Cololabis saira (Pacific saury): 133422420
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Entry
133422420 CDS
T09849
Symbol
tnrc6c1
Name
(RefSeq) trinucleotide repeat-containing gene 6C protein isoform X1
KO
K18412
trinucleotide repeat-containing gene 6 protein
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133422420 (tnrc6c1)
03036 Chromosome and associated proteins [BR:
csai03036
]
133422420 (tnrc6c1)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133422420 (tnrc6c1)
Chromosome and associated proteins [BR:
csai03036
]
Eukaryotic type
Gene silencing
piRNA pathway
133422420 (tnrc6c1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TNRC6-PABC_bdg
M_domain
Ago_hook
UBA_7
UBA
RRM_1
RRM_occluded
THOC7
UBA_NBR1_C
Motif
Other DBs
NCBI-GeneID:
133422420
NCBI-ProteinID:
XP_061568386
LinkDB
All DBs
Position
21:21903205..21949427
Genome browser
AA seq
1864 aa
AA seq
DB search
MEDKKKKKQEEKKKKDTAQKKATEQITKVPDSAKLDPTPPLPPANPSAIPSASPSSGNGK
RAPSGGQPQTAQQPQTPLQQRYPPREVPPRFRQQEQKQLLKRGQPLPSGTLPLITTGRPA
TSEPAAATVAINSSPSCSSSSSASLPTELPSQSGHGAQYDNSLWGHLPANRSATSAGSST
SLSGWDQLIIDQKDTEAWPSITLSQSQVPPGGCPLDTDPGHLTSSSSSTSSSCSAVSMAT
GANSQTGHFPANHLSKANSGSSPANHAGTSILSSQVTSNRSWGSGSGPSHCPTQSSLGNE
GKGDNPVGGGGSRGWGSSSSSSTTNFNLNLNPNANPSAWPMLGHDGGGTGGGSSGGANTI
SPPQSTPNLCNPPGPPPTQTSTCSGANTSSKSSGIGSAWGTILASDVSEPAQSTNVSFSS
EPQNLKTDGPNHTNKQEPPSPIQNLSGWGNAPIGLGSMGQPPPGGLQVNGEDGNSVWGNN
GNSKQKSSKEGPGWDSAWGHGGGGTGNSGGWGEQSGGDWGKQHTEETQGGWDAPSSPPQD
SQAGPWSRAVSTAGASEGSSDSMEGHPRRRDHLSRDNPVPLLPAQDLDPRVLCNTGWGQT
PVRQHTTWDMEHTKHKNEVSAESWGSSKATPSDAQGSANTNTGPMQRTDHGSKNDVPGSQ
GASGWGGSMAATNQPSSGWREPSNNIKHPVGPSGWGNPTTAGPTTNIPKNGGQPWGEEKS
AGWDDSHSKSTSQGWGEQPKAPHSWGKSGGSNNTGDWGEPEESKKNPTNPDWENQRGWRM
SNPGSGISTAGESGGWCESAPQRPSGPPQGWGGKPQEGPSGNSGGGTMGSWGGSCTVKQP
GNWGGTGSSSKQEHKAEATGWEEPSPPSIRRKMEIDDGTSAWGDPGTYSKAVNLWDKNSS
VMSQAKVPTGGNNPPGPTNNHPPHAHNHPYHGPPAPLQNNNQNTQNPGPTSGPMDPIVQH
QSGPSHSRGPMMAQGWGEIPSSHPKSESTWGDPAPSPVSVDNGTSAWGKPTGSSGWGDGN
PDSYGRGNPTMTSTSCKPAPKPMQDGWGGGGGGEELSLSGGQWDAEEGDMWNSNASQETN
NSNSWGNASKKGPQKVKVPGKQEDAWIMNRLIKQLTDMGFPRDPAEDALKSNNMNLDQAM
SALLEKKIELDKRGMGIGGHDYNNGLINKPMSCPRPPLLSKDPSADPRLPYMDKMQSGMF
GGGGAAQARAMQQPQPPPQPPVPPLSSSQPSLRAQVPQFLSPQVQAQLLQFAAKNIGLNP
ALLTSPINPQHMTLLNQLYQLQLAYQRLQIQQQMLQAQRNVSGPIRQQEQQVARTINNMQ
QQIQQHQRQLAQALLMKQQQQPPTHSGLHPGGAKSSLDSFPGHPQTSGLPDLQTKEPQSS
PATYSPYALSGLNPNMNVMEVGSLSMKEPPQPQSRLSQWTHPNSIESLSGNSSPLEPNLG
KHGANLGPPGKPPQLDDSYSPYNLISNSESPTSPLVPPDSWGQGKSSSDKISNGTNINWP
PEFCPGVPWKGLQNIDPETDPNVTPGSVPSGPTINTNIQDVNRYLLRDRSGSSSPTSSQN
EALPPSTDWPVSAYTSSFSLSSPEMDDAGKLSEMKSTWSPGPISHSQASLSHELWKVPQG
PRSSNTAPSRPPPGLTNPKPSSTWGGNSLGLAQGWSSSYTTAGTTWSTDSATRTSSWLVL
RNLTPQIDGSTLRTLCMQHGPLITFHLNLTQGNAVVRYSSKDEAAKAQKSLHMCVLGNTT
ILAEFAGEEEVNRFFAQGQSLGGTTSWQATSGTNQNRMGGAGSGASHPIGHSPHWNNNSN
GASSGSSSSLGACGTKTGGELLWGGVQQYSSLWGPPSGEEGRVMGSPTPINTLLPGDLLS
GESM
NT seq
5595 nt
NT seq
+upstream
nt +downstream
nt
