KEGG   Cololabis saira (Pacific saury): 133420761
Entry
133420761         CDS       T09849                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain
  KO
K06237  collagen type IV alpha
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai04382  Cornified envelope formation
csai04510  Focal adhesion
csai04512  ECM-receptor interaction
csai04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:csai00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    133420761 (col4a5)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    133420761 (col4a5)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    133420761 (col4a5)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    133420761 (col4a5)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:csai04147]
    133420761 (col4a5)
   00536 Glycosaminoglycan binding proteins [BR:csai00536]
    133420761 (col4a5)
Exosome [BR:csai04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   133420761 (col4a5)
Glycosaminoglycan binding proteins [BR:csai00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   133420761 (col4a5)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 133420761
NCBI-ProteinID: XP_061566545
LinkDB
Position
20:complement(18849790..18907075)
AA seq 1687 aa
MSKDSQSLRQLAAAALLFLSLCVAVQRSESAACHGCVGSKCDCSGVKGGKGDRGFPGLPG
QPGVPGFPGPEGPNGPRGEKGGDGPLGLSGPKGIRGPSGLPGFPGTPGLPGLPGQDGPPG
PRGTAGCNGTKGERGLPGNLGLNGQTGLPGPPGLPGEKGDPGDVISTNRFGEKGSVGLPG
LPGTPGIPGNAGLQGPSGPAGPRGYDGRPGPPGPPGPKGNMGLNFQGPKGEKGQPGTEGP
PGPPGQVGEQKRPPETEIQRGDKGDRGYPGSPGDPGFPGQPGSSGGAKGDKGEPGEAGKR
GKPGKDGDPGAPGFPGIKGDSGLPGLPGRDGDRGQKGELGYPGPPGAVYGDNNNGGRGGG
GGQKGDPGIPGSPGSKGERGPQGLSGPPGVPGRPGGGGGGGTGAPGFPGDKGQKGTSGEP
GISLPGPPGRSGAPGDRGQQGLPGPPGYSSSGQNCVNGSPGRPGGQGERGYPGEQGQKGD
KGDTCFNCNGGSNAVPGSSGPPGPPGFPGSPGAPGNKGDRGFPGTPGSVGSPGSSGPQGP
PGFPGEKGDPGQAISASGQRGEKGDTGFPGSPGQPGLDGRPGRDGTPGSPGPKGSPGALQ
VKGTRGAPGEPGVPGFPGDRGPAGAPGYGPPGPSGDKGVQGVAGRPGPSGIPGAKGEPGL
AVAEKGLPGPRGQDGQPGSPGTAGSPGQNGQPGFPGSPGGKGDPGLPGIGLPGPPGVKGF
PGISGQPGAPGEPGRPGVDGLPGSPGFGGPKGDPGFGQPGSPGLPGIPGAKGFYGPKGDS
GFPGSPGQPGRSGVDGGPGQKGDAGIPGIPGGRGPPGAPSIGAVGPPGPPGPQGALGQPG
FPGGNGAKGDPGVPGRDIQGPPGDRGSPGFPGSPGGIGPAGAPGGPGRDGFPGGPGLKGD
MGPMGPPGPGGGPGGPGGPGGPGAKGEPGFPGRDGSQGPSGAKGERGQSGAPGPQGISQP
IAAIKGTKGDLGQPGASGFPGQKGERGVSGEPGLPGSDGRPGTPGPAGLKGEAGIPGGPG
GPGAPGLKGTIGDMGIPGPTGQKGESGIPGRSGGPGSPGGPGFPGAKGEPGSAGVGPPGV
QGPKGDAGSPGYPGGPGQKGSPGPSGLPGGPGGPGFKGDPGLPGFQGSPGIPGAKGLDGG
PGAPGLPGSAGRPGESGRPGGPGLPGDKGQAGRDGIPGPAGVKGDPGLPGYGGPGTPGIP
GGPGAKGEPGLPGPSGSPGFPGSKGDGGFPGSPGPPGNSGPQGSPGPAYQGPKGLQGPPG
PPGRGGSPGPQGARGPPGSGGLKGDKGIPGSPGQPGFPGSKGDPGVSGLPGSPGFPGGSG
GKGDVGLPGVPGFPGQKGDPGSPGASGLSGDPGDVGAPGLPGDNAVPPPPYTVKGDPGIP
GSPGGPGSQGAPGSPGRDGSPGGPGGPGDPGSEGPPGFSGAPGRKGDNGPAGQPGGRGFP
