Cololabis saira (Pacific saury): 133422918
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Entry
133422918 CDS
T09849
Symbol
vps41
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai04140
Autophagy - animal
csai04142
Lysosome biogenesis
csai04148
Efferocytosis
csai05132
Salmonella infection
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome biogenesis
133422918 (vps41)
04140 Autophagy - animal
133422918 (vps41)
04148 Efferocytosis
133422918 (vps41)
09160 Human Diseases
09171 Infectious disease: bacterial
05132 Salmonella infection
133422918 (vps41)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
csai04131
]
133422918 (vps41)
Membrane trafficking [BR:
csai04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
133422918 (vps41)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
zf_RING_Vps8_fungal
VPS18_solenoid_2nd
Beta-prop_HPS5
Beta-prop_RIG_2nd
WD40_Prp19
WD40_WDHD1_1st
TPR_7
Beta-prop_EML_2
Beta-prop_IFT122_1st
Vps39_1
TPR_19
zf_RING_Vps8
Beta-prop_THOC3
TPR_YpiA
Beta-prop_WDR3_1st
Beta-prop_IFT140_2nd
TPR_17
TPR_PEP5_VPS11
CFAP251_N
Helicase_PWI
VPS18_RING_C
zf-Vps39_C
Motif
Other DBs
NCBI-GeneID:
133422918
NCBI-ProteinID:
XP_061568938
LinkDB
All DBs
Position
22:complement(21991474..22009722)
Genome browser
AA seq
854 aa
AA seq
DB search
MAEVGEQERKPSEEFTDESEEEDSEEEPKLKYERLSNGVTEILQNDAASCMTVHDKFLAL
GTHFGKVFLLDIQGNVTQKFEISSVKINQISLDESGEHVGICSEDGKVQVFGLYTREGFH
DNFDFPIKVVALHPQFSRSNYKQFVTGGNKLLLYERNWLNRWKTLVLHEGEGTITNIQWR
ANLIAWSNNVGVKIYDISTKQRITNVLRDNANLRPDMYPCSLCWKDNTSLIVGWGTSIKI
CVVKERNPTEMRDLPSRYVEIVSAFDTEFFICGLAPLADQLVTLYFVKENSDQMEEEFRA
RPRLDIIQPLPENCEEISSDALTVRHFQDNECRDYRLEHSEGESLFYIISPKDIVVAKER
DQDDHIDWLLEKKKYEEALMAAEISFKNIKRHDVQKIGMAYINHLVEKGDYDGAARKCQK
VLGKNMDLWENEVYRFKTIGQLKAISQYLPRGDLRLRPAIYEMILHEFLKTDYEGFATLV
REWPGELYNNMAIVQAVTDHLNRDPTNSTLLTTLAELYTYDQRYDRALEIYLRLRHKDVY
QLIHKHNLFSSIEDKIVLLMDFDKEKAVDMLLDNEDKISIDRVVEELADRPELLHVYLHK
LFKRDHHKGQKYHERQIGLYAEYDRPNFLPFLRDSTHCPLEKALEICQQRNFVGETVFLL
SRMGNCRRALQMIMEELEDVDKAIEFAKEQDDAELWEDLISYSIDKPPFITGLLNNIGTH
VDPILLIHRIKEGMEIPNLRDSLVKILHDYNLQILLREGCKKILVADSLSLLQKMHRTQM
RGVRVDEGNICESCHTTILPSDIAKSFSVVVFHCRHMFHKECLPSSGAIPCLQFCNICSA
KRRGPGSGILEMKK
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagtgggggagcaggaaagaaaaccgagtgaggagtttacagacgagtctgag
gaagaggacagcgaggaggagcccaagctgaagtatgagagactctccaatggcgtgact
gaaatcctccagaacgatgcagccagctgtatgaccgtccacgacaagttcctcgcctta
ggcacccactttggaaaggtctttctgctggacattcaaggaaatgttactcagaagttt
