagtattctagt
ggacctaggaccctaagcactgattcaaagggtccaggggttagttcctccttggctcct
tctaccgggtcctctggagagggctgggagagcagtagcaacagtagcagtagcgggacc
tctttgtcagggagagcgccgccaccaacatgctccaacatgaggagttttggcgtttcg
cagtcagggccagtgactacaactgcacctggtatgggatcaggggtcatacctggggcc
ggccagcagtccaaggctatgggctgggcaggaggaggaattggttctgcggatagccat
gaagccaaaggttggccgaatgaggaatggagaggcaaaactagaggagagaaaggagga
tggggtgatattgggcaaaagggtgagtcagtgagcggaggctggggaggaagtcaacag
gagaaagggacaggggggtggaaagacgttagggggagtgaagaaggaagtgggtgggga
tcagaaccaaaagtgggctccggtaaggattgggttgagaaagagtccaaatcaagtaat
agtggtggatggggagacgagaggaggaacggaggacactcaggtggagattcaagcggg
agtggttgggggagttgggacgaccgggctccccggaggacctggggagcaggggacaca
gggggaggaggcagtgggggagggggggttgattcaggtggaggcatggggtccaaaccc
catcagaactggagtggaggaaacaaaatgcatcagatgccaaactgccagtcgggctcc
acctcaggcccacaggcacaactgcaacagcaacaatcacagccccacaatcagcatcca
cagctgcagcaggtgttggaccaaggggctatgcaagggggcggaggaaggaaacttatt
tctcaagcccaggcacacaaccaaagctcaggctggagctcgggacccatccctagcgtc
tccggaggtggaggaaatggatctgaaccaagcggctgggaggagccctcaccgcagtct
attagcaggaagaatgagatagatgatggaacatcagcatggggagacccaacccattac
aattacaagccggtcaacctgtgggataagaacagtggtcctggtagtcagcagcctcag
ggtcagcaacaccaacagcaccaacaacaacagcagcagcagcaacagcaacaacaccaa
cagcaacaacaccaacagcaacaacaccaacagcaacaacaacaacaccaacaacaccca
caacaacaacacccacaacagcagcagcaacaacagcaaaaccaacaccaacagcaacat
caacagcaacatcaacagcaacagcaacatcaacagcaacatcaaccacctccaacacag
ccccagcccagcaggcacgctgcagctattggagaaccaacaggctggggggggacctct
ccagctagtcctacagtagacaatggcacggctgcttggggaaagtcaagtgacactcct
actgggtggagagaccctgatgatgctggaggaaagacatcatgctggggaaacccgtct
tcaaactcaatcagatctgtttcaaagtctatgcaagatggctggggagacaaagacagc
tcagtggccgcctcgcgtcactcaagctgggaggatgaagaggagggcggtggcatgtgg
aatagcgctggctcccagggaaacagctcctcgtggggacagggaagcggtggaggctgg
ggacagggccacactgggaagaagcccatcaacaagggtccgctgaaatccggtggagga
gattcatggatgagccccatcaacagacagttctctaatatggggctgctgaatgatgat
cccagtggaccaaacattgacctcggtccaagttctctccaggagaaaaaaatggaggcg
gagaaaagaggcataggaatgattgattacaatggagatttgaggaaaggagcaagagga
agtggagtggggccgatttatcgtcctgggactaaagaggcagcaccaggggatgctggc
cagtactatgacaagcccttgcatttgatcaatcaggatgggtgccttggggaggagggt
ccttgttctctgtactcaccacccactgtctacaagccccataccctcttcaaccactct
atcccctttagacaaggtggtcacagtatctttggtagcacaggagggatgtcccaaaca
agacatcaaccaagtatcccgccaatgaatcagtcccctgggatacgagcacaagtgcct
catcagttcctgtcacctcaggtgccaggctctgtgctgaagcagatgccccctcccagc
gggtccatggggagtgttggtggtgtgggaggggtggcaggagtcgggggaggtgtgttt
cctccgcagctgtcgcctcagcatattgccatgctcagcagcatctatccacctcacatc
cagtttcagctggcttgtcagctcctcctccagcagcagcagcagccatcacagcaacag
cagctgctgcagaaccagaggaagttcacgccaaacgtgcggcagcaggccgaccctcaa
caacttgcccggattatggccgtgcttcagcagcagaggcaacagcaggtcggaggttta
ggtggaagctccaaactctctccctctcaccacggcggggtgggtcccaaactgcctggg
gctgatcccatgtcccacccaggcctggctgcttactccgggtttggttcagggctgaac
cttcccgatttaggtggctccatggttggggggcctggagccatgaaggatttggggagt
cagcagtctcgtttcaaatggatgatggagggaaactgttctccagactctgcctcacct
gagaatccgtaccacaaaaatggtcctgtgacccccataaagatgccagcgagctcaccg
tactccagttacgacatgatggtcggagatgggctgagtgacaactggcatcgcacccct
ggcaacaagatgggtaccaaacctaccaacaccacaagctggccccctgagttccagcct
ggtgtgccatggaagggaatcgaccgcgtcgaccctgagtccgacccttacatgaccccc
gggagcatgatgggaaacacagggtcccccagtcttaatgatacagagcaccagttacta
caagacaatacagattccactcctcccctgaacaccttgctgccttcacccggtgcctgg
ccttacagtgcctcagacagccccctcagcaacgcacacaactcagcaaagtacacagac
tacaagaccagttggcccccagaacccattggacacaagtcttggaaagccagtcggggc
agcagccagaaccagttatcccgcccacctccaggcatacccagtcaaaagcagccgtcg
ccttccccttggtccggaggagctcctcgattggccagtcggggctggggaagcggctca
agcactactggctcgacctggagtgatggcagctctcgggaaagctgctggttggtgctc
agtaacctcacaccacagatcgatggctctactctgaaaaccatctgcatgcaacacggc
ccattgctgaccttccacctcggcctcacccagggaagcgctctgatctgctataactcc
aaacaagaggcagccaaggcccagagtgccctccacatgtgtgttctgggtaacaccacc
atcttggcagagtttgtcagtgaggaggacgtggctcgctacattgcacattcccaggca
ggaggagcaggaagcggagctaccgcggccggctctgcaggcgtggggcccgtcgccgcc
tccgccgtcggggtgagcagcaacggaggaagctgtgagcggggcggagcaggatgcagc
acggtaggaggcggagtggagggagcctcgtcgggaggagcaggaaacggaggagccatg
tcttccagttcagggtggcaaagtctggaaagcacaggcagctcattggaccagtctgcc
actccagggcctggactcgggatcttctcccagtggagcagcaatgggacttgcgtgggc
ggagcaggcggcgtggaggccagaaggcagggtctctggggaggggtgggggggatgagc
ggggcagggtaccccaccagcagcctctgggggtctccagcactcgacgaccggcaccag
atgggaagccccgcatcactgctgccaggggacctgctggggggcggcgctgactga
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integrated database retrieval system