GPPGSDGPQGPPGLPGSVSAAHGFLITRHSQTGEVPYCPDGTSPIYDGYSLLYVQGNERA
HGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMAVITGESIK
PFISRCSVCEAPAMVIAIHSQTIQIPSCPRSWEPLWIGYSFMMHTSAGAEGSGQALASPG
SCLEEFRSAPFIECHGRGTCNYYGNSYSFWLATVEEGDMFRKPQSETLKAGNLRTRVSRC
VVCMKRT
NT seq 5064 nt   +upstreamnt  +downstreamnt
atgagtaaagactctcaaagcctgcgccagctcgcggcggcggcgctgctcttcctcagc
ctgtgcgtcgcggtgcagcggtccgagtctgcggcttgccatggatgtgtaggatccaaa
tgcgactgcagtggagttaaaggaggaaagggtgacaggggcttcccaggtctcccagga
caacctggagtcccggggttcccaggacctgagggaccaaacggacccagaggagagaag
ggaggtgatgggcctctaggactatctggtccaaaaggaattagaggcccgtctgggttg
ccaggattcccaggaacgccaggacttccgggtctaccaggacaggacggccccccagga
ccaagaggaacagcgggttgtaatgggacaaagggtgaaaggggtctcccaggaaattta
ggactcaatggacagacaggtctcccgggtccacctggtctgccaggagaaaagggagac
ccaggtgatgtgatttccaccaatcgttttggagagaaaggatcggtaggattgcctgga
ttacctggaactcctggtattcccggtaatgcaggtttacaaggtccaagtggccctgct
ggaccaagaggctatgatggtcgtccaggtcctcctggtccccccggaccaaagggaaac
atgggactgaacttccaaggacctaaaggagaaaagggtcagccaggtaccgaaggccct
cctggtcctccaggacaggtcggagaacagaagaggcccccagagacggagattcagaga
ggagacaagggtgaccgaggatatcctggttctccaggtgatccaggctttccaggacaa
cctggttcctctggtggagcgaaaggtgataagggagaaccaggagaggcaggcaaacga
ggaaaaccaggaaaagacggggatccaggtgctccaggattccctggaatcaaaggagac
tcaggccttccaggtcttccaggccgggatggagacagaggacaaaaaggtgaacttgga
tacccaggtcctccaggagcggtatatggagataataataatggaggtcggggcggcggc
ggcggtcaaaagggcgaccccgggattcctggatcacctggaagtaaaggagaaagagga
ccacaaggtttatcaggacctccaggagtgccaggacgcccgggcggcggaggcggtggt
gggactggagctccaggcttcccgggagacaagggtcagaaaggaacctcaggcgagccc
ggcatctctctgccaggtccaccaggaaggtcaggagctcctggggaccgtggtcagcag
ggactccccggacctccgggctattcctcctcaggacaaaactgtgttaacgggtcgcct
gggcgccctggggggcagggagaaagaggttaccctggcgagcaggggcagaaaggtgat
aagggcgacacctgcttcaactgcaatggaggaagcaatgctgtccccggatcctcagga
cctccaggaccacccggattccctggatctcctggcgctccaggtaacaagggagacaga
ggattcccaggaacacctggttctgtcggttctcctggaagctctggtcctcaaggtccc
ccaggtttccctggagagaaaggagatccaggccaggccatctcagcctccggtcagaga
ggagagaagggagacactggcttccctggatcccccggtcagcccggtctggatggtcga
cccggccgtgacggaacccccggatctcctggtcccaagggatctcctggtgctctgcag
gtaaaaggaacacgaggggccccaggtgagccaggtgtccctggcttccctggagacaga
ggcccagcaggggcccctggctacggacctccaggtccatcaggagacaaaggtgtgcag
ggcgttgccggaagacctggaccttctggaataccaggtgccaaaggtgaaccaggtctg
gcagtggcagagaaaggtttaccgggacccagaggacaggatggtcagccaggatcccct
ggtaccgcaggttccccaggccagaatggtcagcctggtttccctggttcaccaggaggg
aagggtgaccccggactcccaggcattggactcccaggtccccctggagtgaaaggattc
ccaggtatttccgggcagccgggtgctcctggagaaccaggcagaccaggagtagatgga
ctccccggctccccagggttcgggggacccaagggtgatcctggctttggacagcctggt
tctcctggtttaccaggaatacctggagctaaaggattttacggaccaaagggagattcc
ggtttccctggctcccctggtcaacctggacgatctggagtagatggaggccctggacaa