atggaagataagaaaaagaaaaaacaagaagagaagaaaaagaaagacactgctcagaaa
aaggccacagaacaaataaccaaagtgccagactctgccaagctcgaccccacccctcct
cttccccccgccaaccccagtgccatcccatccgcatccccaagcagtggaaatggcaag
cgcgccccctccggaggccagccgcagacagcacagcagccacagactccgctccagcag
cgctacccgcccagagaagtgcccccacgctttcgccaacaggagcagaagcagctgttg
aaaaggggccagcctctgccctccgggaccctgcctctcatcaccacgggacgtcccgcc
actagcgaacccgcagcagcaacagtagccataaactcctctccatcttgctcctcttcc
tcctcagccagcttgcccacagaactgccctcacagagtggccacggagcccagtatgat
aattccctctggggacacctgccagccaatagaagtgccacaagtgctggatcttccact
agtctcagtggctgggatcaactaataattgaccagaaggacacagaggcttggccttct
attaccctcagccagagccaggtgcctccgggaggatgccctttggacactgaccctggt
cacttgaccagcagcagcagtagtactagcagtagttgtagtgcagtgagtatggccaca
ggagccaacagtcagacaggccacttccctgccaaccaccttagcaaagccaacagtgga
tctagccctgccaatcatgctggaaccagcatcctctccagccaggttacaagcaaccgt
agttggggctctggatctggaccttcccactgccccacacagtcctcattggggaatgaa
gggaaaggtgataacccagtgggaggaggaggcagtagggggtggggttcctcttcatca
tcctccaccaccaactttaacttgaacctaaaccctaatgccaatccatctgcctggccc
atgttggggcatgatgggggtggcactgggggaggcagctcagggggagccaacaccatt
tcacctcctcaatctacacccaacctctgtaatccacctggccccccaccaacccaaacc
agcacctgttctggagccaacactagcagcaagtcctctgggattgggagtgcatggggt
accattttggcttctgacgtgtcagagcctgcccagtctacaaatgtgtctttcagttca
gaacctcagaaccttaaaactgatggaccaaatcacactaataagcaagaacctcccagt
ccaattcaaaacctgtctggttggggaaatgcacctataggcttgggttctatgggacag
ccaccaccaggaggtttgcaagtcaatggagaagatggtaactctgtgtggggtaacaat
ggtaactcaaagcaaaaatcctcaaaggaaggacctgggtgggattctgcttggggccat
ggaggtggtggaacaggaaactcaggaggctggggtgaacagtctggtggagactggggg
aagcagcacactgaagagacccagggcggttgggatgcacctagctctcctccccaggat
tcgcaggctggtccttggagccgagctgtgagcacagctggtgccagtgaagggagcagt
gacagcatggaaggacatccccggcggagagaccacttatccagagataatccagttccc
ctgctgcctgcccaggatctggatcccagagtgctgtgcaacactggctggggacagaca
cctgttcgccagcacaccacatgggatatggaacataccaaacataagaatgaagtaagc
gctgaatcttggggttccagcaaagccactccaagtgatgcccagggctctgcaaatact
aacacgggccccatgcagaggactgaccatgggagcaaaaacgatgtgcctggttctcag
ggagcttctggttggggtggaagcatggctgctaccaaccagcccagctctggctggcga
gagccatccaacaacattaagcatcctgttggcccaagtggctgggggaaccctacaaca
gcaggccctaccaccaacatacccaagaatggtggccagccttggggagaggagaaatca
gctggatgggatgattctcacagcaagtcaacttcccagggctggggagagcaacccaaa
gcaccccactcctggggcaagagtggagggagcaataacacaggggactggggagaacca
gaagagagcaagaaaaatccaactaaccctgactgggaaaaccagcgaggctggagaatg
tctaatccaggatctggaatatctacagctggagaaagtgggggctggtgtgagtcagca
cctcagcgccccagtggccctccgcaaggttggggtggcaagcctcaggaaggccctagt
ggcaatagtggaggagggaccatgggctcttggggtggatcatgcacagtgaagcaaccc
ggcaactggggtggtaccggtagtagtagtaaacaagaacataaagccgaggctacaggt
tgggaagagccgtctccgccttcaatccgacgtaaaatggagattgatgatggaacctca
gcttggggggaccctggtacctacagcaaggctgtcaatttgtgggataagaacagttca
gtaatgtcccaggctaaagttcccacaggaggcaataaccccccaggacccactaacaac
caccctccccacgctcacaatcacccttatcacgggccacctgcacctttacagaacaat
