Cololabis saira (Pacific saury): 133422943
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Entry
133422943 CDS
T09849
Symbol
trpc1
Name
(RefSeq) short transient receptor potential channel 1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133422943 (trpc1)
Ion channels [BR:
csai04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133422943 (trpc1)
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
133422943
NCBI-ProteinID:
XP_061568984
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Position
22:19887314..19903303
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AA seq
795 aa
AA seq
DB search
MHISVWPYSLSVVMAALYQGTDSSSPDKFMALKDVREVKEETTLDEKLFLLACEKGDYYM
VKKLLEENQHGELNINSMDVLGRDAVTIAIENENLDILQLLLEHGCQATDALLVAIDSEV
VGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLKQD
ISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPALIMLTEEDPILRAFELSA
DLKELSLVEVEFRNDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSSEDTVDKRGLLE
ERMNLSRLKLAIKYNQKEFVAQSNCQQFLNTVWFGETASYRRKHTCLKIATVLSVAMLWP
LLSICYLLVPRSRFGQIIHTPFVKFIIHSASYFSFLLLLNLYSLVYNEGKKNTMGPPLEM
IDFLLIVWIIGMVWSDVKRLWYEGLEDFLDESRNQLSFVMNSLYLATFALKIVAHSKFKN
EQDERKNWDAFHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGKFL
GLFLLVLFSFTIGLTQLYGKDHKNPDKKSPKDCEGIFCQQQSNDAFHTFMGTCYALFWYI
FSLAHVALFVTRINYTEELRSFVGAMIIGTYNIVVVIVLTKLLVAMLHKSFRQIANHEDK
EWKFARAKLWLSYFDDKCTLPPPFNILPSPKTICYLVTSLRKWICSHTTKGKMKRQNSLK
EWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNEMRDL
LGFRTSKYAMFYPRS
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgcacatcagtgtctggccgtactcgctctccgtcgtgatggcagccctgtaccagggc
acggactcgtcctccccggacaaattcatggccctgaaagacgtgagagaagtgaaggag
gaaaccacgctggacgagaagctcttcctgctggcatgcgagaaaggggactattacatg
gtgaagaagctgctggaggagaaccagcatggtgagctcaatatcaactccatggacgtg
ctgggccgagacgccgtgaccatcgccatcgagaatgagaacctagacatcttgcagctc
ctgcttgaacatggctgccaggcgacggatgccttgttggtggccatagactcagaggtg
gtgggagctgtggacatcctcctcaaccacaggccaaggcgatcttccaagccttccatc
gctaaactaatgcagcggatccagaaccctgagtattccaccaccatggacgtagctccg
gtcatcctggcagcacacaggaataactacgagatcttaactatgctgctgaaacaggac
atctctcttccccggcctcacgccgtcggctgcgagtgcacattatgcaacgctaaaaac
aagaaggacagcttgcgacactccaggttccgtctcgacatctaccgctgcttggccagc
cccgctctcatcatgctgacggaggaagatccgatactgcgagcgttcgagctgagtgca
gacctgaaggagctcagcctcgtggaggtggagttccggaatgactatgaggagctggca
aagcagtgcaagatgtttgccaaggacctgctggctcaggctcgaaactctcgagagctc
gaagtgattctcaatcacacgtccagcgaggataccgtggataagagaggcctgctggag
gagcgcatgaacctcagccgactcaaacttgccatcaagtacaaccagaaggagtttgtg
gctcaatccaactgtcagcagttcctcaacactgtctggtttggagagacggccagctac
cggcgcaaacacacctgcctaaagatcgccacggtcctgagcgtggcgatgctctggccg
ctgctctccatctgctaccttctggtcccacgctctcgattcggacaaataatccacacg
ccgtttgtcaaatttatcatccacagcgcctcctacttctccttcctgctgctgctcaac
ctgtactctctggtctacaacgagggcaagaagaacacgatgggtccgccgctggagatg
atcgacttccttctcattgtctggataataggaatggtgtggtcagacgtgaagcgcctg
tggtacgaggggctggaagactttctggacgagtcgaggaaccagctgagctttgtgatg
aattctctctacctggccaccttcgccctcaagattgttgctcacagcaagttcaaaaac
gagcaggacgaaaggaagaactgggacgccttccaccccatcctggtggccgagggcctg
tttgcctttgcaaatgttctgagttacctgcgactcttcttcatgtacaccaccagctcc
attttggggcccctacagatctccatggggcagatgctgcaggagtttggaaagttcctg
ggcctcttcctgctcgtgttattctcattcaccatcggactcacccagctctatgggaag
gaccacaaaaacccagacaagaagtcaccaaaggactgcgagggcatcttctgccagcag
cagagcaacgatgcattccacaccttcatgggaacctgctacgccctgttctggtacatc
ttctccctggcgcacgtcgcactcttcgtcacccgcatcaactacacggaggagctgcgc
tcgttcgtcggtgccatgatcatcggcacgtacaacatcgtggtggtcatcgtgctgacc
aagctgctcgtggccatgctgcataaaagcttcaggcagattgccaaccatgaggataag
gagtggaagtttgctcgggccaaactctggcttagctactttgatgacaagtgtactctg
cctccacctttcaacatcctcccctcaccaaagaccatctgctacctggtgaccagcttg
agaaagtggatctgctcacacaccacaaagggcaagatgaagcgacagaatagcctgaaa
gagtggaagaacctgaagcagaagcgcgatgagaactaccagaagatcatgtgctgtctg
gttcaccgatacctgacctccacgcggcagaagatgcagagcacggaccaggccacggtg
gagaatctgaacgacctgcgccaagacctgtccaagttccgcaatgagatgagggacctg
ctgggcttccggacgtccaagtacgccatgttctacccgaggagctaa
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