Cololabis saira (Pacific saury): 133420731
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Entry
133420731 CDS
T09849
Symbol
pkd1l2a
Name
(RefSeq) polycystin-1-like protein 2 isoform X1
KO
K04988
polycystin 1L2
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133420731 (pkd1l2a)
04091 Lectins [BR:
csai04091
]
133420731 (pkd1l2a)
Ion channels [BR:
csai04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133420731 (pkd1l2a)
Lectins [BR:
csai04091
]
C-Type lectins
Others
133420731 (pkd1l2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Polycystin_dom
PKD_channel
PLAT
Lectin_C
Ion_trans
SUEL_Lectin
GPS
REJ
Motif
Other DBs
NCBI-GeneID:
133420731
NCBI-ProteinID:
XP_061566502
LinkDB
All DBs
Position
2:30817848..30835540
Genome browser
AA seq
2474 aa
AA seq
DB search
MALLLSVNCYAEEDAEDSSCLDHQKAFDGACYEFVGLHLSFLRAQAWCERGGGHLAFILN
DETQQFLQQHLDPEKDWWLGLGPAGSNLTLDPAATEGSLAWLDGSDVSYSNWVNQPETET
ACGHILRHAGFQWKATANCSQELSFICQFESGRTIACEGRNATLQCGSGQVIEVEDGFYG
RKTIHYCRSKLTDAPTFSQEECSWINVVDSVTAHCRGLQACQTAVDLNVFSEPCAVLGSY
LYVEYGCKDGLHLLMSKVASVFDNITITVKWVLNPFQGNLTCTVNAGDGHVIDPYSPKET
ESSIIHSFRRPGVFVVVVECSTSDWHVAAQKTITIQEPVGELSAIKCYSKNAATDGAKCN
TLHGEPVDIELKVEAGTNVSYTIHHEAHLIANSSVDLGVTPYNLTLNASVIQRLGQGCHN
LTIAASNRVTSQAVSTPLMLCLLEPVKDLQASLIEEPGVCPDSIDLLIGVSLQQGTPVEL
LFNLTGASDTLTETRHMLNDSMLTYTFSNPLEGLLAVKVQAMNAISTSDVDVDLGEVLQV
CQKYSRSSPVQDRNTTGNIGVDESTDLKIMASPAAVVDHTQSITLTVTGTELLPSKALAY
EWKCKGNCTCRDITKGETHIIEKDCLPSPFEMFKYTLIVRKRIWFRKWVDIASASKCITV
APSNEFPDVTISCDNCASVNVSDHVNLRLRCETTCPDVVWFIEDPRPSTGDLNECYSEAG
RRPPIEKQGGNTEYTVYSQHLKASRRTSRNISVIAYGKTVPGFVKFTLPVPGPDPEVAMD
VPAVPSCSISPPSGTVLDAFNITCTESSFCSAGCLYCFKTNTGKHLRCSNANDVKSVFLP
LGDENNNNILSMVVTVKNENATTTTTLAAQVWKTNFSASVTTLQSAVEETVGQLEQQGLL
SGEALGQIFSSVSDVLNSEAGQDQKDARSKLREHMLTKMTGVLLDSPSNSTQEVQMMARA
VAGLTQISDELSAVAQEEAGSLLVDLSSSLKTISVNLPSSEDEVVQAATPIIESASNILN
VSSNKKVSDSLLTGINNIQSALLNNKELNGQPAIIDSGQISVYVNRISPNAMQTRDINVL
KNSSSRFSFPSLPAGIISAEEEVDVRMMSFEKNPYSWKEENITGTVGSLSLTRVNGTVIP
VENLPEEIEILLPRLDVKHEISTVLDLANFSTLILDVPSPDVTLVLKMEPSDDISFMLFL
GYKDYPNDQSYVAKTRMPLENAKEDEKFTWVLSPKERTPDVGVHYLVMKPIAEPGVKSVN
ATVAVISIAAQCKYWNETESSWSEDGCRVGPLTTPFVTQCLCNHLTLFGSSFFVMPNLVD
VSRTAELFATFTNNPVVVCFVGAIFAVYLLVVIWARRKDIQDATKVKITVLEDNDPLAEY
RYMLNVSTGHRHGASTSSQVAVTLLGTEGESEPHHLTDPEKPVFERGGVDMFLMTTHFSL
GDLQSIRLWHDNSGEHPAWYVNKVMVQDLETGQKWHFLCNSWLAVDVAECALDKVFPVAT
ETDLKRFSNLFFMKTAKDFRDGHIWFSVISRPPCSTFTRVQRVSCCFSLLLCTMLTSIMF
WGIPTDPSEQTMDLGHIEFTWQQVMIGIQSSIIMFPINLLIVSIFRNTRPREKTAKADTS
KQGNTVKVSPSQTPSPLKEIKDITPDTVIKDIKRIAKSLSKAMKSPLPHLELRPDQQADI
NTLLSLVEDIIRQQNQMAGNFYTDTCKRDPAMILSLGAVNLRENSMWGSPEKTTDELQKK
SNNSKYLYRQLHLVEKELGLLGPSHFPNPDNYKRAMLQVQGMKSHLEFQQPSSSLDGDQL
NRSPSPEESVDGSANKKCCQRGLPWWFVFIGWTLVIATSVVSGYFTMMYGLTYGKDRSIS
WLISMLVSFFESLFITQPLKVLGFAAFFALVLKKIDQEEFGEPQIDENFRNTDDPDVVPV
