KEGG   Cololabis saira (Pacific saury): 133420744
Entry
133420744         CDS       T09849                                 
Symbol
col4a6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
  KO
K06237  collagen type IV alpha
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai04510  Focal adhesion
csai04512  ECM-receptor interaction
csai04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csai00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133420744 (col4a6)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133420744 (col4a6)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    133420744 (col4a6)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csai04147]
    133420744 (col4a6)
   00536 Glycosaminoglycan binding proteins [BR:csai00536]
    133420744 (col4a6)
Exosome [BR:csai04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   133420744 (col4a6)
Glycosaminoglycan binding proteins [BR:csai00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133420744 (col4a6)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 133420744
NCBI-ProteinID: XP_061566514
LinkDB
Position
20:18910927..19026234
AA seq 1716 aa
MKLIFCAVALILLVGSSHGGFDSDEPCAGEDCSRGCKCNPEKGSRGRPGPLGPVGPSGPE
GTRGDLGPKGPKGEKGHIGLKGPSGDNGDKGPMGVPGFQGTDGVPGHPGQPGGRGLPGLD
GCNGTRGEPGPVGYGTGSPGSPGITGLSGRPGVKGQKGEPRYVSLDGSGSYPGIRGPAGP
AGFVGPIGPIGNPGPRGPDGYPGSPGPPGPPGLMGSRSDGYLGEKGDKGDVGLPGDPGQP
MINGIGEFVGYRKGDKGLQGDPGLKGYRGNDGTPGRPGPFGYPGEFGEKGIPGYPGARGP
PGFNGPPGSEGQQGFRGDAGYSGQPGYQGPKGDQGEPGPPGPPVYVNGQGVSGRGPPGDY
GRSGVPGVRGDQGSPGYPGPPGEPGGFGGGYGGGYGGLPGFPGTPGPPGEKGSPGAPSYG
PEGQSGSPGPPGPPGPPGPQGPSRYSNDPCKIYPLDPTAGPGPGSGSSSPGLPGLPGSRG
ETGYSGGRGFRGDPGDCNCLGGGSSGYPGGRGGPGANGSPGFAGRKGETGDPGSLGLSGV
QGARGGAGPRGGFGRKGEKGEAYYPYSFSVKGERGNTGLRGAAGEPGKQGRDGLPGFPGN
LGPPGDGGYGTGGEKGFQGFPGSKGAAGQVGESGRGFTGTPGFRGEAGDPGVPGLPGQPG
LPGPRGENSCGGVNDAGEGTGTVLPCTIPGEAGDPGYPGLPGGPGPKGHSGAPGGSGRPG
FDGAKGERGDVGFGGQPGPQGFPGPRGDPGGPGIPGRSFDGGRGKDGIPGRPGPKGQVGD
TLGATPGAPGRDGAPGLPGDKGEPGTNGGPGGPGLDGRIGAPGRRGERGVDGVNGIPGPP
GPPGDPASSFPGRPGAAGIKGLSGSPGFPGRKGDRGDPGYTGREGIKGTQGLPGTPGGPG
SRGLPGPPGSGTRDGIPGIPGRKGEQGFSGVMGFPGLPGRPGSPGFPGGKGLPGGPGGEG
RPGGFGSPGQKGEYGLPGLPGLPGIPQQVGRVEKGDPGDPGSSGFPGFTGPRGDRGSPGS
PGRQGQPGYTPFSEQSKGQPGPPGYAGRPGSPGFPGSKGERGIMGFPGITGPRGDDGGPG
YPGNPGEPGRPGGKGPPGEAYTYPGAPGPKGQAGDPGFSAGGGLDGAPGDPGFPGGPGFP
GAKGAIGEGGRPGASGGPGFPGAKGLPGFPGRQGTDGGPGFPGGPGGPGAKGLPGPSGLD
GLNGLGGPKGLPGTPGGNAGGRPGVNGAFGLKGERGVSYPGGPGFPGQKGERGNPGASGL
QGAPGLPGLPGTSVGSLIPGPVGDPGLPGLDGEYGFQGPPGAAGPPGLGTAPGDRGDSGL
PGFPGSPGPKGDLGFSGGPGGPGGPGFKGARGETGYSGSPGLKGFIGDPGYYGGKGPKGF
RGRPGQKGQPGVLLPTRFERVNQPGDPGLPGRSGSPGFPGGAGQPGLPGRPGEKGRPGNV
GSLGRTGGPGLDGTNGEVGPPGFPGPTGDQGQPGTVGQPGIPGGAGRSSSLGYTLVKHSQ
GSDVPMCPQGMDKLWDGYSLLYVEGQEKAHNQDLGTPGSCLPRFSTIPFLYCSPNEICYY
