Cololabis saira (Pacific saury): 133420100
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Entry
133420100 CDS
T09849
Symbol
acin1b
Name
(RefSeq) apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03013
Nucleocytoplasmic transport
csai03015
mRNA surveillance pathway
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133420100 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
133420100 (acin1b)
03015 mRNA surveillance pathway
133420100 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133420100 (acin1b)
03041 Spliceosome [BR:
csai03041
]
133420100 (acin1b)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
133420100 (acin1b)
Spliceosome [BR:
csai03041
]
Complex C
Other components
EJC/TREX
133420100 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
RRM_1
Motif
Other DBs
NCBI-GeneID:
133420100
NCBI-ProteinID:
XP_061565656
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All DBs
Position
20:20788319..20812105
Genome browser
AA seq
1165 aa
AA seq
DB search
MADEDITLDGKPLQSLRVADLKAALEQRNLPKSGQKNTLLKRLKGALMLENLQKSSSSNS
GLQPNSQIGEEMCQNSFIKQYLAKQQELLRQRLEREAQQEEEADESPGGPEEDEDHSEDN
DNCSYVSKHRTMLPQSFIAKPGFRGEESMIGHGSGPTMQHQESAEAPGPRMQRGQGHKEP
PAPSPPRAVASLSVRVLGQPGCQVLPPAVPPSQEKESTAPSELGSAHSILHFSRSARSSA
GNHVHDDSDDEDDDDESDKDEDWGPAQGRGQRRKKATAPMLQMAPSVPLAAARSKRKLQP
PQHIPPAQAHHAPLQLRHPTPPPSPPPNLFPLPDTPKQSPPDTDDQEGEGPAMQKQYSDS
SSRSSSPELPGLRKPGPLSLLIHKMESEEATSTPGMSREAHQSTAGCSSESPLQGSASKR
QQESREKEEKERERQQELEMERRKIQEQERQRNLEKEKENKRKQLEEEKTKKCLEVEKRR
EEKQLKGEKEQEKAYKGRVVVSEAQDTGSSSESDSKSDSSSRSSQSSSSSEEKTKPTNQL
KKRDQRKEVDDEKNFSKGLEKQYPSKREVSEPSTAAITEVEPDSESSMAEQPVSSAEPEN
SESRLEESTTPKAFAARKISITSSKASPATTDGGGGESDIGNAAGRKRRWGSSTAVTVKK
PSISITTDSLKSLIPDIKVNQEAVVELHPEELQLSGDEDNMDTSRADPDKGLKIRRTVTQ
VVPSDSQENGQTNEEEEEEEEEEEAVEKKEKEKEHQASRDKRMNSLSEETSETQISVNLD
GETKKVTSSEGLVRRSISQQKTGVSVTIDDPVRTTRQPSPPRGKISNIIHVKNLVRPFTL
VQLKELLNRTGSIVEEGFWIDKIKSHCYVTYTTTEEAVATRTALHGVKWPPSNPKVLNVD
FCEQDELDFHKGVLKPEKEENLPVPPPEVPQNRLPPLMPERDRDRDRERDRERERDRERE
RGVRDLWAERQREMERRERARGEREWDRDKIREFARPGEDGRRSRSRDRERRRRERAKSK
EKKTDKKEKGDEPPAKMLDDLFLKTKAAPCIYWLPLTEEQAAQRLLDRTERQKERERRRK
EREEEELKKREEEKKERLKGREKDGSAVAGGTTKRGGDGDRERDRVRDREEDKRRDGSHR
SRRPSPGAGGGRRSHSRSNPRDRRR
NT seq
3498 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagatattacgcttgatggaaaacctctacagtcgctccgagttgcggat
ttgaaagccgctctggagcaaagaaacctcccaaaaagtgggcagaaaaacacactcttg
aagcggctcaaaggggcactgatgctggaaaatctgcagaagtcctcttcctccaacagt
gggctgcagccgaattctcagatcggggaggaaatgtgccagaacagctttataaaacag
tatctggccaagcagcaagagctccttcgtcagaggctggagagggaagcccagcaagaa
gaagaagctgatgaaagcccaggtggaccagaggaagatgaagatcattctgaagacaac
gacaactgttcgtatgtctccaagcatcgaaccatgctgccccagtccttcattgccaag
cctggttttagaggagaagagtctatgattggtcatggctcaggtcccactatgcagcac
caggagtccgctgaggctccaggacctcggatgcagcgaggacaaggacataaagagcca
ccagccccttcccctcctcgtgctgttgcctccctgtcagtgcgtgttctgggacagcca
ggttgtcaggtactgccccctgctgtaccaccaagccaggagaaggagagcacagcccca