aaaggtgacgctggaatacctggcatccctggcggtcgtgggccacctggagctccctcc
attggcgcagttgggcccccaggccctcctggacctcaaggcgcactaggacaaccagga
ttccctggtggaaacggagcaaagggagaccctggtgttcccggtcgagacatccagggt
ccaccaggagacagaggaagtccaggtttcccaggttccccaggaggaattggacccgca
ggagcccctggaggacccggtcgggatggcttccctggagggccaggtctgaagggtgac
atgggtcccatgggaccaccaggaccaggtggtggacctggcggcccaggaggacccggt
ggtccaggagccaaaggagaaccaggattcccaggtagagatggttcacaaggtccctct
ggagccaaaggagagaggggacaatccggagcccctggaccccagggtataagtcagcca
atagcggctataaagggaaccaaaggagatcttggacaaccaggtgcatcaggtttccca
gggcagaaaggagaacgtggtgtctcaggtgaacctgggctgccaggatcggacggacgt
cccggaacaccaggaccagcgggtcttaagggtgaagctgggatcccaggaggcccagga
ggtcctggagctccaggactcaaaggcaccattggagacatgggaattccaggaccaacg
gggcaaaagggtgaatcaggtattccaggaaggtcaggaggcccaggttcgccaggaggg
cctggcttccctggagccaaaggagaacctggttcagccggtgttggaccaccaggagta
caaggaccaaagggagacgcaggttcaccaggatacccaggcggtccaggacagaaggga
agcccaggaccatccggtctcccaggaggtccaggaggtccaggcttcaaaggcgacccc
ggtctcccaggattccaaggttcccccggtatccccggcgcaaagggtcttgacggtggt
cccggtgctcctgggctacctggatctgcaggtagaccaggagagtccggtcgaccagga
ggacctggactgcctggggacaagggtcaggcgggtcgggatggaattccaggaccagcc
ggagtcaaaggagacccaggtcttcccggttatggtggtcctggtactccaggaattcca
gggggtccaggtgccaagggagagccaggtcttcctggtccctctggtagtcctggtttc
cccggtagtaagggagatggcggcttcccaggatctccaggccctccagggaattcaggt
cctcaagggtctccaggaccagcttaccagggccctaaagggctccaaggaccccctgga
ccacctggaagaggaggttcacctggcccacaaggtgcccgtggacccccaggaagtggc
ggccttaagggagacaagggaattccaggctctccaggccagcctggcttcccgggaagt
aaaggagaccctggtgtttcaggattaccgggctcccctggtttccctggcggctccgga
ggcaaaggagacgttggactgcctggtgtcccaggattccctggacaaaaaggagaccca
ggttcccccggtgcatccggcctttctggagatcctggtgatgttggagcacctggtctt
cctggtgacaatgcggtacctccacctccctacactgtgaaaggagatccaggaatccct
ggatctccaggcggccctggttctcagggagcacccggttcccctggacgtgacggatcc
cctggcgggcctggtggtcctggagatcctggttctgaaggtcctccgggtttcagtggc
gctcctggcagaaagggtgacaacggacctgctggtcagcctggtggtcgtgggttcccc
ggccctcctggttcagacgggccacagggcccgcccggtcttcctggatcggtctctgca
gctcacggcttcctcatcaccaggcacagccagaccggggaagtgccctactgtcccgat
ggaacctccccgatctacgatgggtattctctgctgtatgttcagggcaacgagcgggcg
cacggacaggacctcggcacagccggcagctgcctgcgcagattcagcaccatgcccttc
atgttctgcaacatcaacaatgtctgcaacttcgcctcccgtaacgactactcctactgg
ctgtccacaccgcagcccatgcccatgtccatggcagtcatcactggggagagcatcaag
cccttcatcagcagatgctcggtctgtgaagctccagccatggtgatcgcaatccacagt
cagacaatccagatccccagttgccctagaagctgggaaccactatggattggatactcc
ttcatgatgcacaccagcgccggggccgagggctccggtcaggccttggcctcccctgga
tcctgcctggaggagttccgcagcgctccgttcattgagtgccacggcagagggacgtgc
aactactacggaaactcctacagcttctggctggccaccgtggaggagggcgacatgttc
aggaaaccccagtcagagaccttgaaggcgggtaacctacggacacgcgtcagccgctgc
gtggtctgcatgaagaggacgtaa

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