Cololabis saira (Pacific saury): 133421430
Help
Entry
133421430 CDS
T09849
Symbol
ciita
Name
(RefSeq) MHC class II transactivator isoform X1
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
csai01001
]
133421430 (ciita)
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
csai04054
]
133421430 (ciita)
Enzymes [BR:
csai01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
133421430 (ciita)
Protein kinases [BR:
csai01001
]
Serine/threonine kinases: Other
TAF1 family
133421430 (ciita)
Pattern recognition receptors [BR:
csai04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
133421430 (ciita)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NPHP3_N
LRR_14
AAA_22
AAA_16
LRR_4
NLRC4_HD2
nSTAND3
DUF815
NB-ARC
TsaE
AAA
AAA_19
Motif
Other DBs
NCBI-GeneID:
133421430
NCBI-ProteinID:
XP_061567010
LinkDB
All DBs
Position
21:complement(26082907..26111363)
Genome browser
AA seq
1466 aa
AA seq
DB search
MPTQDKHQLNGRVFSTPISESQCRLRLNDEIREVLSSAESQQKPASDNERINKGNLENEE
EWLEQVEEAARRIAVPLWQHWDRARGMMQPLVPCMTAGWSTSSNMILDCEAEAFVLDMEE
ELELAAACRSLAARAGTFECTDLGITDTNSAEEDGDEPEGLHLSDISTTTGLNAGHFRKA
SPIETNMGCKLRGCLDPWFTDDRTADELFYKTASGLPESTFMHLSAGAPKDAKHAVEMNS
FYLNPCYSMTEGDTDIVRNDGQPEIFEEKDLHGDAKMQTLDQDTLNLLDFNLPEDLSEYL
NEDYLDPAVLFDDLRLSALDEPNHHNVSSPTDVPNPPNYHEQREKNKLPGKRKTREKRKT
VPHSQLCAEENPTLKRKKAAETGDGPVSVPAQTMTGLCTTPPKILHVYSPQSATPIPIQF
ITIPDNSGYQLVRLASPPPVIRLSNTAANPTYILVPATSPPCQRQVPPLSPVGGAVAPVL
MSSSPPGSLSDSASKAMSTFCASPPSPSYEISPCKESPQSPTVVDIPQGVKDYIQEAKAH
VLQACQHMEPGLSMTSHYIEVQVSQREILRSGKTANKCLDKELVITGDIDRQKSALSPNQ
IFQSNGDRSRRCILLLGNAGMGKTTLIKKLCLDWSRDCSHQFDFVFLLDGKGLTLTEPVH
SLQSLLLDLSSLAPCCKDPEAVYAQILAAPKRVLIIFDGFDELRDYETLLQTLEKDLVTS
LQKDSKAQTFTVRQLYSAILQRVLIPGCTLLLSTRPRGTANQLLRRADSLLEVRGFSPTN
VEVYLSQYFTDSALRASALDCLKGSCYLHLLCWNPGLCRLVCTVLERCKSPDLLPRTLTG
LCRQVLSLKMEKDRGSAQSHDENQAQISTQSGQETPTETVKGSRERRFSTSKRAKSTSSY
TPRPRRAKEREKEVEKADEISVEADRAEDREIVSRLRCLAWEGVKANTSILPSERAVSAN
VKAFGLRTGLLLCQSLRTRPLNSNGEPDGRRNEDKNEMGGQDGEQKENRGNVDIIDDGDK
HILLWANPFLQSYMAALHLCFSRTVSDRSFLLNLPFQTGGKGRRRPQREELELTQRFVVG
LLFHSSTDAHGIRSHAESPFGDTLATKQDLVTKHLDGLSYGNLSPAQVLEACHCIYEASF
TRDESSRDTGLLSRLAANLPESLTFRGVPLSPPDVFTVQKALEQGGAGGRNFCLDLEDSG
IQICGLRALMSLNNINTYRACIADVIALWEQLEQSSEEGLLQGAVSKFKIHPLKVTQVCH
IEHLEKLVNIHVHKRLSDSSSQSDSILAEGVPAVKELHKLEFELGPENGPLALPKLWDLL
PGLHNLQHLDLENSKIGDQGAEKLADALVSLCSLEILNLSQNCIGDQGVKKLALPLKDLP