agtgaactgggatcagctcattctatcctccacttcagtcgatctgccaggagttctgca
ggaaatcatgtccatgatgacagtgatgatgaagatgatgatgatgagagtgataaggat
gaggactggggacctgctcaaggcaggggacaaagaagaaagaaagctactgccccaatg
ctgcagatggcccccagtgtcccactagcagctgcaagatctaaacgcaagcttcaacct
cctcaacatatcccaccagcacaagcccatcatgcacctttgcagctgcgtcaccccaca
cctcctccctctccaccccctaacttgttccctttacctgacactcccaaacaaagccca
cctgacacagatgatcaggaaggagaaggcccagccatgcagaaacaatattctgattca
agctctcgttccagtagtcctgaacttcctgggctgcgcaagcccgggcccctttctctg
ctaatacacaagatggagtcagaagaagcgaccagcactcctggtatgtcaagagaggca
catcagtccactgctgggtgttccagtgaatctccattgcaaggatcagcatccaagagg
caacaagagagtagagagaaggaggaaaaggagagagaacgccagcaagagctagagatg
gagagaaggaaaatacaagaacaggaaagacaaagaaacttggaaaaagagaaggaaaat
aaaagaaaacaactggaagaggaaaaaacgaagaaatgtctggaagttgagaaaagaaga
gaggagaaacagttaaaaggggaaaaggaacaagagaaagcctataaaggcagggtggtg
gtgtctgaggcccaagatacaggctcttcatcggagtctgactccaaatcagactcctct
tcaagatcatctcagtcttcctcctcatccgaggagaagaccaaacctaccaatcagctg
aagaaacgagaccagcgaaaagaggtggatgatgagaaaaactttagtaaaggtttggag
aaacaatatccttcaaaaagggaggtttcagagcccagtacagccgccattacagaagtg
gaaccagactcggagagctccatggctgagcagccagtctccagtgctgaacctgagaat
agtgagagtcgtctggaagagagtaccactcctaaggcttttgctgctcgcaagatatcc
ataaccagcagcaaggcgtccccagccaccacagatggaggaggaggagagtctgacatt
ggaaatgctgcggggaggaagagacgatggggctccagcactgctgtcaccgttaagaaa
ccttcaatcagcataaccacagactccctgaagtctttgattccagacatcaaagtgaac
caggaggcagttgtggagcttcatccagaggagctgcagttgtcgggggatgaggacaac
atggacaccagtcgggcagacccggataaaggcctcaaaatccgacgcaccgtaacgcag
gttgttccaagtgatagccaggaaaatggccaaacaaatgaagaagaagaagaggaggaa
gaagaagaagaagctgtggagaaaaaggagaaggaaaaagaacaccaggcttccagagac
aaaaggatgaacagtctttctgaagaaacctcagaaacgcagatatctgtaaaccttgac
ggagagaccaagaaagttacctccagcgagggtttagtgcgccgctccataagtcagcag
aagactggtgtgtccgtcacaatcgatgaccccgttcgcacaaccaggcagccctcaccg
cctcgtgggaaaatttcaaatatcatccatgtgaaaaaccttgtaagacccttcactctg
gtccaactgaaggagttgctgaaccggacgggaagtatagtggaagagggtttctggatc
gacaaaataaaatctcactgctacgttacttataccacgacagaggaagcagtcgccacc
agaacagcactccatggagtcaaatggcctcccagtaatcctaaagtccttaatgtagac
ttctgtgagcaggatgagctggatttccacaaaggtgtcctaaagccggaaaaagaggaa
aatctgcccgttccaccgccagaagttcctcagaaccggctgccccctctgatgcccgag
cgtgaccgggaccgagaccgtgaaagggaccgggagcgggagcgagacagggaacgggag
agaggggtgcgggatctgtgggcggagcgccagagggagatggagcgccgggaaagggcg
cggggcgaacgggaatgggaccgggacaagatcagagaattcgcaagaccaggagaggat
ggacgacgatctagatccagagacagggagaggaggagaagagagcgagctaagagcaaa
gagaagaagactgataagaaagagaagggagatgaacctccggccaagatgctggacgac
ttgttcctcaagaccaaagcagctccctgtatatactggcttcccctcactgaggagcag
gcggcgcagaggctcctagaccgcacagaacggcaaaaagagcgcgagcgaaggcgcaaa
gagcgagaggaggaggagctcaagaaacgtgaagaggagaaaaaagagaggctgaagggc
cgggagaaggatggtagcgcggtggcgggtggaacgaccaagcgaggaggcgacggcgac
agagagcgagaccgcgtccgcgaccgagaagaggacaagaggagggacggcagccaccgg
tccagacggccctctccaggtgctggtggcggacggcggtctcatagtcggagcaacccc
agagacagacgccgctga
DBGET
integrated database retrieval system
