Cololabis saira (Pacific saury): 133423820
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Entry
133423820 CDS
T09849
Symbol
upf2
Name
(RefSeq) regulator of nonsense transcripts 2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03013
Nucleocytoplasmic transport
csai03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
133423820 (upf2)
03015 mRNA surveillance pathway
133423820 (upf2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133423820 (upf2)
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
133423820 (upf2)
mRNA cycle factors
P-body specific factors
133423820 (upf2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
133423820
NCBI-ProteinID:
XP_061570092
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All DBs
Position
23:15801486..15827915
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AA seq
1300 aa
AA seq
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MTDVCFATISSMPAERKHSINMDEKDVSCFSNKEKDRDGERRPASSRDKPKDEAKMSGKK
DGVKEEKRKRLEEEKKKKEEKERKKKEEEKTKAEEEQKKKEEEEKRQQEEEEKKLQEEEA
KRQREEEAALIKEKEEGHQLHQEAWERHHCRKELRSKNQNAHEGRPEEAFFSRLDSSLKK
NTAFVKKLRTLTEQQRDALSNDFGSLNLSKYIGEAVSSVVEAKLKISDVGCAVHLCSLFH
QRYAEFAPLLLQAWKKHFEARKEEKAPNVSKLRTDLRFIAELTIVGLFTDKEGLSLIYEQ
LKNIIGTDRDTHTHVSVVISFCKHCGDDIAGLMPRKVKLAADKFGLGFPPSEIISTEKQQ
PFQNLLREYFTSLTKHLKKDHRELQNIERQNRRILHSKGELSEDRHKQYEEFATSYQKLL
ANTQSLADLLDENMPDLPQDKTVQEEHGPGIDIFTPGKPGEYDLEGGIWEDEDARNFYEN
LVDLKAFVPAILFKDNEKSKEGKDKDEAKDGKEAKDVASTTEELELELEALDIADEPLEL
EGPDEVENEELAKKLLDEQEQEDEEANTGSHLKLIVDAFIQQLPNCVNRDIIDKAAMDFC
MNMNTKSNRRKLVRALFTVPRQRLDLLPFYARLVATLHPCMSDVAEDLCSMLKGDFRFHI
RKKDQINIETKNKTVRFIGELAKFKMFSKTDTLHCLKMLLSDFTHHHIEMACTLLETCGR
FLFRSPESHLRTSVLLEQMMRKKQAQHLDARYVTMVENAYYYCNPPPMEKTVRKRRPPLQ
EYIRKLLYKDLSKVTTEKVLRQMRKLPWQDPEIKSYLICCMVNIWNVKYNSIHCVANLLA
GLVAYQEDVGIHVVDGVLEDIRLGMEVNQPKFNQRRISSAKFLGELYNYRMVESAVIFRT
LFSFISFGVNQDGSASVLDPPEHLFRIRLVCTLLDTCGQYFDRGSSKKKLDCFLIYFQRY
VWWKKSLDVWTKDHPFPIDIDYMISDTLELLRPKMRISCSLEEATKQVTDLEREMLNKLE
AFIVCSQKGLAMEKDGRSSAMSEGDPLDDDEDDGEDDEEGGAETEEQSGNESEMNEQEED
EGSENEEEEREEEEEENTDYLTDSNKENETDEENNEVTIRGGGLKHVACAEDEDFIQALD
KMMLENLQQRSGEAVKVHQLDVAIPLQLKSQLKKGGSGPQCIMEGESDISDTMQFVMLTR
KGNKQQYKILNVPLSSHLAANHFNQQQAEQEERMRMKKLTLDINERQEQEDYQEMMQSLA
QRPAPANTNRERRPRYQHPKGAPNADLIFKTGGRVKRARN
NT seq
3903 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatgtttgttttgctaccattagcagcatgcctgctgaacgcaagcactcaata
aacatggatgaaaaagatgtttcctgcttcagcaacaaggaaaaggacagagatggtgag
agaagaccagcatcctcccgagacaaaccgaaagatgaagccaaaatgagtggtaaaaaa
gatggtgtcaaagaagagaagagaaagcgcttagaagaagaaaagaagaagaaagaggaa
aaggaacgtaagaagaaagaggaggaaaaaactaaagcagaggaagagcagaagaagaaa
gaggaagaagagaaaagacagcaagaggaggaggaaaagaagctccaagaggaagaggct
aaacgacagcgtgaggaggaggcagctctcatcaaggaaaaggaagaaggtcatcagttg
caccaggaggcctgggagcgccatcactgcaggaaggaactccgcagcaagaaccagaac
gctcacgaaggccggcctgaagaggccttcttcagccgcctggactccagccttaagaag
aacaccgcctttgtcaagaagttgcgcacgctgaccgaacagcagcgagatgcgctttct
aatgactttggttcgctcaacctcagcaagtacattggcgaggctgttagctccgttgtg
gaggccaaactcaagatttccgatgttggctgcgctgtccatctgtgctccctcttccac
cagcgctatgcagagtttgctccattgctgttgcaggcgtggaagaaacactttgaagca
aggaaggaagagaaggctcccaacgtgagcaagctgcgcacagatttgcgatttattgca
