Cololabis saira (Pacific saury): 133420215
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Entry
133420215 CDS
T09849
Name
(RefSeq) protocadherin-20
KO
K16498
protocadherin delta 1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
133420215
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
csai01009
]
133420215
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
csai04515
]
133420215
Protein phosphatases and associated proteins [BR:
csai01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
133420215
Cell adhesion molecules [BR:
csai04515
]
Cadherins
Protocadherins
133420215
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
133420215
NCBI-ProteinID:
XP_061565813
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Position
2:24055290..24059446
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AA seq
890 aa
AA seq
DB search
MSNSRHPSLSKRGKTWGFCILLLYTTPLSCLANFSQAKELIYKIKEGLPKGTFIGAIGVD
LHLNFTVEPPFVFSLTQKKVSGQYVKLNNTTGELYTSAKEIDRETLCHDGSERQGCILSL
DVFVLPQQYFQLVKVKIVIEDVNDNRPKFPTDKIVMFIPENTPINARYPVEQSAVDPDLG
VHGVQTYWLVNDFGVFALDVEENEGGELTPFLIVTEDLDRETQDEYITDIIAEDGGTPPL
LGAATLKIVITDVNDNCPQFTESQINVTVRGNTTKGAHLGRLHAFDPDLGSNAQISYAYS
ERVPTNTKSLFHLDKTTGVIKLAGRIDTSTATFYKLTVLAHGPGCIPAVAAVTIHIIKVF
TGPPAVIPRYIASEKDGVVTIKESEPVFSPIAFFTVKNIDVNQRVDCHLEGFGPFRLVPY
QLFKNEYLLETTEPLDYEKTQDYELIVVANNSRGLVIKTFLKIQVLDDNDNAPVFQQPLV
EISIEENNPPNTFLTQLQATDQDSEGRGEVIYLLGGDAPFEIFVVDRVTGVLTVATSLDR
EEKEKYRFIVRALDQGTPRRESIATIVVTVLDRNDNCPRFINKDFTFFVPENFPGYGEIG
VLSVMDADAGENGWVALSILNGSDIFIIDTGRGALRARTSLDREQQGTYHLWIEAVDGGE
PALSSVTMVTVLLLDVNDNPPIVLFPQSNQSYMLVLPNTVPGTSITEVYAVDKDTGMNAV
IAYSIIKRKGGEPGSFDIDPETGNITLKRELSNRGLYSLLVKVSDHGQPEPLYATVMVNF
FVNETVSNESYIQSLLTREADIEVEEKPWYVGQMTDGPERYELFPCRPVLIALSVTCLGL
FFMVVTLTSYICWKKFKKIRKKRSDVEIPLKIKTDSGHHVNRKLRQVSNI
NT seq
2673 nt
NT seq
+upstream
nt +downstream
nt
atgtccaacagcagacaccccagccttagcaaaagagggaaaacatggggattctgcatc
ctcttactatacaccacccccctttcctgtttggcaaatttcagtcaagcaaaagagctc
atctataagataaaggagggattacccaaagggacttttataggggctattggagtagac
ctacatttaaatttcacagttgagcccccctttgttttcagtctcacacaaaagaaggtc
agtggtcagtatgtgaagctaaataataccaccggggagctctacacatctgctaaagag
attgacagggagactctctgccacgatggctctgagagacaaggttgcatcctctctctg
gatgtgtttgtgttgcctcagcaatactttcagctcgtcaaagttaagatcgtaatagag
gatgtgaatgacaacaggccaaagtttcccacggataagattgttatgttcatcccagaa
aacacaccaatcaatgctcgctacccagtggagcagtctgcagtcgatccagacttgggt
gtccatggagtacagacctactggctagttaatgattttggtgtgttcgcattggatgtt
gaggagaatgagggaggagagctgacacccttcctcattgtgacagaagatttggacaga
gagacgcaggatgaatatatcacagatatcattgctgaggatggagggacccctccactt
cttggtgcagctactttaaaaattgtcatcacggatgtaaatgataactgccctcaattc
acggagtcacaaattaatgtcacagtgcgcgggaatactaccaaaggggcacatttggga
cgtctccatgcttttgacccggaccttggttctaatgctcagatcagctatgcttacagt
gaacgtgtgccaacaaacaccaagagtttgttccatttggacaaaaccacaggagtgatc
aagctagctgggagaatagacactagcacagccacattttacaaactcactgttttggca
catggacctggctgtatccctgctgttgctgctgttaccatccatattatcaaagtgttt
actggaccacctgcagtcatacctcggtacattgcatcagaaaaggatggagtggtgaca
ataaaggagtctgagccagttttctctccaattgctttttttactgtcaaaaacattgat
gtgaaccaaagggtggactgccatttggaagggtttggtcctttcaggcttgtgccctat
cagctgttcaagaatgaatacctactagaaactacagagcccttggactacgagaaaaca
caggattatgagctaatagttgttgctaataattctcgaggccttgtcatcaagactttc
ctcaaaatacaggttttggatgataatgacaacgcaccagtgtttcagcaacctctggtg
gaaatatcaattgaggaaaacaacccacccaacacctttttaacccagctccaagccaca
gaccaggacagtgaaggtcgaggagaagtcatttacctccttggaggtgatgcccctttt
gagatttttgttgtggatcgtgttacgggcgtactgactgttgccacatctcttgatcgt
gaggaaaaagagaaataccggttcatcgtgagagcattggatcaggggacaccccggagg
gagtccattgcaaccatagtggtgactgtgctagatcgcaatgacaactgtccacgtttt
atcaataaggacttcactttctttgtgcctgagaacttccctgggtatggtgagattggt
gtcctctctgtcatggatgctgatgccggagaaaatggctgggtggctctatccatcctc
aacgggagtgacatcttcataatagatacaggccgaggggcactgagggcgaggacatca
ttggaccgtgagcaacaagggacctaccatctgtggattgaagctgttgatggaggggag
cctgcactctcctctgttactatggtgaccgttctattgctggatgtaaatgataaccca
cctattgtcctcttccctcagtccaatcagtcatacatgctggtgctacccaacacagta
cctggaacatcaatcactgaggtgtatgcagtggataaagatacaggcatgaatgccgtg
attgcctatagtatcattaagaggaagggcggtgaaccagggtcatttgacatcgaccca
gaaacaggaaatatcacactaaagagggagctcagcaacagggggctctacagcctcctg
gtgaaggtcagcgatcacggccaacctgaaccactttacgcaacagtcatggttaacttc
tttgtcaatgaaacagtgagtaatgaaagttacatccaaagtctgctgaccagagaggcg
gacatagaggtggaggagaagccctggtacgttgggcagatgacagatgggcctgagagg
tatgagctgttcccctgtcggcctgtcctcattgctctttcagtgacttgtctgggtctc
ttctttatggttgtcacactgacatcctacatatgctggaagaagtttaaaaagatcaga
aaaaaaagatcagacgtggaaatacctttgaagataaaaacagactcagggcaccatgtg
aacagaaagctcaggcaggtctcaaacatctga
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