aaccaaaacacccaaaacccaggccccaccagtgggccaatggatcctatagtgcaacac
caatctggaccgtctcacagcaggggtcccatgatggctcaaggttggggagagataccc
agctcccacccaaaatcagagagtacttggggagatccggcaccctctccggtcagtgtg
gataacggcacgtcagcgtgggggaaaccgactggaagctcgggctggggagatggaaac
ccagacagctacggcaggggaaacccaacaatgacatctacatcttgcaaacctgcaccc
aaacctatgcaagatggatggggaggaggaggaggaggggaagagctcagtctttcaggt
ggtcagtgggatgcagaggagggagacatgtggaacagcaatgcctcccaggagaccaac
aactccaactcctggggcaatgcatccaaaaaaggaccacagaaggtgaaggtcccaggg
aagcaggaagatgcatggattatgaatcgtctcattaaacagctgacagatatgggattc
cctcgggatccagctgaggatgctttgaagagcaacaatatgaacttggatcaggccatg
agtgccctgctggagaagaagattgagctggacaagcgtgggatgggcataggcgggcac
gactacaacaacgggctcatcaacaagcccatgagctgccctcggcctccgcttctttcc
aaagacccctcagcagatccccgcttgccctacatggataagatgcagagtggaatgttt
ggcggtggtggagcagcacaagcccgggctatgcagcagccgcagccacctcctcagcca
ccagtgccgcctctcagctcctctcagcctagtctacgcgctcaagtgcctcagtttctc
tcccctcaggttcaagcacagctcttacagtttgcagcaaaaaacattggtctgaatcct
gcacttttaacctcaccaataaatcctcaacatatgacccttctcaatcaactgtaccag
ctgcaactggcgtaccagcgtttacaaattcaacagcagatgttgcaggcacagcgcaat
gtttctggccccattcgacaacaagagcagcaagttgcacgtacaatcaataacatgcag
cagcagatccaacagcaccagcgtcagctggcacaggctctgctgatgaaacaacagcaa
cagccccccacccactcgggcctgcatcctggtggagccaaatctagcctggattcgttt
ccaggtcacccccagacttcaggcctccctgatctgcagaccaaagagccgcagtcgtct
cccgccacctacagcccctacgctctctctggactgaatccaaacatgaatgtaatggag
gtgggaagtctgtctatgaaggaaccacctcaaccccagtcacgcctgtcacagtggacg
caccccaactccatcgaaagcctctctggaaactcctctcctctcgagcccaacctggga
aagcatggtgccaatctgggccctcctgggaagccccctcagctggacgactcgtacagc
ccctataacttgatatccaactcagagtctcccactagccccctggtccctccagacagt
tggggacagggcaagagcagcagtgacaagatctccaatgggaccaatatcaactggcca
ccggagttttgccccggtgtgccctggaagggcctccaaaatattgaccctgagactgac
ccgaatgtgactccgggcagcgtccccagcgggcccaccatcaacaccaacatccaagat
gtcaaccgctacctgctccgggacaggagtggaagctcctctcccacttcatctcagaac
gaggctctgcctccgtccactgattggcccgtcagtgcctacactagttcgttcagtctg
tcgtccccggagatggacgatgcaggtaaactctcagagatgaaatctacctggtctcca
gggcccatctctcacagccaggcgtctctgtcccatgagctgtggaaggtcccccagggt
ccccggagcagcaacacagccccttctcgcccaccgcccggcctcactaatccaaagcct
tcatccacctgggggggcaattctctgggtctggcccagggctggagcagctcttacact
acagcaggtaccacgtggagtacagacagcgccaccaggaccagtagctggctggttctg
aggaacctcactccacagattgatggttcaactctgcgtacactgtgcatgcagcacggc
cccctcatcacattccacctaaacctgacacagggaaatgcagtggtgcgctacagctcc
aaggacgaagctgccaaggcccagaagtccctgcatatgtgcgtgctcggaaacaccacc
atcctcgcagagtttgccggggaagaggaagtgaatcgcttctttgcacagggccagtcg
ctcggcggaacaaccagctggcaggccacgtcaggcaccaatcagaaccggatgggcgga
gccgggtccggagcctcccatcccatcggccactctccccactggaacaacaacagcaac
ggcgccagcagcggcagtagcagcagcctcggagcgtgtggaacaaagacgggaggagag
ctgctctggggcggcgtccagcagtattccagcctgtgggggcccccgagtggagaggag
ggacgggtcatggggagccccacgccaatcaatacactgcttcctggtgacctgctgagt
ggagagtccatgtag
DBGET
integrated database retrieval system