ASRNDKSYWLSTTAPIPMMPVNTEQIRPYISRCSVCEAPSQAVAVHSQDLTIPTCPPGWR
SLWIGYSFLMHTAAGKEGGGQSLVSPGSCLEDFRATPFIECNGAKGTCHYFANKYSFWLT
TVEPREEFLYSPNMETLKGGQERSKVSRCQVCSRFL
NT seq 5151 nt   +upstreamnt  +downstreamnt
atgaagctcatattttgcgcggtggcactcatccttttggtgggatcttcgcacggaggc
ttcgactctgacgagccatgcgcaggcgaggactgcagcagagggtgcaagtgcaaccca
gagaaaggcagccggggtcgtccggggcctctcgggccagtcgggccaagtggaccagaa
gggacacgtggggacctgggacctaaagggcctaaaggggaaaagggacacattgggctt
aaaggaccatctggggacaatggagacaaaggcccaatgggagtgccaggatttcaagga
actgatggagttcctggtcacccaggtcagccggggggtagaggattacccggtctggac
ggctgtaacgggaccagaggagagcctggaccggtcggctatgggacgggatcacctgga
tcacctggaatcactggactctctggaagacctggggtgaagggtcagaaaggagaacct
cgatacgtctcgttggatggctcagggagttacccaggcattcgggggcccgccggtcca
gctggcttcgtaggtccgattggtccaattggtaatcctggcccgagaggacctgacgga
taccctggttcacccggtcctcccggtcccccagggctgatggggagccgtagtgacgga
tatctaggagagaaaggagacaagggcgatgtgggcttgcccggtgaccctggtcagcca
atgatcaatggcattggggagtttgtgggttatcgcaaaggagacaaaggattgcagggg
gaccctggcctgaagggctacaggggaaatgatgggacccctggacgacctggacctttt
ggctatcctggggaatttggagagaaaggcattcccggataccccggtgcaagaggtcct
ccgggttttaatggacctcccggctctgaggggcagcaggggtttagaggtgacgcaggt
tactcaggccaaccaggataccaaggacccaagggagaccaaggagaaccgggtcctcca
ggacctccagtctatgtgaacggccaaggcgtttccggtagagggcctccaggtgactac
ggccgcagtggcgttccaggtgtccgtggtgaccaaggatctccgggataccctggacct
ccaggcgaaccaggcggttttggcggaggatatggaggaggatatggaggactcccaggt
tttcccgggacccccggcccgccgggagagaagggttctccaggtgctccaagctatggc
cctgaaggacaatcaggttctcctggaccacccggaccccctggccctcctggacctcag
ggcccgtcaaggtattccaatgatccctgcaagatctatcctctggaccccacagctggt
cccggtcccggttccggctccagtagccctggactacccgggcttcctggctccagagga
gaaacaggttacagcggaggcagaggctttagaggcgaccctggcgactgtaactgttta
gggggaggctcttccgggtatcctggcgggcgtggaggtccaggtgccaacgggagccct
ggcttcgcgggacggaagggggaaactggtgacccgggttcacttggtttgagtggcgtc
cagggagccaggggtggagctggtcctaggggcggttttggtcgtaagggagaaaagggg
gaagcgtattacccctactctttctcggtgaaaggagagcgtggaaatactggactaagg
ggggcggcaggtgaaccaggaaaacagggcagagatggactgcctgggttccccggaaac
ctaggaccccctggtgatggcggctatggcacgggtggagagaaaggattccaaggcttc
ccagggtctaaaggtgctgccggacaggtcggcgagtccggcaggggtttcacaggaacc
ccaggcttccgtggagaggctggagatccaggtgtccctggattaccagggcagccgggt
ctacctgggccaagaggtgaaaacagctgtggaggggttaatgacgccggagagggaacg
ggcacagtactgccgtgtaccatccccggtgaggctggagaccccggttatcctggttta
cctggaggaccaggcccgaaaggccactcgggcgcacctggaggctctggccgcccaggg
tttgatggtgccaaaggagagaggggagatgtcggttttggaggccaacctggaccgcaa
ggttttcctggacccagaggagacccgggtggtccaggaattccaggacggagttttgat
ggaggcagggggaaggacggcattccagggcgccctggacccaaaggccaggttggggac
actcttggagccacacctggagctccaggacgggacggtgcacctggactgcctggagac
aaaggcgagcctggaactaatggtggacccggaggccctggtttggacggccgcatcggt
gctcctggacggaggggcgagcgcggagttgacggtgtcaatggtattcccggtcctccc
