Cololabis saira (Pacific saury): 133420152
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Entry
133420152 CDS
T09849
Name
(RefSeq) collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
csai00536
]
133420152
Glycosaminoglycan binding proteins [BR:
csai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133420152
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
133420152
NCBI-ProteinID:
XP_061565731
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All DBs
Position
20:28256064..28430107
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AA seq
669 aa
AA seq
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MEPEAAALKRQPRRTSALNILSSLCSLASFAFCIYLGIDTAHVKSRVVDLESGTAGEHTF
LRDPGYSVEDLRVLVQQRVDELLSQHSYENFVKIRTARQASPECSCPPGPPGKRGRRGRD
GETGPPGPPGPTGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPP
GPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGQPGETGVMGPEGPQGPKGAFGTPGNPGVD
GLKGDVGIPGLDGVPGAKGEMGERGEKGDMGEEGPKGDMGEKGDAGSSAAGIKGEPGEPG
RSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKGERGEIGP
AGPKGSEGEAGTPGNKGSKGETGDAGDLGPVGPRGPPGQKGNQGATEIIDYNGNIQEALQ
KITTITVTGPPGPPGPLGPQGIKGDRGLPGLPGLDGERGYKGSKGDMGMPGASGEKGGTG
LPGLPGVNGMKGDKGDSGLPGPQGPSIIGHPGSAGPHGPPGPMGPHGFPGPKGESGLHGM
KGTRGEPGHKGDRGPLGLPGMDGPPGPSGPAGPKGDIGERGAAGDPGPRGPYGLPGAAGT
PGLDGLPGLKGDKGDLGERGEKGFRGFKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQ
KGVTPWLVA
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atggagccagaagcggcagccctgaagcgacagccccgccgcacctccgcgctcaatatc
ctctcctctctgtgctcactggcgtccttcgccttctgcatttacctgggcatcgacaca
gctcacgtcaagagccgagtcgtggatttggagagtgggacagcaggggagcacaccttt
ctccgtgaccccggctactccgtggaagatttacgtgtcctggtccaacagagagtggac
gagctgctctctcagcactcttatgagaattttgtgaagattcggaccgccagacaagca
tcacctgagtgcagctgccctccaggacctccgggtaagcgaggaagaagaggtcgcgat
ggagaaactggacctcccggtcctccaggtccaacgggtgaaaagggggatcaaggcgac
cagggaccacggatggtcttccctaagatcaatcatggctttctttccgctgaccagcag
ctcataaagcgacggctcattaagggtgatcaaggccaagcaggaccaccggggccaccg
gggccaccgggccctccggggcccaggggccctccaggggacactggaaaggatggaccc
agaggtgtgcccggcctaccaggcgatccaggtcagccaggggaaacaggagtcatggga
cctgaggggccacaagggccaaagggtgctttcgggactcctggcaatccaggtgttgat
ggactgaagggggatgttggtatcccaggactggacggtgtcccaggggccaagggtgaa
atgggagaacgaggtgaaaagggtgatatgggtgaagagggaccgaaaggtgacatggga
gagaagggagatgcaggctcttctgctgcaggcatcaagggcgaacccggagaacctgga
cgaagtgggcataagggagagccaggacttccagggctgcctggactcccagggataaag
ggagagcccggatttctcggccctcagggggaaccagggcttccaggactcccaggaacc
aagggtgagagaggcgaccatggaccaccaggaaagggtgaacggggagaaatcggacct
gctggaccaaagggttcagaaggagaggctggtacgcctggaaataaagggtcaaagggc
gaaacaggagatgcaggagacctgggtccagttggcccaagaggtcctccagggcagaag
ggaaaccagggagccacagaaatcattgactacaatggaaacattcaagaagctttacag
aagattaccactataacagtcacgggtcctcctgggccgcctggaccattaggaccacag
ggaataaagggggatcgcggtttgcctggtctccctggacttgatggagagagaggctac
aaaggctcgaaaggagatatgggaatgcctggggcctcgggggagaagggaggaaccggt
ttaccaggcttaccaggcgtcaatggaatgaaaggagataaaggagattcaggacttcct
ggtcctcaaggtccatctatcataggccacccagggtcagcggggccccatggccctcca
ggaccgatgggaccccatggcttccctggaccaaagggggaatctggtttgcatggtatg
aagggtactagaggggaaccaggacacaaaggcgaccgtggacctttgggtctgcctggc
atggacgggcctcctggtccatctggtccagccgggccaaagggggacataggtgagaga
ggagcagcaggtgacccaggaccacgaggaccgtatggactacctggagctgctggcaca
ccaggcttggatgggttgccaggcttaaagggagataaaggcgaccttggggaaagagga
gaaaagggtttccggggatttaagggtgaaaagggggaaccaggtcagccaggtctggac
gggctggatgccccatgccaattgggtccagatggattaccgatgcctggctgctggcag
aagggagtcaccccatggctggtagcctga
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