gagcttactattgtgggcctcttcacagacaaagaaggcctttcactcatttatgagcag
ctgaaaaacattattgggactgatcgggacacacacactcatgtgtcggtggtcatcagt
ttctgcaagcactgtggggacgacatcgctggtctgatgccccgcaaggtgaaactggcg
gctgacaagtttggcttgggcttccctcctagtgaaataataagcacagagaaacagcag
cctttccagaatcttctacgagagtatttcacatctctcaccaaacacctgaagaaggac
caccgggaactgcagaacattgagagacagaacaggcgcatcttgcattccaaaggggag
ctaagtgaggacaggcacaagcaatatgaagagtttgccacttcctaccagaagctactg
gccaacacacagtctctggccgacctgctggatgaaaacatgcctgacttgcctcaggac
aaaacggtgcaggaagagcatggaccgggcattgacattttcacccctggcaagcctggg
gagtacgacctggaagggggaatttgggaggacgaagatgctcggaacttctatgagaac
ttggtggacctgaaggccttcgttcccgccatcctcttcaaagacaacgagaagagtaaa
gagggaaaggacaaggacgaggccaaagatggtaaagaggcgaaggatgtggccagcacc
acagaagagctggagctggagctggaggctcttgacatcgctgatgagcctcttgaactg
gagggaccagatgaggtggaaaatgaagagctggccaaaaagctcctggatgagcaagag
caagaggatgaggaagccaacacaggatcacatctgaagctgattgtggacgctttcatc
cagcagcttcctaactgtgtcaacagagacatcatagacaaggccgccatggacttctgc
atgaacatgaacaccaaatccaacaggaggaaacttgtgcgagccctcttcactgtcccc
agacagaggctggatctgctgcctttctacgctcgtctggtggcgactctgcatccatgc
atgtctgatgtggcggaggacctctgctccatgctgaagggagacttccgctttcatata
cgaaagaaggaccagatcaacattgaaacaaaaaataaaactgtcagattcatcggagag
ctggccaagttcaagatgttctccaaaacagacacacttcactgtcttaagatgctgttg
tctgacttcacccatcaccacatagaaatggcttgcacactgctggagacctgtggtcgc
ttcctcttcagatcgccagagtcccatttgcgtacaagtgttttactggagcaaatgatg
cgtaaaaagcaggcgcagcatctggatgcacgctatgtgaccatggtggagaacgcctat
tactactgcaaccctccacccatggagaagaccgtgaggaagaggaggccaccactgcag
gagtacatccgcaagctgctctacaaggacctgtccaaagtcaccactgagaaggtgctg
aggcagatgcgaaagctgccctggcaggacccggagatcaagagctacctgatctgctgc
atggtcaacatctggaacgtcaagtacaacagcatccactgtgtggccaacctgctggcc
ggcctggtggcctaccaggaggatgtgggcatccatgtggtggacggagtgctggaggac
atccggcttggcatggaggtcaatcagcccaaattcaaccagcggcgcatcagcagcgcc
aagttcctgggcgagctctacaactaccggatggtggagtctgcagtcatcttccgcacc
ctcttctccttcatttccttcggggtcaaccaggatggcagcgccagcgtgctggaccct
cctgagcacctgtttcgcatccgtctggtctgtaccttgcttgatacctgcggccagtac
tttgatcggggctccagcaagaagaagttggactgtttcctcatctatttccagcgctac
gtctggtggaaaaagagcttggatgtttggaccaaggaccacccattccctattgacatt
gactacatgatcagtgacactctggagctgctccgacccaagatgaggatcagctgctcc
ctggaggaggccacaaagcaggtcactgacctggagagggaaatgctcaacaaactagaa
gcgttcattgtgtgctctcaaaaaggcctggcgatggagaaggatggccgatccagcgcc
atgagcgaaggggatcctctggatgacgacgaagacgatggcgaagatgacgaagaagga
ggtgctgagactgaggagcagtcaggaaacgagagtgagatgaacgaacaggaggaagat
gaaggatccgagaatgaagaggaggagcgggaggaagaggaagaagagaacactgactac
ttgactgactccaataaagaaaatgagactgatgaagagaacaatgaagtcaccatccgt
ggtggtggactgaagcacgtggcctgtgctgaggacgaggacttcattcaggctctggat
aagatgatgctggagaatctgcagcagcgtagcggcgaggcggtgaaagtgcaccagctg
gacgtggccattccactgcagctgaagagtcagctgaagaagggcggctccggaccgcag
tgcatcatggagggagagtcggacatctctgacaccatgcagttcgtgatgttaacccgc
aaagggaacaagcagcagtataagatcctgaacgtgccgctgtcatcccacctggcggcc
aaccacttcaaccagcagcaggccgagcaggaggagcgcatgaggatgaagaaactcacc
ctggacatcaacgagaggcaggagcaggaggactaccaagagatgatgcagtccctggcc
cagcgtcctgctccggccaacaccaaccgagagcgccggcctcgataccaacacccgaaa
ggcgctcccaacgccgacctcatcttcaagactggaggaagagtgaaaagggcaagaaac
taa
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