KEGG   Cololabis saira (Pacific saury): 133422079
Entry
133422079         CDS       T09849                                 
Symbol
alyref
Name
(RefSeq) THO complex subunit 4
  KO
K12881  THO complex subunit 4
Organism
csai  Cololabis saira (Pacific saury)
Pathway
csai03013  Nucleocytoplasmic transport
csai03015  mRNA surveillance pathway
csai03040  Spliceosome
csai05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:csai00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    133422079 (alyref)
  09122 Translation
   03013 Nucleocytoplasmic transport
    133422079 (alyref)
   03015 mRNA surveillance pathway
    133422079 (alyref)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    133422079 (alyref)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:csai03019]
    133422079 (alyref)
   03041 Spliceosome [BR:csai03041]
    133422079 (alyref)
Messenger RNA biogenesis [BR:csai03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     133422079 (alyref)
    TREX complex
     133422079 (alyref)
Spliceosome [BR:csai03041]
 Complex C
  Other components
   EJC/TREX
    133422079 (alyref)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    133422079 (alyref)
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 133422079
NCBI-ProteinID: XP_061567966
LinkDB
Position
21:24762027..24764992
AA seq 271 aa
MADKMDMSLDDIIKQNRQTRGGGRGGRGRGRGGALGGRGGGPGRLGGGGGGGGGGFGGRG
GGSGPMRSRQNLSRARGRPTPYSRPKQLPDKWQHDMFDNGFSGFNGAAGGGGGAGVETGG
KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERRADALKAMKQY
NGIPLDGRPMNIQLVTSQIDTQRRPMQGLNRGGGGMNRGRGFGMQRGRGGRGAGGARGRG
RGGRGATNKQPLSAEELDAQLDAYNARMDTS
NT seq 816 nt   +upstreamnt  +downstreamnt
atggcggataagatggatatgtctctagacgacattatcaagcagaacaggcagactaga
ggcggaggccggggcgggagaggccgcggccgcggaggcgcgctgggcggccgcggggga
ggaccaggacggctcggtggcggcggcggcggcggcggcgggggatttggaggccgaggc
ggcggatccggccccatgaggagccggcagaacctgagccgcgctagaggcaggccgacg
ccgtacagcaggcctaaacagcttccggacaagtggcagcacgacatgttcgacaacggc
ttcagcggcttcaatggtgctgctgggggcggcggaggagccggcgtggagactggaggg
aagcttctcgtgtccaatctggactttggggtctcagacgcagacattcaggaacttttc
gcagagtttggaaccctaaagaaagctgctgttcattatgaccgatcaggaaggagcctg
ggaaccgctgatgttcactttgaaaggagagcagatgccctaaaggccatgaaacagtac
aatggcatcccactcgatgggcggcctatgaacatacaactcgtcacatcacagattgac
acacagagacggcctatgcagggtctgaacagaggtggcggaggcatgaacagaggtcgc
ggcttcggcatgcagaggggtcgaggaggacgtggtgcgggcggtgcccgaggacgagga
aggggtggtcgcggtgccactaacaagcaacccctatcagcagaggagcttgatgctcag
ttagacgcctacaacgccagaatggacaccagctaa

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