RLLCLSLYSNVISDEGAESLAAVLPHMASLTDLDVKYNKFTDVGAQSFGDSLRKCRKIKS
LRMWNQCIPYRVFERLQQQDGRILWH
NT seq
4401 nt
NT seq
+upstream
nt +downstream
nt
atgccaacacaggacaaacaccagctcaatggcagagtcttctctacaccaatatctgag
tcccagtgtaggcttagactaaatgatgaaataagagaagtgctgagcagtgcagaatca
cagcagaagcctgcaagcgataatgaaaggataaataaggggaatttggagaatgaggag
gagtggttagagcaggtagaagaagcagctcggaggatagctgttcctctgtggcagcac
tgggacagagcgcgagggatgatgcagccgctggttccctgtatgactgccggctggtca
acaagcagcaacatgattttagactgtgaagcggaggcctttgttttagatatggaagag
gaactggagcttgcagccgcttgcaggtcacttgccgcccgtgcgggcacgtttgagtgt
acggacttgggcatcacagacacaaactcggcagaagaagatggtgacgaaccagaaggc
cttcacctttctgacatttcgacaactacaggactgaacgcaggtcatttcagaaaagcc
tcacctattgaaacaaacatgggctgcaagctgaggggttgcctggacccctggttcaca
gatgacaggacagcagatgagctgttctataaaacagcctctggactcccagagagcacg
tttatgcatctttctgcaggtgcaccaaaggatgctaaacatgcagtggaaatgaattct
ttttacttaaatccatgttatagcatgacagagggggatacagacattgtcaggaatgat
ggacaaccagaaatctttgaggaaaaggatttacacggggatgccaagatgcagaccttg
gaccaggacaccttaaacctcttagacttcaatctaccagaggatttatctgaatacttg
aatgaagattacttggacccagcagtgctctttgatgatctcaggttaagtgcgttggat
gaacccaaccatcacaatgtatcgagtccaacagacgtccccaacccaccaaactaccac
gagcagagagaaaagaacaaactaccaggcaaacgtaaaacgagggaaaaaaggaaaaca
gttcctcattctcagctatgtgctgaggaaaaccccacgttgaagaggaaaaaagcagca
gagactggtgatggaccggtatcagttccggcacagaccatgacgggactttgcaccact
ccaccgaaaattcttcacgtatattccccgcagtcggcgactcccattcccattcagttc
atcaccatcccagacaactcagggtatcagctcgtccggctggcttctcctcctcccgtg
attaggctgtccaacacggctgctaaccccacatacatactggttcctgctacctcacca
ccctgccaacgccaagtgccaccactctccccagtgggcggtgccgtggcaccggttctg
atgagctcatccccaccaggttctctgtcagactcggccagcaaagccatgtctaccttt
tgtgcttcacctccttctcctagttatgagatttccccatgcaaggaatccccacagtcc
cccactgttgttgacattccacagggtgtgaaggactacattcaggaagcgaaagcccac
gttttgcaagcctgccagcacatggagcccggcctgagcatgacttcgcattacatcgag
gtgcaagtgagccagagggagattctgcgctcgggaaaaactgcaaacaaatgtctggac
aaggaactagtcatcaccggagatatagatcggcaaaaaagtgcactgagcccgaatcaa
atctttcagtcaaacggagacagatctagacggtgtattttgttgctcggcaatgccggt
atgggaaaaacgactcttatcaagaagctgtgtcttgactggtccagagactgcagccat
cagtttgactttgtctttttgttggacggcaaaggactcacgttaaccgagcccgtccac
agcctccagtcgctccttctcgacctctcctccttggccccgtgctgcaaggaccccgag
gcggtgtatgctcaaatccttgcagcccctaaacgcgtgctcatcattttcgacgggttt
gacgagctgcgggactatgaaactcttctccagactctagaaaaggacttggtgacgtca
