Cololabis saira (Pacific saury): 133421604
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Entry
133421604 CDS
T09849
Symbol
rfx1a
Name
(RefSeq) MHC class II regulatory factor RFX1a isoform X1
KO
K09173
regulatory factor X 1/2/3
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
csai03000
]
133421604 (rfx1a)
Transcription factors [BR:
csai03000
]
Eukaryotic type
Other basic domains
RF-X
133421604 (rfx1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BCD_RFX
RFX1_trans_act
RFX_DNA_binding
Motif
Other DBs
NCBI-GeneID:
133421604
NCBI-ProteinID:
XP_061567240
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All DBs
Position
21:complement(22052003..22067540)
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AA seq
920 aa
AA seq
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MATSGYVGEIQPTAQTQGAPVSITPGQPDAASTPTTAPQFLAEIQTTVVTPTVVTATGQT
TPTEESTSLPAQKPSAGNQSQSTSQTQPPQTQYVTAEIQSSPTHSGNAQSTPQYIVVTVT
EGSLNSSDSVSDASPPPAVVQTGVPTQVVQQVQTAQQRSVVQATSQIPKTEPGTQLSVTS
LQPVHITQEVQQQLTSVPVQHVYTSQVQYVEGGDTNYATSTMLETVPEFFQQMTSRSSSF
PYTETPLYTQTTATQYYEGQPTSGSQASTPGTPMTVSVAAGTTGGVSMFVAQTTSATGGG
STVVTAGGTTNGEEDGTGTNGSATGSYVIQGGYMLGTSSSGAAAGNSQNYSHTARASPAT
VSITEGEESSVPSADKKVQWLLDNYETAEGVSLPRSTLYCHYLLHCQEQKLEPVNAASFG
KLIRSVFMGLRTRRLGTRGNSKYHYYGLRIKAGSSLLRLMEDQQHLAMRQQPFSQKQRLK
PVHKVEGMTNGTAAGAGQQQQQQAGSGHVDISSQVQHYQQFLDASRALPEFPDIDFQGKS
LPEGIELEHIKSFQLLYREHCEAILDVMVNLQFTLVETLWKTFWRFSQSQAGDATLAVHD
ESEKRLPKSCLVMLCKYDPVLRWSRDCDNSLYQSLVEILIPDVLRPIPSALTQAIRNFAK
SLESWLTNAMMNIPEEMVRIKVTSANAFAQTLRRYTSLNHLAQAARAVLQNTAQINQMLS
DLNRVDFANVQEQASWVCRCEDRVVQRLEQDFKLTLQQQNSLEQWAVWLDGVVSQVLKPY
QHSAAFPKAAKLFLLKWSFYSSMVIRDLTLRSAASFGSFHLIRLLYDEYMYYLIEHRVAQ
AKGETPIAVMGEFASLGRGLNQLDPDKEEEEEEEDDSEEECQELSLPPDGPMLGDESLEP
PAKLARTDQRVLFTTGSGDN
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcaggctacgtaggtgagatacagccgacagcccaaacccagggagctcct
gtttccatcacaccaggtcaacctgacgccgcctccacccctacaactgcccctcagttt
ttggcagagattcagactactgtggtaactcctactgttgtcacagccacagggcaaact
actcccacagaagaaagtacttccctccctgctcagaaaccttcagctgggaatcaatcc
cagtccacatcacagacccagccacctcagacgcagtatgtgactgcggagatccaaagc
tcccccacacactctggaaatgctcaaagcactcctcaatacatcgttgttactgtcaca
gagggttccctgaactcaagtgacagcgtgtcagatgccagtcctcctccagctgtggtt
cagacaggagttcccacacaggttgttcagcaggtccagacagcccagcagagatctgtg
gtgcaggccacctctcagattcccaaaactgagccaggcactcagcttagtgtcaccagc
ctacagcctgttcatatcacccaagaggttcagcagcagctcacatcagtaccagtgcaa
catgtgtacacaagtcaagtgcagtatgtggaaggaggagacaccaactacgccaccagc
accatgttagaaactgtcccagaattctttcaacaaatgaccagtcgttccagctctttc
ccttacacggaaactcctctgtacacccagactacggcaacgcagtattacgaaggtcag
ccaacttcaggctcccaggcctctacccctggcacacccatgaccgtctctgtggcagct
ggcaccacaggaggtgtgtctatgttcgtggcccagaccactagtgcaacagggggcggg
tccactgtagtgacagcagggggtactaccaacggggaagaggatgggacaggcactaat
ggtagtgcaacaggcagctacgtgatccaggggggttacatgctgggcaccagcagcagc
ggagcggcggctggcaacagtcagaactactcacacaccgcccgcgcctccccagccact
gtgagtattacagaaggcgaggagagtagcgtgccgtcggcagacaagaaggtgcagtgg
ttgctggacaactatgagacagctgaaggtgtaagtctgccacgctcaacgctttactgc
cactacctgctgcactgccaggaacagaaacttgagcctgttaatgctgcttcttttggg
aaactcattagatcggtgttcatgggtctacgcacaagacgcctgggcactcggggtaat
tcaaaataccactattatggactgagaatcaaggcaggctcttctcttctccgtctgatg
gaagaccagcaacatctggcaatgaggcaacagccattctcacagaaacagaggttgaag
cctgtgcataaagttgaaggaatgaccaacggcacagcagcaggagcaggccagcagcaa
cagcagcaggcggggtcagggcacgtggacatcagcagccaggttcagcattaccagcag
ttcctagatgcatccagagcccttccagagttcccagacatcgacttccaggggaagtct
ctgccagagggtattgaacttgagcacataaagagctttcagctgctgtacagagaacac
tgcgaggccatactggatgtgatggtcaacctgcagtttacgctggtggagactctgtgg
aaaaccttctggaggttcagccaaagtcaggctggagatgctacactggccgttcatgat
gagtcagaaaagcgtcttccaaagtcctgcctggtgatgttgtgcaagtatgacccagtg
ctgcgttggagtcgtgactgtgacaacagtttgtaccagagcctggtggagatcctcatc
cctgatgtcctcagacccatccccagtgccttaactcaagccattcgtaactttgccaag
agccttgagagctggctgaccaatgccatgatgaacattcctgaggaaatggtccgcatc
aaggtaacatcggccaatgcatttgctcagacgctgcgtcgttacaccagtctgaaccac
ctcgcccaggcagctcgcgcggtcctgcagaacacggctcagatcaaccagatgctgtct
gacctcaaccgtgttgactttgctaacgttcaggagcaagcttcatgggtgtgtcgctgt
gaagatcgtgtagtccagcggctggaacaggacttcaagctgaccctccagcagcagaac
tccttagagcaatgggctgtgtggcttgacggcgtagtgtcccaagtcctaaagccctac
cagcacagcgctgcattccccaaggctgccaagctcttcttactcaagtggtctttttac
agttccatggtgatcagagatctaaccctgcggagtgcagccagtttcggatcctttcac
ttgatccggctgctgtatgatgaatacatgtactaccttatagagcacagagtggcccag
gctaaaggagagacccccattgctgttatgggagagtttgccagtttaggccgggggctg
aaccagctagatcctgacaaagaggaagaggaggaagaagaggatgatagtgaggaggaa
tgtcaggagctgtcccttccccctgacggccccatgctaggagacgagtctctggagccg
cctgctaagttagccagaactgatcagagagttctcttcactacagggtcaggcgacaac
taa
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