Cololabis saira (Pacific saury): 133421458
Help
Entry
133421458 CDS
T09849
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133421458 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133421458 (xab2)
03041 Spliceosome [BR:
csai03041
]
133421458 (xab2)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
133421458 (xab2)
Spliceosome [BR:
csai03041
]
Complex B
Other components
Prp19-related factors
133421458 (xab2)
Complex C
133421458 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
TPR_12
Suf
TPR_2
TPR_8
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
NRDE-2
TPR_1
Tcf25
SNAP
Motif
Other DBs
NCBI-GeneID:
133421458
NCBI-ProteinID:
XP_061567057
LinkDB
All DBs
Position
21:12816167..12824976
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLTGKADVIFEDDDLPYEEEIIRNPYSVKCWMRYLEFKQNGAKSTLNMIYERALRELP
GSYKLWYNYLRERRKQVKGKCVTEPVYEEVNNCHERALVFMHKMPRIWLDYCQFLVSQCK
MTRSRRTFDRALRALPVTQHPRIWPLYLRFVRNLPLPETAIRVYRRYLKLSPENAEEYID
YLRSVGRLDEAAVRLAAIVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEES
MIAAKMETTAEMGQDEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYEGNPRQIINTYTEAVQTVDPMKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAAVWCEYGEMELRHENYEQALRILRKATAIPSRKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTVYLLYAKLEEE
YGLARHAMAVYERATQAVETQERHHMFNIYIKRAAEIYGVTYTRAIYQKAIEVLPDEHAR
EMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSVQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGIDDMKMLEQKAQQLAAEAEQ
DKPKPKEKILFVRSDTSRSELAELAKQANPDEINIDDDDEDDDDQGPDEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttctttaacaggaaaagctgatgttatttttgaagatgatgatcttccttatgaa
gaggagattattagaaatccgtactcggtcaagtgctggatgcgttaccttgaattcaaa
cagaatggagcaaaatctaccctcaacatgatctatgagcgggccctgagagaactgcct
ggcagctacaaactctggtacaattatctgagagagagacgtaaacaagtcaaaggaaaa
tgtgtcactgaaccagtctatgaggaagtcaataattgtcatgaaagggcactggtgttc
atgcataagatgccaaggatatggcttgattactgccagttccttgtgtctcagtgtaag
atgacaagaagtcgacggacatttgatcgtgcactccgggccctacctgtaactcagcac
ccacggatctggcctttgtatctccgctttgtccgtaacctacccctgcctgagacagcc
atccgggtgtatcgcaggtaccttaagctttctccagaaaacgcagaggaatacatcgac
tacttgcggtctgttggccgcctggatgaagcagctgtgcgtctagctgctatcgttaat
gatgaaagctttgtgtccaaagagggcaagtctaactatcaactgtggcatgagctgtgt
gacctgatctcacagaaccctgataaggtgacctctctaaatgttggagctatcatacga
ggaggcttaactcgcttcaccgaccaacttggaaaactttggtgctctttggctgattat
tacatcaggagcggacactttgagaaagcgcgtgatgtctatgaggaggccatcctaaca
gtggtaacagtcagggatttcacacaagtgttcgatagttatgctcagtttgaggagagc
atgattgctgctaagatggagaccactgctgagatgggacaggatgaagaagacgacata
gacctggagcttagactggcacgctttgagcagctaatagcccgtcgcccccttctgcta
aacagcgtactcttgaggcagaacccccacaatgtccatgagtggcacaaacgggtgaaa
ctgtatgaggggaatccacggcagatcataaacacgtatactgaggcagtacagacggtg
gatccaatgaaggccacaggaaagcctcactctctctgggtgtcctttgctaaattctat
gaggaaaatgagcagctggatgatgccaggacaatttttgagaaggctaccaaggtgaac
tacaagcaggtagacgaccttgctgcagtgtggtgtgaatatggagagatggagcttcgt
catgaaaactatgaacaggcgctacgcatactgaggaaagctacagccatcccatccagg
aaagcagaatactttgatgcctctgagccagtacaaaaccgagtttacaagtccttgaag
gtctggtcgatgttggcagacttggaggaaagtctaggcacttttcagtctaccaaagct
gtgtatgaccgcattattgatcttcgcatcgctactccacagatcattattaattatgcc
atgtttcttgaagagcacaactactttgaggaaagctttaaagcatatgagcgaggcatt
gctctcttcaggtggccaaatgtttatgatatctggaacacttacctgaccaagttcata
gatcgttatggaggcaagaagctggaaagagccagagatttatttgaacaagctttggat
ggctgtcctgcaaagtttgccaagactgtatatctgttatatgccaaactggaagaggag
tatggattggcgcgacatgccatggctgtctatgaaagggcaacgcaggcagtggagact
caggagagacatcatatgttcaacatctacatcaagagagcagctgaaatttatggagtg
acatacaccagagcaatttatcagaaggctattgaggtccttcctgatgagcatgcaaga
gaaatgtgtctgcgattttctgacatggagagtaaactgggtgagattgatcgagccaga
gccatctactcctactgctcccagatctgtgacccgagggtgacagctaatttctggcag
acctggaaagaatttgagatacgtcatggaaatgaggacaccatcagagagatgttgagg
atcaaacgcagcgtccaggctacctacaacacacaggtcaactttatgtcttctcagatg
ctgaaggccacaacaagctccacaggcactgtgtcagatcttgctccaggccagatggga
attgatgatatgaaaatgttggaacagaaagcacagcagctcgcagcagaagccgagcag
gacaaacccaaacccaaagaaaagatcctctttgtcaggagcgacacttctcgtagtgag
ttggctgagcttgcaaaacaggccaatcctgatgagatcaatattgatgatgacgatgaa
gatgatgatgaccaaggaccagatgaggtgcagcttgagcagaagagtgtcccaactgct
gtctttggagggcttaaggatgactga
DBGET
integrated database retrieval system