ggaccaccaggtgacccggcctcaagctttcctggtcggcctggagctgctggcatcaaa
ggactgagcggatccccagggttccctggacgaaagggagacagaggagatccaggttac
accgggcgagaaggtatcaagggaacccaaggacttccaggcactcctggaggaccaggg
tcaaggggactccccggacccccaggatcaggaaccagagacggaatcccgggaatacca
ggaagaaagggtgaacaaggcttttcaggagtgatgggtttccctggactaccaggtcgc
cctggatctccaggcttccctggaggaaaaggattgcccggaggacccgggggagaagga
agacctggcggttttggatcacctggacaaaaaggcgaatacggactgcctggtctaccc
ggcttgcctggaattccgcaacaggttggaagagtggagaaaggagaccctggagaccct
gggtcctcaggtttcccgggcttcactggacccagaggggacaggggttcgcctggttca
cctggtcgccaggggcagccgggatacactcctttcagtgaacagagcaaaggacagccc
ggcccgcccggatatgcaggacgtcccggatccccaggctttcctgggtcaaagggggaa
agaggaatcatgggattccctggcataacaggaccaaggggggatgatggtggccctggg
taccctggcaaccctggagaacctggtcgtcctggtggaaaaggtccacctggcgaagct
tacacttatcccggagctccagggcctaaaggccaagcaggagatccaggcttctcagct
ggtggaggacttgacggtgcccccggtgaccccggcttcccaggggggccaggtttccct
ggtgcaaaaggtgctatcggtgagggaggacggcccggagcatcaggcggtcctggtttc
cctggggcaaaaggcctgcctggattcccaggaagacaaggaacagatggtggtcctggt
ttccctggaggtccaggaggtccgggggcgaaaggtttgcctggaccatctggtctggat
ggactcaacggccttggtggacctaaaggtctcccaggaaccccaggggggaacgcagga
ggtcgccctggtgtcaatggtgcttttggattgaagggagagagaggtgtgtcctaccct
ggaggcccaggctttcctggacaaaaaggagagagaggaaaccccggtgcttctggactc
caaggtgcccctggcctgccaggacttccaggaacatcagtaggatcactcatccctgga
cctgtgggagaccccggcctccctggactggatggagaatacggtttccagggtcctcca
ggtgccgctgggccaccaggtctaggaacagcgccgggagacaggggtgattcagggctc
ccagggttcccaggatcccccggcccaaaaggagatctaggattctctggaggccctgga
ggccccggaggccccggatttaaaggagctcgaggtgaaaccggttacagcggatctcct
ggtcttaaaggctttattggcgaccccggttactatggaggcaaaggaccaaaaggattc
cgagggcgccctggacagaagggtcagcctggagtcctgttgccgacgcgatttgaacgc
gtcaaccaacctggagacccgggtcttcctggtcgaagtggaagccctggttttcctgga
ggggccggtcagcctggcctaccaggacgtccaggtgaaaagggacgtcccggcaatgtg
ggtagcctaggcaggaccggcggacccggtctggatggtactaatggtgaagttggaccc
cctggcttccctggacccactggagaccaaggtcaacctggaacagtcggccaacccggc
atacccggcggtgccggccgcagctccagcctgggctacactctggtgaagcacagccag
ggctccgacgtgcccatgtgtcctcagggcatggataagctgtgggacggatacagcctg
ctgtacgtggagggacaggagaaggcgcacaaccaagacctgggtacgccgggctcatgc
ctccccaggttcagcaccatccccttcctctactgttcccccaacgagatctgctactac
gccagtcgcaacgacaagtcctactggctctctacaaccgcacccatacccatgatgccc
gtgaacactgagcagatacggccatacatcagcaggtgttcggtttgtgaggctccgtct
caggccgtggccgtccacagtcaggacctgacgattcccacctgtcctcctggctggagg
agtctctggatcggatactccttcctgatgcacacagcagctggcaaagaaggcggcggc
cagtctttggtgtctcccggctcctgcctggaggatttccgcgcaactccattcatcgag
tgcaacggggccaagggcacatgccactactttgccaacaagtacagcttctggctaacc
accgtggaacccagagaggagttcctctactccccgaacatggagactctgaagggaggt
caggagcgctccaaagtcagccgctgccaagtctgcagccggttcttgtag

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