Cololabis saira (Pacific saury): 133422920
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Entry
133422920 CDS
T09849
Symbol
lsm5
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm5
KO
K12624
U6 snRNA-associated Sm-like protein LSm5
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03018
RNA degradation
csai03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
133422920 (lsm5)
09123 Folding, sorting and degradation
03018 RNA degradation
133422920 (lsm5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133422920 (lsm5)
03041 Spliceosome [BR:
csai03041
]
133422920 (lsm5)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
133422920 (lsm5)
mRNA degradation factors
5'-3' decay
Lsm complex
133422920 (lsm5)
Spliceosome [BR:
csai03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
133422920 (lsm5)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
LSM12_LSM
Motif
Other DBs
NCBI-GeneID:
133422920
NCBI-ProteinID:
XP_061568940
LinkDB
All DBs
Position
22
Genome browser
AA seq
91 aa
AA seq
DB search
MAATQGTNPSQLLPLELVDKCIGSRIHIVMKTDKEIVGTLLGFDDFVNMVLEDVTEFEIT
PEGRRITKLDQILLNGNNITMLIPGGEGPDV
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atggcggccactcaagggacgaacccgtcacagttgctcccactcgagctggtggacaaa
tgtatcggctccaggattcacatcgtcatgaaaaccgataaagaaatcgtcggcacgctg
ctgggtttcgatgactttgtcaacatggtgctggaggatgtaacagaatttgaaatcacg
ccggagggaaggaggataaccaaactggatcagatccttctcaacggcaacaacatcacc
atgctcatccccggtggagaaggaccggacgtgtag
DBGET
integrated database retrieval system
