Cololabis saira (Pacific saury): 133420744
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Entry
133420744 CDS
T09849
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04382
Cornified envelope formation
csai04510
Focal adhesion
csai04512
ECM-receptor interaction
csai04518
Integrin signaling
csai04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
133420744 (col4a6)
04518 Integrin signaling
133420744 (col4a6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
133420744 (col4a6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
133420744 (col4a6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
133420744 (col4a6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
csai04147
]
133420744 (col4a6)
00536 Glycosaminoglycan binding proteins [BR:
csai00536
]
133420744 (col4a6)
Exosome [BR:
csai04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
133420744 (col4a6)
Glycosaminoglycan binding proteins [BR:
csai00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
133420744 (col4a6)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
133420744
NCBI-ProteinID:
XP_061566514
LinkDB
All DBs
Position
20:18910927..19026234
Genome browser
AA seq
1716 aa
AA seq
DB search
MKLIFCAVALILLVGSSHGGFDSDEPCAGEDCSRGCKCNPEKGSRGRPGPLGPVGPSGPE
GTRGDLGPKGPKGEKGHIGLKGPSGDNGDKGPMGVPGFQGTDGVPGHPGQPGGRGLPGLD
GCNGTRGEPGPVGYGTGSPGSPGITGLSGRPGVKGQKGEPRYVSLDGSGSYPGIRGPAGP
AGFVGPIGPIGNPGPRGPDGYPGSPGPPGPPGLMGSRSDGYLGEKGDKGDVGLPGDPGQP
MINGIGEFVGYRKGDKGLQGDPGLKGYRGNDGTPGRPGPFGYPGEFGEKGIPGYPGARGP
PGFNGPPGSEGQQGFRGDAGYSGQPGYQGPKGDQGEPGPPGPPVYVNGQGVSGRGPPGDY
GRSGVPGVRGDQGSPGYPGPPGEPGGFGGGYGGGYGGLPGFPGTPGPPGEKGSPGAPSYG
PEGQSGSPGPPGPPGPPGPQGPSRYSNDPCKIYPLDPTAGPGPGSGSSSPGLPGLPGSRG
ETGYSGGRGFRGDPGDCNCLGGGSSGYPGGRGGPGANGSPGFAGRKGETGDPGSLGLSGV
QGARGGAGPRGGFGRKGEKGEAYYPYSFSVKGERGNTGLRGAAGEPGKQGRDGLPGFPGN
LGPPGDGGYGTGGEKGFQGFPGSKGAAGQVGESGRGFTGTPGFRGEAGDPGVPGLPGQPG
LPGPRGENSCGGVNDAGEGTGTVLPCTIPGEAGDPGYPGLPGGPGPKGHSGAPGGSGRPG
FDGAKGERGDVGFGGQPGPQGFPGPRGDPGGPGIPGRSFDGGRGKDGIPGRPGPKGQVGD
TLGATPGAPGRDGAPGLPGDKGEPGTNGGPGGPGLDGRIGAPGRRGERGVDGVNGIPGPP
GPPGDPASSFPGRPGAAGIKGLSGSPGFPGRKGDRGDPGYTGREGIKGTQGLPGTPGGPG
SRGLPGPPGSGTRDGIPGIPGRKGEQGFSGVMGFPGLPGRPGSPGFPGGKGLPGGPGGEG
RPGGFGSPGQKGEYGLPGLPGLPGIPQQVGRVEKGDPGDPGSSGFPGFTGPRGDRGSPGS
PGRQGQPGYTPFSEQSKGQPGPPGYAGRPGSPGFPGSKGERGIMGFPGITGPRGDDGGPG
YPGNPGEPGRPGGKGPPGEAYTYPGAPGPKGQAGDPGFSAGGGLDGAPGDPGFPGGPGFP
GAKGAIGEGGRPGASGGPGFPGAKGLPGFPGRQGTDGGPGFPGGPGGPGAKGLPGPSGLD
GLNGLGGPKGLPGTPGGNAGGRPGVNGAFGLKGERGVSYPGGPGFPGQKGERGNPGASGL
QGAPGLPGLPGTSVGSLIPGPVGDPGLPGLDGEYGFQGPPGAAGPPGLGTAPGDRGDSGL
PGFPGSPGPKGDLGFSGGPGGPGGPGFKGARGETGYSGSPGLKGFIGDPGYYGGKGPKGF
RGRPGQKGQPGVLLPTRFERVNQPGDPGLPGRSGSPGFPGGAGQPGLPGRPGEKGRPGNV
GSLGRTGGPGLDGTNGEVGPPGFPGPTGDQGQPGTVGQPGIPGGAGRSSSLGYTLVKHSQ
GSDVPMCPQGMDKLWDGYSLLYVEGQEKAHNQDLGTPGSCLPRFSTIPFLYCSPNEICYY
