Cololabis saira (Pacific saury): 133422701
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Entry
133422701 CDS
T09849
Symbol
dhx58
Name
(RefSeq) probable ATP-dependent RNA helicase DHX58
KO
K12649
ATP-dependent RNA helicase DHX58 [EC:
5.6.2.6
]
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04622
RIG-I-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09150 Organismal Systems
09151 Immune system
04622 RIG-I-like receptor signaling pathway
133422701 (dhx58)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
csai04054
]
133422701 (dhx58)
Enzymes [BR:
csai01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
133422701 (dhx58)
Pattern recognition receptors [BR:
csai04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
133422701 (dhx58)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RIG-I_C-RD
RIG-I_C
ResIII
DEAD
Helicase_C
SWI2_SNF2
AAA_19
AAA_22
Motif
Other DBs
NCBI-GeneID:
133422701
NCBI-ProteinID:
XP_061568721
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All DBs
Position
21:16782006..16788713
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AA seq
681 aa
AA seq
DB search
MADFGLYGYQEEVVERAIDGENIIIWLPTGGGKTRASVYVAKRHLETKTNAKVMVLVNKV
HLVDQHYTKEFKPHLGQSHKLVKVSGDSEEKDFFGLVVQSSDLIICTAQILYNAMINTEE
AKHVELSDITLLIIDECHHTHKESVYNQIMRYYLERKLKGERPLPQILGLTASPGTGGAK
SLQNAVEHVLQICANLDSAIVSAKTYAPELKEKVPRPIKTFDIVEKRLLDPFGDHLKEMM
ELIQGFMDLPPDVKLRECGTQEYEADVVVLEQRGVRENNRVLAQCALHLRQYNDALLIND
TLRMMDAYGSLEDFYNTKFTTAIDGTDFFLVGLFQENQVELRKLAADPRFENLKMAKLES
TLLKQFGPAVQSKGILFCKTRKTTHCLSDWVQNNDALQSAGIKSAVLTGAGNGITYMTQH
EQVDTIRNFRKGTLNLLISTSVAEEGLDIPECNLVVRYGLLTNEIAQQQASGRARARESQ
YSVVAQAGGREVRRELLNECLEELTGKAITRVQSLSPQDFRRKIARLQTEEIIRKKVSEK
QKVEKKSKYAASSVQLLCRNCFHPVAWASDIKLLENAHFVNINPDFENNYKVGGQVMLPK
TFEDWEPGCTISCKNGQCSMNWGFQMKYKKIALLPNLAIKNFALETPDGRVTAKKWKDVP
FMVEDFSFEEYCQNVLHDFLD
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atggcagattttggactgtatggttatcaggaggaggtggttgaaagggcgatcgacgga
gaaaacatcataatttggctgccaacaggaggcggaaagactcgagcttccgtgtatgtg
gccaaaagacacctggagaccaaaaccaacgctaaagtgatggttctggtcaacaaggtt
caccttgtcgaccaacattacaccaaagagtttaagcctcacctgggtcagagtcataaa
ctggtgaaggtcagtggagacagtgaggagaaggacttcttcgggttagtggtccagagc
agtgatctgatcatctgcacggcacagattttgtataatgctatgatcaacacggaggag
gccaaacacgtggagctctcagatattactctgctgataatcgacgagtgtcaccacacc
cacaaggagtcggtgtacaaccaaataatgagatattatctggagaggaagctgaaggga
gagcgaccgttgccacagattctgggtctcacggcgtcgccggggacgggcggcgcgaag
agcctgcagaacgccgtggagcatgtgctgcagatttgtgctaacttggactcagccata
gtctcagctaaaacctacgcccctgaactgaaggagaaggtacccagacccatcaagacc
tttgacattgtggagaaaagactcttggatccatttggagatcacctgaaggagatgatg
gagctgatccaagggttcatggaccttcctcccgacgtcaaactcagagagtgcggtaca
caggaatatgaggccgatgtggtagttctagagcagcgaggagttcgagagaacaacaga
gtgctggcacaatgtgcgctccacctaaggcagtacaacgacgctctgctaatcaatgac
accctacgaatgatggatgcctatggctccctggaggacttttacaacaccaagttcacc
acggccattgatgggacagacttctttctggtgggactttttcaagagaaccaggtggag
ctgaggaaacttgcagcagatcctcgctttgagaacctgaagatggccaaacttgaaagc
actctgctgaagcagttcggccccgccgtccagtcaaaggggatcctcttttgtaaaacc
cgcaaaactactcactgcctctccgactgggtccagaataacgatgccttgcaatcagca
ggcatcaagtcagccgtcctcactggggctggcaacggcatcacgtacatgacacagcac
gagcaggtggacactattcgcaatttccgcaagggcactctcaacctcctgatctccacc
agcgtggctgaagaaggcctcgacatccctgaatgcaacctggtggtgcgctatgggctg
cttaccaatgagatcgcccagcagcaggccagtggccgcgcccgagcacgggagagccag
tattcagtggtcgcccaggcggggggccgggaggtccgccgagagctactcaatgagtgt
ctggaggagctgacagggaaagcgatcacccgtgtccaaagtttgagcccccaagacttc
cgcagaaagatagcaaggctgcaaacagaggaaatcatcagaaagaaagtttcagagaaa
cagaaagttgagaaaaagagtaagtatgctgcttccagcgtccagctcttgtgtcgaaac
tgtttccatccagtggcctgggccagtgacattaaacttctggaaaacgcccacttcgtc
aacatcaacccggactttgagaataactacaaagtcggtgggcaggtgatgctaccgaag
acctttgaggactgggagcccgggtgcaccatcagctgcaaaaacggccaatgcagcatg
aactggggatttcaaatgaagtacaagaagattgccttgctgccaaatctagccattaag
aactttgccctggagactccagacgggagggtgacggcgaagaagtggaaggatgttcct
tttatggttgaggacttcagctttgaggagtactgccaaaacgtcctccatgactttctt
gactaa
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