gaaattagttcagtgaagatcaaccagatcagtctggatgaaagtggagagcatgtgggc
atctgctccgaggatgggaaggtccaggtatttggtctttatacgagagagggcttccat
gacaactttgactttcccatcaaagtggtggcactacaccctcagttcagcagatccaac
tacaaacagtttgttaccggaggaaacaagctgcttctgtacgaaagaaactggttgaat
cgctggaagactttggttttacatgaaggtgaaggtacaatcaccaatatccaatggaga
gcaaacctgattgcctggtccaacaacgtgggagtaaaaatctatgacatcagcacaaag
cagcggatcaccaatgtgttgagagataacgccaatctgaggcctgacatgtacccgtgc
agcctgtgctggaaagacaacacctctctcattgttggatggggaacttctataaagatt
tgtgttgtgaaagagcgaaatcccactgaaatgagagatctgcccagccgctatgtggaa
atagtgtctgcttttgatacagagttcttcatctgtggtttggcaccgctggccgaccag
cttgtcaccctgtactttgtgaaggagaactctgaccagatggaagaggagtttcgcgca
cggcctcgtctcgatatcatccagcctctgcctgagaactgcgaggagatctcttcagac
gctctgactgtacgacacttccaggacaacgagtgcagggactaccgccttgaacattcg
gaaggggagtcactcttctacattatcagtcccaaagacattgtcgtggccaaagagcga
gaccaggatgaccatattgattggttgctcgaaaagaagaaatatgaggaggcactgatg
gctgcagaaatcagcttcaaaaacatcaagagacacgacgttcagaaaattggaatggct
tatattaatcatttagtggagaagggcgactatgatggtgccgcaaggaagtgtcaaaag
gttcttgggaaaaacatggatctgtgggagaatgaagtgtacagattcaagaccatcggg
cagttgaaggccatcagccagtatttaccaagaggagatctgcgtctcagaccggccatc
tatgaaatgatcttgcacgaatttcttaaaactgactacgagggctttgccacactggtc
cgggagtggccaggagagctttacaacaacatggccatcgttcaggccgtcacggaccac
ctgaacagagatcccaccaacagcacgctcctcaccacgctggcggagctgtacacgtat
gaccagcggtatgacagagccttggagatctacctgagactgaggcacaaggatgtttac
cagctgatccacaaacacaaccttttctcctccatagaggacaagatcgtcctcctcatg
gactttgacaaggagaaagctgtcgacatgcttctcgacaacgaagacaaaatatctatt
gacagggtggtggaagaactagcagatagacctgagctcctgcacgtgtatctccataaa
ctgttcaaacgagatcaccacaaaggccaaaagtaccacgagagacagataggcttgtat
gccgagtatgaccgaccaaacttcctgcctttcctgagggatagcacacactgtcctctt
gaaaaggctcttgagatttgccagcagaggaactttgtaggggagactgtcttcctgctc
agcaggatgggcaactgcaggagagccctgcagatgatcatggaggagctggaggatgtg
gacaaagccatagagtttgctaaagagcaggacgatgcagagctgtgggaggatctcatc
tcttactccatcgacaagccaccgttcatcaccggcctcctcaataacatcggcactcac
gttgatcccattctgctcatccaccgcatcaaggaaggcatggagatccccaacctccga
gattcacttgtgaaaatcctccatgactacaatctacagattcttttgagagaaggatgc
aagaaaatcctggtggccgactccctctccctgctccagaagatgcatcgaacacagatg
agaggagtcagggtggatgaggggaacatctgtgaatcttgtcatactacaatattacct
tcagatatcgccaaatccttcagtgtggtggtgtttcactgccggcacatgttccacaag
gagtgtttaccgtcctcgggagcgatcccttgcttgcagttttgtaacatatgcagtgcg
aagaggcgagggcctggaagtggaatccttgaaatgaaaaagtaa
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