ASRNDKSYWLSTTAPIPMMPVNTEQIRPYISRCSVCEAPSQAVAVHSQDLTIPTCPPGWR
SLWIGYSFLMHTAAGKEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLT
TVEPREEFLYSPNMETLKGGQERSKVSRCQVCSRFL
NT seq
5151 nt
NT seq
+upstream
nt +downstream
nt
atgaagctcatattttgcgcggtggcactcatccttttggtgggatcttcgcacggaggc
ttcgactctgacgagccatgcgcaggcgaggactgcagcagagggtgcaagtgcaaccca
gagaaaggcagccggggtcgtccggggcctctcgggccagtcgggccaagtggaccagaa
gggacacgtggggacctgggacctaaagggcctaaaggggaaaagggacacattgggctt
aaaggaccatctggggacaatggagacaaaggcccaatgggagtgccaggatttcaagga
actgatggagttcctggtcacccaggtcagccggggggtagaggattacccggtctggac
ggctgtaacgggaccagaggagagcctggaccggtcggctatgggacgggatcacctgga
tcacctggaatcactggactctctggaagacctggggtgaagggtcagaaaggagaacct
cgatacgtctcgttggatggctcagggagttacccaggcattcgggggcccgccggtcca
gctggcttcgtaggtccgattggtccaattggtaatcctggcccgagaggacctgacgga
taccctggttcacccggtcctcccggtcccccagggctgatggggagccgtagtgacgga
tatctaggagagaaaggagacaagggcgatgtgggcttgcccggtgaccctggtcagcca
atgatcaatggcattggggagtttgtgggttatcgcaaaggagacaaaggattgcagggg
gaccctggcctgaagggctacaggggaaatgatgggacccctggacgacctggacctttt
ggctatcctggggaatttggagagaaaggcattcccggataccccggtgcaagaggtcct
ccgggttttaatggacctcccggctctgaggggcagcaggggtttagaggtgacgcaggt
tactcaggccaaccaggataccaaggacccaagggagaccaaggagaaccgggtcctcca
ggacctccagtctatgtgaacggccaaggcgtttccggtagagggcctccaggtgactac
ggccgcagtggcgttccaggtgtccgtggtgaccaaggatctccgggataccctggacct
ccaggcgaaccaggcggttttggcggaggatatggaggaggatatggaggactcccaggt
tttcccgggacccccggcccgccgggagagaagggttctccaggtgctccaagctatggc
cctgaaggacaatcaggttctcctggaccacccggaccccctggccctcctggacctcag
ggcccgtcaaggtattccaatgatccctgcaagatctatcctctggaccccacagctggt
cccggtcccggttccggctccagtagccctggactacccgggcttcctggctccagagga
gaaacaggttacagcggaggcagaggctttagaggcgaccctggcgactgtaactgttta
gggggaggctcttccgggtatcctggcgggcgtggaggtccaggtgccaacgggagccct
ggcttcgcgggacggaagggggaaactggtgacccgggttcacttggtttgagtggcgtc
cagggagccaggggtggagctggtcctaggggcggttttggtcgtaagggagaaaagggg
gaagcgtattacccctactctttctcggtgaaaggagagcgtggaaatactggactaagg
ggggcggcaggtgaaccaggaaaacagggcagagatggactgcctgggttccccggaaac
ctaggaccccctggtgatggcggctatggcacgggtggagagaaaggattccaaggcttc
ccagggtctaaaggtgctgccggacaggtcggcgagtccggcaggggtttcacaggaacc
ccaggcttccgtggagaggctggagatccaggtgtccctggattaccagggcagccgggt
ctacctgggccaagaggtgaaaacagctgtggaggggttaatgacgccggagagggaacg
ggcacagtactgccgtgtaccatccccggtgaggctggagaccccggttatcctggttta
cctggaggaccaggcccgaaaggccactcgggcgcacctggaggctctggccgcccaggg
tttgatggtgccaaaggagagaggggagatgtcggttttggaggccaacctggaccgcaa
ggttttcctggacccagaggagacccgggtggtccaggaattccaggacggagttttgat
ggaggcagggggaaggacggcattccagggcgccctggacccaaaggccaggttggggac
actcttggagccacacctggagctccaggacgggacggtgcacctggactgcctggagac
aaaggcgagcctggaactaatggtggacccggaggccctggtttggacggccgcatcggt