ttgcagaaagacagcaaggcacagaccttcacagtgcggcagttgtactccgccatcctc
cagagggttctgattccaggttgcactcttttgctctccacgcggccccgaggcaccgcc
aaccagctgctgcggcgtgcagacagtctcctggaggtacgaggcttcagcccaaccaat
gttgaggtttatttgtcgcagtacttcactgattctgccctcagagcatctgccctggac
tgcttaaaaggcagctgctacttacacctcctctgttggaaccccggactttgccggctg
gtgtgcacggttttagaacgctgcaagagtccagatctcctaccgagaactttaactggg
ctctgtcgtcaagtgctttctttgaaaatggaaaaagacagagggagcgcacagtcgcac
gatgaaaatcaggcacaaatatctacgcaatctggacaagaaactccaacagaaactgta
aagggttctcgagagaggaggttttccactagcaaacgggcaaagtccacttcctcttac
accccaagacccaggagagctaaagagcgggagaaagaggtggagaaagcggatgaaatc
tctgtagaagcagacagagcagaggacagagagatcgtgtcccgactgaggtgtttggcg
tgggaaggggtcaaagccaacacctccatccttccatcggaacgagccgtgtctgccaac
gtcaaggcgttcggcctcaggacggggctcctgctctgtcagagcctgaggacgaggcca
cttaactccaacggtgagccggacgggaggagaaatgaagacaaaaatgaaatgggagga
caggatggggagcagaaggaaaacagaggaaatgttgacattattgatgacggagataag
cacatcctgctgtgggccaacccttttcttcaaagctacatggctgccctccatttgtgt
ttttcaaggactgtatcggaccgttccttcctcctaaacctccctttccagacgggcggt
aagggccgccggcgacctcagagggaggagctggagctcacgcagcgattcgtagtcggc
ctccttttccacagcagcacagatgctcacggcatccgctcccacgcagagtcacccttc
ggggacacgctggccaccaagcaggatctggtaaccaaacacttggacggtctttcctat
ggcaacctgagtcccgctcaggtcctcgaggcctgccattgcatttatgaagcaagtttc
acacgtgacgagagcagcagagacacaggactgttgagccgtctggcagcaaatcttccc
gagtccctgacgtttcgtggcgttcccctcagcccgccagatgttttcactgtgcagaag
gctcttgagcagggcggggctggaggcagaaacttctgtttggatttggaggactccggg
atacagatctgtggactcagagcgctgatgagcctcaacaacatcaatacatacagggca
tgtatcgctgatgtcatcgccctctgggagcagctggagcagagcagcgaagaggggctc
ctacaaggagccgtgtccaagttcaagatccaccctctgaaggtcacgcaggtgtgccac
atcgagcacctggagaagctggtcaacatacacgtgcacaagaggctgtcggacagctcc
agccaatcagactccatcctggcagaaggggtcccagcagtcaaagaactacacaagctg
gagtttgagcttgggccagaaaacggtcccttggcacttcctaagctgtgggacctccta
ccagggctgcataatctacaacacttggatctggagaacagtaagattggtgaccaagga
gctgagaagctggcggatgctttagtctccctctgctctctggagatactaaatctgtca
cagaactgcataggagaccagggagtgaagaaactggcacttcctttgaaggacctgccc
aggctgctctgtttaagtctgtacagcaatgtgatttctgatgaaggggccgaatcgtta
gcagctgtcctcccacacatggcctctctcacagacctcgatgtgaaatacaacaagttt
acagatgttggagcgcagagcttcggagacagtctgagaaagtgtagaaaaatcaagtcc
ttgaggatgtggaaccagtgcatcccgtacagagttttcgagagacttcagcagcaggac
ggtcgcatcctttggcattag
DBGET
integrated database retrieval system
