Cololabis saira (Pacific saury): 133420865
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Entry
133420865 CDS
T09849
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133420865 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
csai03041
]
133420865 (dhx15)
03009 Ribosome biogenesis [BR:
csai03009
]
133420865 (dhx15)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133420865 (dhx15)
Spliceosome [BR:
csai03041
]
Complex A
U2 snRNP components
U2 related factors
133420865 (dhx15)
Complex B
133420865 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
133420865 (dhx15)
Ribosome biogenesis [BR:
csai03009
]
Eukaryotic type
90S particles
Helicases
133420865 (dhx15)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
DEAD
WHD_HA2
Helicase_C
AAA_22
AAA_19
SRP54
Flavi_DEAD
AAA_29
Cas3-like_C_2
nSTAND3
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
133420865
NCBI-ProteinID:
XP_061566722
LinkDB
All DBs
Position
20
Genome browser
AA seq
739 aa
AA seq
DB search
MRRDRDRDRDRDRNRDRDRNRDRERDRDRERNVKAPEVPVSPAASSFGFLMQSSNQQKIN
PFTNLPHTPRYHEILKKRLQLPVWEYRERFTEILMTNQSFVLVGETGSGKTTQIPQWCVD
MVRSMAGPKRSVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYSIRFEDCSSAKTVLKYM
TDGMLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVARQRSDLKVIVMSATLD
AGKFQVYFDSCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVIQLHMCEVDEGDVLLFL
TGQEEIDEACKRIKREVDDLGPEVGDLKTIPLYSTLPPQQQQRIFEPSPPNKPNGAIGRK
VVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQQRAGRAGRT
CPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPETL
MRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEFNCSNEVLTITAMLSV
PQCFVRPTEARKVADESKLRFAHIDGDHMTLLNVYHAFKQNQDSTQWCYDNFVNYRSLMS
ADNVRQQLSRIMDRFSLPRRSTDFTSRDYYTNIRQALVTGFFMQVAHLERTGHYLTVKDN
QVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLLKISPQYYEMGNFPQCEA
KRQLERIFAKLSSKEYTQY
NT seq
2220 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgggacagggaccgggatcgtgatcgggatcggaacagggaccgggatcgaaat
cgagacagagaaagagacagagacagagagagaaacgtgaaagcacccgaggtccccgtc
agcccggctgcttccagttttgggttcttgatgcagtcctccaatcagcagaagataaac
cccttcaccaacttgccccacacacctcgctaccatgaaatcctgaagaaacgactgcag
ctgcctgtctgggagtacagagagcgcttcactgaaatcttgatgacgaaccagtctttt
gtgcttgtgggagaaacaggctctggaaagaccacgcagatccctcagtggtgtgtggat
atggtgcggtcaatggcaggacccaagagatctgtggcgtgcacccagcccaggagggtg
gcggccatgagcgttgctcagagggttgcagatgagatggatgtgatgctgggtcaagag
gtcggctattccatcaggtttgaggactgcagttctgccaagactgtgctcaagtacatg
acagatggaatgttgctgcgggaggcgatgaacgatcccctgctggagcgttatggtgtc
atcatcctggacgaagcccacgaacgcacattagcaacagacatcctcatgggggtcctc
aaggaagtagcccgccagaggtctgaccttaaggtcatcgtcatgagtgcgacgctggat
gccggtaaattccaagtgtattttgacagctgcccgctgttaactatccccggacgcacg
caccccgtggagatcttctacacgccggaaccagagcgagactacctggaggcagccatt
cgtactgtgatccagctccacatgtgtgaggtggatgagggggacgttcttcttttcctc
actgggcaagaggaaattgatgaagcctgcaagcgaatcaagcgggaggtcgacgacctg
ggacctgaagttggtgatctgaaaaccatcccgctgtactccaccctgcctccgcagcag
cagcagaggatcttcgagccatccccacccaataaaccaaatggtgccattggaaggaag
gtcgtcgtgtcaacaaacatagccgaaacatccctgaccatcgatggagtggtgtttgta
attgatcccggatttgccaagcaaaaggtgtataacccacgtatcagagtggaatctctt
ctggtcacagccatcagcaaggcctcagcccagcagagagcaggccgtgctggacggacg
tgccctggaaagtgtttccggctgtacacggagaaagcgtacaaaacagaaatgcaggac
aacacgtatccagagattcttcgctcgaatctgggctcagtggtgctgcagctcaagaaa
ctgggtattgatgatctggtgcacttcgacttcatggacccgccagccccggagaccctg
atgcgagctctcgagctgctgaactacctggcagcgctcaacgacgacggtgacctgacc
gagctgggctccatgatggcggagttccccctggacccccagctggccaagatggttatc
gccagctgtgaattcaactgctccaacgaggttctcaccatcactgccatgttgtcagtc
ccacagtgcttcgtccgccccactgaggccaggaaggtggctgacgagtccaagctgcga
ttcgcccacatcgatggagaccacatgacactgctcaacgtctatcatgctttcaaacaa
aaccaagattccactcagtggtgctacgataacttcgtcaactaccggtcgctaatgtcg
gcagacaacgtacggcagcagttgtcgaggatcatggaccgcttcagcctgccgcggagg
agcaccgacttcaccagccgagactattacaccaacatccggcaggcgctggtcaccggc
ttcttcatgcaggtggctcacctggagcgcacaggccactacctgacggtgaaggacaac
caggtggtgcagctgcacccgtccaccgtgctggaccacaagcccgagtgggtgctctac
aacgagttcgtcctcaccaccaagaattacatccgcacgtgcacggacatcaagccggag
tggctgctgaaaatttccccgcagtactacgagatgggcaacttcccccagtgcgaggca
aagagacagttggaacgcatttttgcaaaactgtcgtccaaggaatacacgcagtactaa
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