Cololabis saira (Pacific saury): 133423024
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Entry
133423024 CDS
T09849
Symbol
trpa1b
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1b isoform X1
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
csai04040
]
133423024 (trpa1b)
Ion channels [BR:
csai04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
133423024 (trpa1b)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Ank_KRIT1
ANK_LRRK2
DEXQc_Suv3
PKD_channel
Motif
Other DBs
NCBI-GeneID:
133423024
NCBI-ProteinID:
XP_061569093
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Position
22:16568935..16597032
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AA seq
1118 aa
AA seq
DB search
MNFSRDVARQTSCYTYVIEDEDPAVTSLNAFELAERGDLVHLENLVRKSPEVLTEKDECG
ASPLHHAAGGGHVTLIQFIITVVGSKELNSFDDQGNVPLHWAVEKNKPESCRSLLDLGAD
PNILNTALLSPLHLAVSLRHQHLLELLLSYSATNCNLQGDLGNTPLILASSTNNCEALST
LLKNGAKLCKQNKLGHFPMHAAAFAGAKKAMEVILKAGEELGHIALNHINYLDKSNSSPL
HLAVRGGNIETIHLCIATGAKIDQQQNDRSTPLHLACTQGATEVVKLMLSTIEQVEDVIN
LTDGACQTPLHRATIFDHAELAEYLISLGADMNRTDCKGNTPLLLATSCGAWKTVPLLLK
KGTDVNVKDSCGCNFLHLAILQPKGLKNLPQEVLQHDSVKALLSCEDNEGCTPLHYACRL
GIHDSVKNMLGLSGQVGLACKSKDKKSALHFAAQFGRINTCQRLLESITDSRLLNEGDER
GLTPLHLASKGGHAKVVQLLLRKGALFHSDYKGWSCLHHAASEGYTQTMDILLSANMKLL
DKTDEDGNTALHIAARAGHVAAVRLMLGRGAELVLNKNNTSFLHEALQNGRKDVVNAVID
SDRCEEAMQLFKYGSNQGFPILDMIEFLPETCKYLLDRCVRESDHDQNSPDYHIEYNFRW
LQAPICSTKSTDESMKIQPLASVNAMVKYNRIELLNHPVCKKYLAMKWIAYGSKAHALNM
FVYLLGLLPLTHLIVTLRPTMNTTDTGEHGITMVPVSFTEQSLFISICMVMVLVMNIYSI
AKEVVQISQQRWSYFRDSSNTVDWCSAIFSLIFIIPLMMNTDGHWYWQAGALAVLQCWVG
FLLYLQRFENVGIYVVMLGEIMKTLLRIVVLFLFLMLAFSLAFYALMLNQRQFSTVQLSL
IQTFVMMVGELNYQTNFLDVYLNNELPFGILTYFILVQFILLMPILLVNLMIGLAVGDIA
EVQRNATLKRIAMQIDLHTALEDKLPYWFMKRVDKPSVTVYPNHKCSRHFLLQFISGQEE
KAEVWSRLKSKSQACTLIEGELKKQKARMKEMADTLEKQHSLMKLIIQKMEITSEADEHD
GPVNVRGSMWPLLSQAKTRQRTTSRWVPLMKAIESKRK
NT seq
3357 nt
NT seq
+upstream
nt +downstream
nt
atgaacttcagcagggatgtggcccggcagaccagttgttatacgtatgtgatagaggac
gaagatccagctgtgacaagcctaaatgcatttgagttggcagagaggggtgacctggtt
cacctggagaacctggtgagaaagagcccagaggtcctcactgagaaagatgaatgtgga
gccagtccgctccatcatgcagctggaggaggccacgtcaccctcatccaatttatcatt
actgttgtgggctcaaaggagctgaacagctttgatgaccaaggtaacgtgccgctgcac
tgggccgtggagaagaacaagccagaaagctgcaggagtcttttggacctgggggccgac
cccaacatcctcaacacggccctgctgtcccccctgcacctggctgtcagcctccgacac
caacacctgctggagctgctgttgtcctacagtgccacaaactgcaacctgcagggagac
cttggaaacaccccgctgattctggctagctccaccaataactgtgaggctctcagcacg
ttgttaaaaaatggagccaaactctgcaaacagaacaagctgggccacttccccatgcat
gcagccgcctttgcgggtgcaaagaaggccatggaagtcattctgaaggccggagaagag
ctaggccacatcgcactgaaccacatcaactatttagacaagtccaacagcagccctctc
catctggctgtacgtggtgggaatattgagaccatccatctctgcattgctaccggggcc
