Cololabis saira (Pacific saury): 133425155
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Entry
133425155 CDS
T09849
Name
(RefSeq) polyadenylate-binding protein 1A isoform X1
KO
K13126
polyadenylate-binding protein
Organism
csai
Cololabis saira (Pacific saury)
Pathway
csai03015
mRNA surveillance pathway
csai03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
133425155
09123 Folding, sorting and degradation
03018 RNA degradation
133425155
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133425155
03041 Spliceosome [BR:
csai03041
]
133425155
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
133425155
mRNA cycle factors
Stress granule specific factors
133425155
Spliceosome [BR:
csai03041
]
Complex C
Other components
Complex C specific factors
133425155
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RBD_DEAH11
RRM_10
RRM_5
Motif
Other DBs
NCBI-GeneID:
133425155
NCBI-ProteinID:
XP_061571823
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Position
3:complement(9332520..9340962)
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AA seq
640 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGRPLRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAREFTNVYIKNFGEDMDDEKLKELFGKYVSPSVGPALSIRVMTDETGKSKGFGF
VSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQMKQDRMTRYQGVN
LYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNG
RIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRAVPNPVLNPYQPAPPSGYFMAAIPQ
AQNRAAYYSANQLAQLRPSPRWATQGVRPQHFQNMPNAMRPSAPRPQTFNAIRAAANTNT
QVPRMMTSQRMPTQALGQRPTSASAAAAPVRAMPQYKYAAGVRNPQQHMASQPQVAMQQP
AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLH
MLESPESLRSKVDEAVAVLQAHQAKEAAQKSTTPAGVPSV
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcgcccagctaccccatggcctccctgtacgtgggggacctgcacccg
gacgtgaccgaggccatgctgtacgagaagttcagccccgccgggcccatcctgtccatc
cgggtgtgcagggacatgatcacccgccggtccctcggatacgcctacgtcaacttccag
cagccggccgacgccgaaagagccctggataccatgaactttgacgtcatcaagggcagg
cctctccgcatcatgtggtctcagcgtgacccctctctgaggaagagcggagtgggaaac
atcttcatcaagaacctggacaagtctatagacaacaaggccctctatgacacattttct
gcctttggaaacatcctctcctgcaaggtggtttgtgatgaaaatggctcaaagggttac
ggctttgtgcactttgagacccatgaggctgctgagcgtgccattgagaaaatgaacggc
atgttgctcaatgacagaaaagtatttgtcggacgcttcaaatcacgcaaagagagagag
gctgagcttggtgcccgtgcccgagagttcaccaacgtttatatcaagaactttggggag
gacatggatgacgagaagctgaaggagctgtttggcaaatatgtgtctccgtctgtaggc
cctgcactcagtatccgggtgatgacggacgagacgggcaaatccaaggggttcggcttc
gtcagcttcgagaggcacgaagatgcgcaaaaggctgtagacgacatgaatgggaaagag
ctgaacggcaggcaagtttacgtgggccgtgcgcagaagaaaggagagcgccaaaacgag
ctgaagcgcaaatttgagcagatgaaacaggatcgcatgaccagataccagggtgtcaat
ctgtacgtgaaaaacctggatgacggcctggacgatgaacgtctgcgcaaagagttttct
ccatttggaaccataacgagtgcaaaggtgatgatggagggcggccgcagcaagggcttt
ggcttcgtgtgcttctcctccccggaggaggccaccaaggccgtgacggagatgaacgga
cgcatcgtggccaccaagcccctgtacgtggccctggcccagaggaaggaggagcgccag
gctcacctgaccaaccagtacatgcagaggatggccaccgtccgcgccgtgcccaacccg
gtcctcaacccctaccagcccgcaccgccctcgggctacttcatggcggctattccccag
gcccagaaccgcgcagcatattactctgccaaccagttggcccagctccgccccagtccc
cgttgggcaacccaaggagtgcgtcctcagcatttccaaaacatgcccaatgccatgcgt
ccatcagcaccaaggccccagaccttcaacgccatccgtgctgccgccaacaccaacacc
caggtcccacgcatgatgacgtcccagcgtatgccgacccaagcgctcggccagcgcccc
accagcgcttcagccgccgctgccccggtgcgagccatgccccagtacaagtatgctgct
ggtgtgaggaacccccagcaacacatggcctcccagccacaggtcgccatgcagcaaccg
gccgttcatgtccagggccaggagccgctgactgcttccatgctggctgctgcccctcct
caggaacagaagcagatgctgggtgagcgtctgttccccctgatccagaacatgcaccca
agcctggcgggcaagatcaccggtatgctgctggagatcgacaactccgagctgcttcac
atgctcgagtcgcccgagtctctgcgctcaaaggtggatgaggccgttgctgtgctccag
gcccaccaggccaaagaggctgctcagaagtccaccacccccgctggtgttcccagcgtc
taa
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