ARRDSTCSFYQPPPPTDIERMRGNMIKEQKVFALIREILAYIGFMWVLLLVAYGQRDPNA
YFLTQHIRQSFSRGISDSMSVQDVFNWANTTLLSSLFGEHPGFITDGNSKLVGNARLRQV
RVQKNSCRVAGSMQQSVPECHAPYSWEVEDMGSYGPGWSRPVSGNTSLNSHSPWKYHSQR
NLRTFPIWGSVRLYRGGGFVMALGPDLQNSSRILQYLYDNTWLDVYTQAVFVEFTVYNAN
VNLFCIVTLMLETTATGAFQFRSELQNVRLYQSTGGLHIFVMASEVVYFLFIIYYMFTQG
KVMRREKIAYFKSKWNLLELAIIILSWSALSVFIKRTLLGNRDISHYQNNKKQFASFHET
AQADAVLGYLIAFLVLLATVKLWHLLRLNPKLHMITATLQRAWTDISGFLVVMTIMFLAY
SVASNLMYGWKLYSYRTLLDAAQTIVSLQLGIFNYDEVLNYNPVLGALLIGSCIVFMTFV
VLNLFISVILVAFSEEQIHHKPSEEEEIVDLMVMKLCSLFGIKCKKQCLTERPDVSSLSN
NKISTISTGNIHEG
NT seq
7425 nt
NT seq
+upstream
nt +downstream
nt
atggctctcctcctcagcgtgaactgttatgctgaggaggatgcagaggattcatcctgt
ctggatcaccagaaggcctttgacggtgcttgctatgaatttgttggtcttcatttatcc
tttctcagagcccaggcgtggtgtgagcgaggaggaggacacctagccttcatcctgaat
gatgaaacacagcagttccttcagcagcacctggacccggagaaggactggtggcttggg
ctgggacccgcgggttcaaatctgacgttggatcccgctgcaactgaaggctctcttgca
tggttggatggctcagatgtcagctatagtaactgggtaaaccagccagaaacagagaca
gcctgcgggcatattctgagacatgcgggcttccagtggaaagccacagcaaactgcagc
caggaattaagtttcatttgccagtttgagtctggaaggacaattgcatgcgaaggtcga
aatgccactctgcagtgtggttctgggcaagttatagaggttgaagatggcttctatggg
cgaaaaactattcattactgccgatcaaaacttacagacgcacccacattctcccaggag
gagtgcagctggataaatgtggtggattctgtaacagctcattgccgtggactgcaggcg
tgccagactgcagtggatctgaacgtgttcagtgaaccttgtgctgtgctgggaagttac
ctttatgtagagtatggctgcaaggatggacttcacttattgatgagtaaagtggcatct
gtctttgataatatcaccatcactgtgaagtgggtactgaatccatttcaggggaaccta
acctgcacagtgaatgctggagatggtcacgttattgatccatacagcccaaaggagaca
gaaagcagtattatacacagtttccgccggcctggtgtttttgtggtcgtcgtggagtgc
tctaccagtgactggcatgttgctgcgcagaaaacaataactatccaggagcctgttgga
gagttaagtgcgatcaagtgctacagcaagaatgcggcaacagatggcgctaaatgcaac
acacttcatggcgagcctgttgacattgagcttaaagtggaggcaggtacaaatgtttcc
tacacgattcatcatgaagcccatttgattgccaactcgtcagtggacctgggggtcaca
ccctacaacctcacactgaatgcaagtgtgattcagaggcttggacagggctgccacaat
ttaaccatagcagcatctaacagagtcacaagccaagcagtgtccactcctctgatgctg
tgtttgctggagcctgttaaggacctgcaggcgtctttgatagaagagccaggcgtgtgt
ccagactccatcgatctcctcatcggtgtctcattgcagcaaggaacaccggtggagttg
ctctttaatctcactggggcgagtgatacactgactgagaccagacacatgctcaatgac
agcatgcttacttatacattctctaacccactcgaaggactcttagctgtgaaagtccaa
gctatgaatgccatttccacttctgatgtagacgtggacttaggggaggtacttcaggtt
tgccagaaatattctcgctcgtcaccagtccaggacagaaatacgacaggtaacattgga
gtggatgagtcgactgacttgaaaataatggcttctcctgccgccgtggttgaccacact
cagagcatcacactgacagtaactggaaccgagttgttacccagcaaagctctcgcatat
gaatggaaatgtaaaggaaactgcacatgcagagacataacaaagggtgaaactcacatt
atagaaaaagattgcctcccgagcccatttgaaatgttcaaatacaccttaattgtaagg
aaaagaatatggtttaggaaatgggtggacattgcttcagcttcaaagtgcatcactgtt
gctccttcaaatgaatttccagatgttacaatcagttgtgataattgtgcttccgtgaat
gtgtctgaccacgtaaatctaagactcaggtgtgagacaacttgtccagatgttgtttgg
