KEGG   Cololabis saira (Pacific saury): 133420152
Entry
133420152         CDS       T09849                                 
Name
(RefSeq) collagen alpha-1(XXV) chain
  KO
K24356  collagen type XXV alpha
Organism
csai  Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:csai00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:csai00536]
    133420152
Glycosaminoglycan binding proteins [BR:csai00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133420152
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 133420152
NCBI-ProteinID: XP_061565731
LinkDB
Position
20:28256064..28430107
AA seq 669 aa
MEPEAAALKRQPRRTSALNILSSLCSLASFAFCIYLGIDTAHVKSRVVDLESGTAGEHTF
LRDPGYSVEDLRVLVQQRVDELLSQHSYENFVKIRTARQASPECSCPPGPPGKRGRRGRD
GETGPPGPPGPTGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRLIKGDQGQAGPPGPP
GPPGPPGPRGPPGDTGKDGPRGVPGLPGDPGQPGETGVMGPEGPQGPKGAFGTPGNPGVD
GLKGDVGIPGLDGVPGAKGEMGERGEKGDMGEEGPKGDMGEKGDAGSSAAGIKGEPGEPG
RSGHKGEPGLPGLPGLPGIKGEPGFLGPQGEPGLPGLPGTKGERGDHGPPGKGERGEIGP
AGPKGSEGEAGTPGNKGSKGETGDAGDLGPVGPRGPPGQKGNQGATEIIDYNGNIQEALQ
KITTITVTGPPGPPGPLGPQGIKGDRGLPGLPGLDGERGYKGSKGDMGMPGASGEKGGTG
LPGLPGVNGMKGDKGDSGLPGPQGPSIIGHPGSAGPHGPPGPMGPHGFPGPKGESGLHGM
KGTRGEPGHKGDRGPLGLPGMDGPPGPSGPAGPKGDIGERGAAGDPGPRGPYGLPGAAGT
PGLDGLPGLKGDKGDLGERGEKGFRGFKGEKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQ
KGVTPWLVA
NT seq 2010 nt   +upstreamnt  +downstreamnt
atggagccagaagcggcagccctgaagcgacagccccgccgcacctccgcgctcaatatc
ctctcctctctgtgctcactggcgtccttcgccttctgcatttacctgggcatcgacaca
gctcacgtcaagagccgagtcgtggatttggagagtgggacagcaggggagcacaccttt
ctccgtgaccccggctactccgtggaagatttacgtgtcctggtccaacagagagtggac
gagctgctctctcagcactcttatgagaattttgtgaagattcggaccgccagacaagca
tcacctgagtgcagctgccctccaggacctccgggtaagcgaggaagaagaggtcgcgat
ggagaaactggacctcccggtcctccaggtccaacgggtgaaaagggggatcaaggcgac
cagggaccacggatggtcttccctaagatcaatcatggctttctttccgctgaccagcag
ctcataaagcgacggctcattaagggtgatcaaggccaagcaggaccaccggggccaccg
gggccaccgggccctccggggcccaggggccctccaggggacactggaaaggatggaccc
agaggtgtgcccggcctaccaggcgatccaggtcagccaggggaaacaggagtcatggga
cctgaggggccacaagggccaaagggtgctttcgggactcctggcaatccaggtgttgat
ggactgaagggggatgttggtatcccaggactggacggtgtcccaggggccaagggtgaa
atgggagaacgaggtgaaaagggtgatatgggtgaagagggaccgaaaggtgacatggga
gagaagggagatgcaggctcttctgctgcaggcatcaagggcgaacccggagaacctgga
cgaagtgggcataagggagagccaggacttccagggctgcctggactcccagggataaag
ggagagcccggatttctcggccctcagggggaaccagggcttccaggactcccaggaacc
aagggtgagagaggcgaccatggaccaccaggaaagggtgaacggggagaaatcggacct
gctggaccaaagggttcagaaggagaggctggtacgcctggaaataaagggtcaaagggc
gaaacaggagatgcaggagacctgggtccagttggcccaagaggtcctccagggcagaag
ggaaaccagggagccacagaaatcattgactacaatggaaacattcaagaagctttacag
aagattaccactataacagtcacgggtcctcctgggccgcctggaccattaggaccacag
ggaataaagggggatcgcggtttgcctggtctccctggacttgatggagagagaggctac
aaaggctcgaaaggagatatgggaatgcctggggcctcgggggagaagggaggaaccggt
ttaccaggcttaccaggcgtcaatggaatgaaaggagataaaggagattcaggacttcct
ggtcctcaaggtccatctatcataggccacccagggtcagcggggccccatggccctcca
ggaccgatgggaccccatggcttccctggaccaaagggggaatctggtttgcatggtatg
aagggtactagaggggaaccaggacacaaaggcgaccgtggacctttgggtctgcctggc
atggacgggcctcctggtccatctggtccagccgggccaaagggggacataggtgagaga
ggagcagcaggtgacccaggaccacgaggaccgtatggactacctggagctgctggcaca
ccaggcttggatgggttgccaggcttaaagggagataaaggcgaccttggggaaagagga
gaaaagggtttccggggatttaagggtgaaaagggggaaccaggtcagccaggtctggac
gggctggatgccccatgccaattgggtccagatggattaccgatgcctggctgctggcag
aagggagtcaccccatggctggtagcctga

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