Cololabis saira (Pacific saury): 133421971
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Entry
133421971 CDS
T09849
Symbol
mgrn1b
Name
(RefSeq) E3 ubiquitin-protein ligase MGRN1b isoform X1
KO
K10604
E3 ubiquitin-protein ligase MGRN1 [EC:
2.3.2.27
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04120
Ubiquitin mediated proteolysis
csai04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
133421971 (mgrn1b)
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
133421971 (mgrn1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
csai04121
]
133421971 (mgrn1b)
Enzymes [BR:
csai01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
133421971 (mgrn1b)
Ubiquitin system [BR:
csai04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
133421971 (mgrn1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-C3HC4
zf-C3HC4_2
zf-RING_11
Motif
Other DBs
NCBI-GeneID:
133421971
NCBI-ProteinID:
XP_061567778
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Position
21:complement(13624516..13631514)
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AA seq
549 aa
AA seq
DB search
MGSILSRRIAGVEDIDIQANSAYRFPPKSGNYFASHFFMGGEKFDTPHPEGYLFGENMDL
NFLGNRPVQFPYVTPAPHEPVKTLRSLVNIRKDSLRLVRYKDESDPLVEEGGKPKVQYSV
EFTFDADARVAITLYCQAFEEFSNGMPVYTPKDPSMVSETVHYKRGVSQQFSMPSFKIDF
TEWKEEDLNFDLDRGVFPMVIQAVVDEGDDCLGHAHVLLAAFERHVDGSFSVKPLKQKQI
VDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCNSC
ADTLRYQANNCPICRLPFRALLQIRAVRKKPGALSPVSFSPVLAQTMDHDEHSNSDSVPP
GFEPISLLEALNGLCSVSPAIPSAPLYDDINFSGGVGGESRQLSSPEHLSDGGLQKGKVS
KSPDSTLRSPSSPIQEEDEEKLSEMSDAQPHALHSSSPAPTEGTATEDVVESLSPDDEDR
MHSGGDILQDCSSEHCSLTKTESDPAGDLSLPGSSESTESLKSQSTNCSSQPLLCPTGSL
HMEDEHLNH
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgggctccatcctgagtcgcagaatcgctggtgtcgaggatatcgatatccaggccaac
tcggcctatcgatttcccccgaaatctgggaattactttgccagccatttcttcatgggg
ggagagaaatttgacacacctcatccagagggatacctctttggggaaaacatggacctg
aattttcttggaaataggccagtgcagtttccgtatgtgacgcctgcacctcatgaacct
gtgaaaaccttgaggagtcttgttaacatcaggaaggactctttgcgcttagtgaggtac
aaggatgaatctgatccgttggtggaggaaggtggaaaaccaaaggttcagtacagtgtg
gagttcaccttcgatgccgatgctcgggtagccatcaccctctactgccaggcgtttgag
gagttttctaacgggatgcctgtgtacactccgaaggatccatccatggtgtctgaaacg
gtgcattacaagcgaggtgtgagccagcagttctccatgccatctttcaaaattgatttc
accgagtggaaagaggaagatctgaactttgacctagatcgaggagtgtttcccatggta
atccaggccgtggttgatgaaggggatgattgtcttggtcatgctcatgtactgttggca
gcctttgaaagacatgttgatggcagtttctccgtcaagccactgaagcagaagcaaatt
gtggaccgtgtgagctacctcttacaggagatctatgggatcgagaacaaaaacaaccaa
gaaactaagccttctgatgacgagaacagtgacaacagcaatgagtgtgttgtttgtttg
tccgacctgcgagatacactcatcctgccctgcagacatttgtgtctctgcaactcctgc
gcggacactctgcgttaccaggccaacaactgtcccatctgcaggctgccttttagagcc
ttgctgcagatcagagctgtgagaaaaaagcctggagctctttctcccgtttccttcagt
cccgttcttgcacagactatggaccacgacgagcattcaaactctgattcggttcctcct
gggtttgaacccatctcactgttggaggccctgaacggtctgtgctcagtgtctcctgcc
atcccgtccgcccccctgtatgatgacataaacttctctgggggtgtgggaggtgaaagc
cgacagctgagctcaccggagcatttaagtgatggaggtctgcagaaaggcaaagtcagc
aagtcacctgacagcaccctcagatctccatcctctcccatccaggaggaggatgaggag
aaactgtcagagatgtctgacgctcagccacacgcacttcactccagtagccccgcacca
accgagggcacagcgaccgaggatgtggtggaatctctgtccccagatgacgaggacagg
atgcattctggaggagacatcctgcaggactgcagcagtgaacactgcagcttgaccaaa
acagagagtgacccagcgggtgatctgtccttgcctggatcatcggagtcaacagaaagt
ctgaaaagtcagagcacaaactgctccagccagcctcttctgtgtcccacggggagcctt
catatggaagacgaacacctcaaccactga
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