ttcatagaagaccccagaccttcgacaggtgaccttaatgaatgttactcagaagcagga
agaaggccacctattgagaagcagggtggcaacactgaatatactgtttacagccaacat
ctaaaagcttcaaggaggacttctcgcaacatcagcgtgattgcttatggcaagacagtg
cctggttttgtcaaattcactcttccagtgccaggtcctgaccctgaagtggcaatggat
gtacctgcagtcccttcatgtagcatctctccaccttcaggaactgtacttgatgctttc
aatattacctgcacggagagctctttctgctctgcaggctgcctttattgctttaagacc
aacacaggcaaacatctgcggtgcagtaatgcaaatgacgtgaaatcagtctttttgcct
ttgggtgacgagaataataataacattttgtccatggtggtgactgtaaaaaatgaaaat
gcaacaactactacgactcttgcagctcaggtatggaaaactaacttcagtgcctccgta
acgactctgcagtctgcggtggaggaaactgtgggtcagttagagcagcaaggcctcctc
tctggtgaggcactcggacaaatattctcttcagtctctgacgtgctgaattcagaggct
ggccaagatcagaaagatgcaaggtcgaagctcagagaacacatgttgaccaaaatgacg
ggagtccttcttgacagccccagcaactcaactcaagaagtgcaaatgatggccagagct
gtagctggactcacgcagatctcagatgagctcagcgcagttgctcaagaagaagctggt
tcattgttggtagacctcagttcctccctcaagactatcagtgtcaatctgcccagcagc
gaggatgaagttgtgcaagcagctacacccataatagaatcagctagtaatattttgaac
gtttcatcaaataaaaaagtctcagattctcttctgactgggataaacaacatccagagc
gctttgctgaataataaagagctgaatggacagcctgccatcattgactctggtcagatt
agtgtgtacgttaacagaatatctccaaacgcaatgcaaacacgggatataaatgtcctg
aagaacagctcttccagattttccttcccttcactgcctgctggcatcatctctgcagag
gaggaagtggatgtcagaatgatgagttttgagaagaatccatactcttggaaggaggaa
aacatcacgggaactgtgggatctctttctctcacaagagtgaacggcacagtcatacct
gttgagaacttacctgaagagatagagattctcctaccaaggcttgatgttaagcatgag
atcagcacagtgctcgacctcgccaatttcagcactttgatacttgatgtgccatcgccg
gatgtgacgctggtgctgaaaatggagccgtctgacgacatttccttcatgttgttcttg
ggatataaagattatccaaatgatcagagctacgtagcaaaaaccaggatgcctctagag
aatgcaaaagaagatgaaaagtttacctgggtactgagtcccaaagagcggacaccagat
gtcggcgtgcactaccttgttatgaagccaatagcagagcctggtgtcaagtctgtgaac
gccactgttgccgtcatttccattgccgctcagtgtaaatactggaatgaaaccgagtcc
tcctggagtgaagacggctgcagggtcggcccgctcaccacaccttttgtaactcagtgc
ctttgtaatcacttaactttatttggcagctctttctttgtcatgccaaacctggtggac
gtctcacgcacggctgaactttttgcaacattcactaacaatcctgtggtcgtatgtttt
gtgggggccatttttgctgtttatctgctggtggtcatatgggcacgtaggaaagacatc
caggatgcgaccaaggtcaagataacagttcttgaggacaatgaccctttggccgagtat
cgctacatgctgaatgttagcacaggacaccggcatggagcatctacctcctctcaggtg
gccgtaactctgctgggaacagaaggagagagcgagccccatcacttgacagaccctgaa
aagcctgtgtttgagcggggtggagtggacatgtttctgatgaccacacacttttctctt
ggagacctccagagcataagactgtggcacgataattcaggggaacaccctgcgtggtat
gtcaataaagtgatggtgcaagatctggaaactggtcagaaatggcacttcctgtgtaat
tcctggctggctgtagatgtggctgagtgcgctcttgataaggtcttcccagtagcgaca
gagacagatttgaagagatttagtaacctgttcttcatgaagacagccaaggacttccga
gacggccacatctggttctctgtcattagtcgtcctccatgcagcacttttacacgtgtg
caacgagtgtcctgctgtttctcccttttgctgtgcaccatgctgaccagtattatgttt
tggggcatccccacagacccctctgagcagaccatggacctgggtcacatcgagttcacc
tggcagcaggttatgatcggaattcaaagttcaattatcatgtttcccatcaatctcctt