gctcctggacggaggggcgagcgcggagttgacggtgtcaatggtattcccggtcctccc
ggaccaccaggtgacccggcctcaagctttcctggtcggcctggagctgctggcatcaaa
ggactgagcggatccccagggttccctggacgaaagggagacagaggagatccaggttac
accgggcgagaaggtatcaagggaacccaaggacttccaggcactcctggaggaccaggg
tcaaggggactccccggacccccaggatcaggaaccagagacggaatcccgggaatacca
ggaagaaagggtgaacaaggcttttcaggagtgatgggtttccctggactaccaggtcgc
cctggatctccaggcttccctggaggaaaaggattgcccggaggacccgggggagaagga
agacctggcggttttggatcacctggacaaaaaggcgaatacggactgcctggtctaccc
ggcttgcctggaattccgcaacaggttggaagagtggagaaaggagaccctggagaccct
gggtcctcaggtttcccgggcttcactggacccagaggggacaggggttcgcctggttca
cctggtcgccaggggcagccgggatacactcctttcagtgaacagagcaaaggacagccc
ggcccgcccggatatgcaggacgtcccggatccccaggctttcctgggtcaaagggggaa
agaggaatcatgggattccctggcataacaggaccaaggggggatgatggtggccctggg
taccctggcaaccctggagaacctggtcgtcctggtggaaaaggtccacctggcgaagct
tacacttatcccggagctccagggcctaaaggccaagcaggagatccaggcttctcagct
ggtggaggacttgacggtgcccccggtgaccccggcttcccaggggggccaggtttccct
ggtgcaaaaggtgctatcggtgagggaggacggcccggagcatcaggcggtcctggtttc
cctggggcaaaaggcctgcctggattcccaggaagacaaggaacagatggtggtcctggt
ttccctggaggtccaggaggtccgggggcgaaaggtttgcctggaccatctggtctggat
ggactcaacggccttggtggacctaaaggtctcccaggaaccccaggggggaacgcagga
ggtcgccctggtgtcaatggtgcttttggattgaagggagagagaggtgtgtcctaccct
ggaggcccaggctttcctggacaaaaaggagagagaggaaaccccggtgcttctggactc
caaggtgcccctggcctgccaggacttccaggaacatcagtaggatcactcatccctgga
cctgtgggagaccccggcctccctggactggatggagaatacggtttccagggtcctcca
ggtgccgctgggccaccaggtctaggaacagcgccgggagacaggggtgattcagggctc
ccagggttcccaggatcccccggcccaaaaggagatctaggattctctggaggccctgga
ggccccggaggccccggatttaaaggagctcgaggtgaaaccggttacagcggatctcct
ggtcttaaaggctttattggcgaccccggttactatggaggcaaaggaccaaaaggattc
cgagggcgccctggacagaagggtcagcctggagtcctgttgccgacgcgatttgaacgc
gtcaaccaacctggagacccgggtcttcctggtcgaagtggaagccctggttttcctgga
ggggccggtcagcctggcctaccaggacgtccaggtgaaaagggacgtcccggcaatgtg
ggtagcctaggcaggaccggcggacccggtctggatggtactaatggtgaagttggaccc
cctggcttccctggacccactggagaccaaggtcaacctggaacagtcggccaacccggc
atacccggcggtgccggccgcagctccagcctgggctacactctggtgaagcacagccag
ggctccgacgtgcccatgtgtcctcagggcatggataagctgtgggacggatacagcctg
ctgtacgtggagggacaggagaaggcgcacaaccaagacctgggtacgccgggctcatgc
ctccccaggttcagcaccatccccttcctctactgttcccccaacgagatctgctactac
gccagtcgcaacgacaagtcctactggctctctacaaccgcacccatacccatgatgccc
gtgaacactgagcagatacggccatacatcagcaggtgttcggtttgtgaggctccgtct
caggccgtggccgtccacagtcaggacctgacgattcccacctgtcctcctggctggagg
agtctctggatcggatactccttcctgatgcacacagcagctggcaaagaaggcggcggc
cagtctttggtgtctcccggctcctgcctggaggatttccgcgcaactccattcatcgag
tgcaacggggccaagggcacatgccactactttgccaacaagtacagcttctggctaacc
accgtggaacccagagaggagttcctctactccccgaacatggagactctgaagggaggt
caggagcgctccaaagtcagccgctgccaagtctgcagccggttcttgtag
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