aaaatagaccagcaacagaatgatcggtccacaccccttcatttggcctgcacccagggt
gctaccgaggtcgttaaactgatgctctccaccattgagcaagttgaagacgtcatcaac
ctaactgatggagcttgtcagactcctctacacagggcgacaatatttgaccacgcagag
ctggcggagtacctcatttctttgggtgcagacatgaaccgcactgactgtaagggaaac
acccccctgctgctggcaaccagctgtggagcatggaaaactgttcctcttctgctgaaa
aaagggacggatgttaacgtgaaagacagctgcggttgtaatttccttcacctggccata
ctgcagcccaagggtcttaaaaatctcccacaagaagtactgcagcacgacagtgtgaag
gcgctgctgagctgcgaggataatgagggctgcaccccactccattacgcctgcaggctg
ggtatccatgactcagtgaagaacatgctgggtctctcggggcaggttggcctcgcatgc
aagtccaaggacaagaagtctgctctgcactttgctgctcagtttggacgcatcaatact
tgccagagattattggaaagcatcacagattctcgtctgctgaatgaaggtgatgagaga
ggcctgacgccgctgcatttggcttcaaaaggtgggcacgccaaggtggttcagttgctg
ctgcgcaaaggagctctctttcacagtgattacaaaggctggtcttgtctgcatcatgct
gcatctgaaggttacacacaaactatggacattctgctgtcagccaatatgaagttgctg
gataaaactgatgaggacgggaacactgcgctccatatcgctgcacgagcgggacatgtg
gctgcggtccggctcatgctgggcagaggggcagagctggtcttaaacaagaataacact
tcattcctccatgaagctctgcaaaacggaagaaaagatgtggtcaatgccgtgattgac
agtgacagatgtgaagaggctatgcagctgtttaaatatggcagcaaccagggattcccc
atcctagacatgattgagtttctgcccgagacctgcaagtacctgctggaccgctgtgtg
cgggagtcggatcatgaccaaaacagtccggattaccatattgagtacaacttcagatgg
ctccaggcccccatttgctctacgaagtcaactgatgagtccatgaagatccagccctta
gcttcagtcaacgctatggtgaagtacaatcgaattgagctcctcaaccacccggtctgc
aaaaagtatctggccatgaagtggattgcttatggcagcaaagctcatgccctcaacatg
tttgtgtatctgttagggctgctgcccttaacacacctgatagtgactttaagaccaacc
atgaacacgaccgacactggcgagcacggcatcaccatggtgccagtatccttcacagag
caaagcctgttcatatccatctgcatggtgatggtcttggtcatgaacatctactcaata
gcaaaagaagttgtgcagatctcacagcagcgctggagctacttcagggactcctccaac
acggtagactggtgttctgctattttctcccttatattcatcatccctctcatgatgaac
acggacggccactggtactggcaagccggtgcattagcagttttacaatgctgggttgga
tttctcctctatctccagaggtttgaaaacgttggcatctatgtggtgatgctgggggag
atcatgaagaccctactccgtattgtggttctgtttttgttcctgatgttggcgtttagt
ttggcgttctacgctctgatgctcaaccagagacagtttagcaccgtgcagctgtcactg
attcaaacctttgtgatgatggttggggagctgaactaccagaccaacttcttggatgtt
tatctgaacaatgagcttccctttgggatactgacatatttcatcttggtgcaatttatt
ctgctcatgccaatcctgctggtgaacctcatgattggtttagcagttggagatattgct
gaagttcagagaaatgctaccttaaaacggatcgccatgcagattgacctccacactgct
ctggaggataagctcccctactggtttatgaaacgagttgacaaaccctccgttaccgtc
taccccaatcacaagtgctccaggcacttcctattgcagttcatatcaggacaagaagaa
aaggctgaagtctggagtcgtctgaagtccaaatcacaggcttgcactttaatagagggt
gaactcaaaaagcagaaggccaggatgaaagaaatggcagacacactggagaagcagcac
agcctcatgaagctcatcatccaaaagatggagatcacttctgaggccgatgagcacgac
ggccccgtgaacgtcagaggcagcatgtggcccctcttgagtcaggccaaaacaagacag
cgcaccacgtctcgctgggtcccgctgatgaaggccatcgaatccaaacgcaagtga
DBGET
integrated database retrieval system