atcgtgagcatcttcaggaacacccgtcctcgagagaaaactgccaaagctgacacatcg
aaacaagggaacactgtcaaagtttctccctcacagactccctctcctctgaaagagatc
aaggacatcactccagacactgtgatcaaggacataaagagaattgctaagtccctctca
aaagcaatgaagagtccactgccgcatctggagctccgtcctgaccagcaggccgatatc
aacaccctgctgtctctggtggaagacatcatcagacagcagaaccagatggctggaaac
ttctacactgacacctgcaagagagatcctgccatgatcctcagtttaggtgcagtaaat
ctgcgagaaaacagtatgtggggaagccctgagaagacaacagatgaattgcagaagaag
agcaacaacagcaagtacttgtacagacagctccatctggtagagaaggagcttgggctg
ttgggaccttctcactttccaaacccagacaactacaagagagccatgctgcaagttcag
ggaatgaagagtcacctggagttccagcagccctcatccagcctggatggagaccagctc
aatcgcagccccagtccagaggagagcgtagatggcagtgctaacaagaagtgctgccaa
agagggctgccgtggtggtttgtgttcattgggtggacattagtaattgcaaccagtgtt
gtctcgggatacttcactatgatgtatgggctcacttatgggaaagaccgctccataagc
tggctcatctccatgctggtctcgttttttgagagcctcttcatcactcaaccgctcaag
gtacttggttttgcagctttttttgctctcgttttgaaaaaaatcgatcaggaagaattt
ggagagcctcagatagatgagaacttcagaaatacagatgatcctgatgtggtgccggta
gccagaagagatagcacatgtagcttctatcaaccaccacctcctactgacattgagagg
atgcggggcaacatgattaaagagcagaaggtctttgccctcatcagggagattcttgct
tacattggattcatgtgggtgttgctcctggtggcatatggtcagagggacccgaatgct
tatttcctcacccaacacattcgacaaagcttcagcagaggcatctcagacagtatgagt
gttcaggatgtgttcaactgggcaaacacaactctcctgagcagcctgttcggagagcac
ccaggatttatcaccgatggaaactcaaagttggtaggtaacgcccgtctgcggcaggtg
agggtgcagaaaaactcctgccgtgttgcggggtccatgcagcagtctgtgccggagtgt
cacgctccgtactcgtgggaagtggaggacatgggctcctacggtccagggtggagtcgc
cctgtgagtggaaacacctctctgaactctcacagcccgtggaagtaccactctcagcga
aacctgagaactttccccatctggggaagtgtgaggctctacagaggaggcgggtttgtg
atggctcttggaccggatttgcaaaactccagccgaatcctgcagtacctttatgacaac
acctggctagatgtttacacccaagcagtctttgttgagttcactgtatacaatgccaac
gtgaacctgttctgcattgtcacactcatgctggagaccacggccacaggagctttccag
tttcgcagtgagcttcagaatgtgcgtctgtaccagtcgaccggtggcctccacatcttt
gtcatggcgtctgaagttgtttacttcctctttatcatctactacatgtttacccaggga
aaggtgatgaggagagagaaaattgcttatttcaagagtaagtggaatctgcttgagctg
gcgataatcattctcagctggagcgcactctctgtcttcatcaagaggactttattgggg
aacagggacataagccattatcagaacaacaaaaaacaatttgccagtttccatgagaca
gcccaggctgatgcagtgctcgggtatctgattgcctttctggtactgctggctacagtc
aagctgtggcacctgctgagactgaaccccaagctgcacatgatcacggccacactgcag
cgagcttggactgatatttcaggcttcctggtggtcatgaccatcatgtttctggcctac
tctgttgcttctaacctgatgtatggctggaagctgtactcctatcgaactctgcttgat
gctgcacaaaccatagtcagcttgcagcttggcatatttaactacgatgaggttctgaac
tataatccggtccttggggccctccttattggctcctgcattgtgttcatgacctttgtg
gtgctaaacctcttcatctctgtcattctcgtggctttcagtgaagagcagatacatcac
aagccatccgaagaggaggagattgtggacttgatggtgatgaagctctgcagtttgttt
gggatcaaatgtaagaaacaatgtttaactgagcgaccagatgtttcatctctttcaaat
aacaaaatctcaacaatttctactgggaacattcatgagggataa
DBGET
integrated database retrieval system
