Cololabis saira (Pacific saury): 133425222
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Entry
133425222 CDS
T09849
Name
(RefSeq) probable ribonuclease ZC3H12C
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
csai
Cololabis saira (Pacific saury)
Brite
KEGG Orthology (KO) [BR:
csai00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
csai03019
]
133425222
Messenger RNA biogenesis [BR:
csai03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
133425222
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
Regnase_1_C
UBA_6
zf-CCCH_4
UBA_N4BP1_C
zf-CCCH_2
UBA_N4BP1
Motif
Other DBs
NCBI-GeneID:
133425222
NCBI-ProteinID:
XP_061571936
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Position
24:complement(9712953..9728059)
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AA seq
916 aa
AA seq
DB search
MGQKDHGEAGSGHILALGPDLEYLHVAGAERQAGAVDGCPAMEEQGGSAGDASTAGSPPP
TLLEEGEESAPGSTLAPSADGGEGGPAHGKNAHQPLCRTPCVDLGTEGPPESPSESPAEL
GRDAPAPSGPPPGLPEPSPAPGGREYQAKLEFALKLGYSEETVRLVLSKLGPDTLINDIL
GELVKLGTKSDSEQPGGILTSTSSSSSSSSSCGCSDLLDGQRSDSPCPSDPACDQDNLRP
VVVDGSNVAMSHGNKEVFSCQGIQLAVDWFLERGHQDITVFVPAWRKEQSRPDAPITDQE
ILRRLEKEKILVFTPSRRVQGRRVVCYDDRFIVKLAYESDGIIVSNDNYRDLANEKPEWK
KFIDERLLMYSFVNDKFMPPDDPLGRHGPSLDNFLRKRPVMPEQKKQPCPYGKKCTYGHK
CKYYHPERGAQPQRAVADELRASAKTCVTSKNQGDAGLVKSHSVPAGIEAKKGAPKRQSD
PSIRALSYSDAEEKLARSRAEGQKGGGSCSGSLTVSTAPGGPPSGLALPQEPSRALAHHP
APGHDLYPHCESPDLSYYSVARAYSGLSLSSRRSPDCRYANDPDLRLGSMGSAGSECSSE
SSISCGSSCDSYGERSCPGCPPDALIEDGVHFPNPHGRLYSHHDVCGLHPADYANIQHGH
GSGPGGHGYHLGGACGQSCSHDPPPPEAPPKRPLYPLPPHLQHQPLAARSSCPGDYHSLP
QSSPHPPGSPLGRCLAPTRGESASDSHLYEHLSASHLHHRAKASPGWDAYYRQAPPPSRY
EPSTYQSLPDTRQSPWHTPPWPQDGYGQHHSSHPALHPSPTHYLSHPPPSHSPHPPYSAH
SSHLALPPHPPSSYAPQHPDSPIRGRYGDVREKAYVNLCNIFPSELVSRVMARSPHITDP
QQLAAAILAEKAQSGY
NT seq
2751 nt
NT seq
+upstream
nt +downstream
nt
atgggccagaaggaccatggggaggcaggaagcggccacatcctcgccctgggcccagat
ctggagtacctccatgtagccggagccgagcggcaagctggcgccgtcgacggctgcccc
gctatggaggagcagggggggagcgccggcgacgcctccaccgccggctcccctccaccc
accctgctagaggagggcgaggagtcggcccccggctccaccctcgccccgagcgctgat
ggaggagagggtggacccgcccacggcaagaacgcccaccagccactgtgtcggaccccg
tgtgtggacttgggcaccgaggggccccctgaatccccgtctgaatctccagcagagctc
ggacgtgacgctcccgcgccctccggacctccacccggcctccccgagccgtcaccggcg
ccgggaggcagggagtaccaggccaagctggagttcgccctgaagctgggctactcggag
gagacggtgcggctggtgctgtccaagctcggccccgacaccctcatcaacgacatcctg
ggagaactggtcaaactgggcaccaagtcggacagcgagcagccgggggggatcttaacc
tctacctcatcctcctcttcctcctcctcctcgtgcggctgctccgacttgctggacggg
cagcgctcggactcgccgtgtccctcagaccccgcctgcgaccaggacaacctgcggccg
gtcgtggtggacggcagcaacgtcgccatgagccatggcaacaaggaggtgttttcctgc
cagggcatccagctggcggtggactggttcctcgagcgcggccaccaggacatcaccgtg
ttcgtccccgcttggaggaaagagcagtcccgccccgacgcccccataacagatcaggag
atcctgcggcgcctggagaaggagaagatcctcgtcttcactccctcgcggcgcgtccaa
ggccggcgcgtggtctgctatgacgaccgcttcatcgtcaagctggcatatgagtcagac
ggcatcatcgtctccaacgacaactacagggacctggccaacgagaagcccgagtggaag
aagttcatagacgagcggctgctcatgtactcctttgtgaacgacaaattcatgccccca
gatgatcctcttggtcgtcacggtcccagcttagacaacttcctgaggaaaagaccggtt
atgcccgagcagaagaaacagccctgtccatacggaaagaagtgcacttatggccacaag
tgtaagtactaccaccccgagagaggggctcaaccccagcgcgccgtggccgacgagctg
cgcgccagcgccaagacgtgcgtcacctccaagaaccagggggacgccgggctggtgaag
agccacagcgtgccagccggcatcgaggccaagaagggcgcccccaaacggcagtcggac
cccagcatccgggcgctgtcgtacagcgacgccgaggagaagctggcgaggagcagggcg
gagggccagaagggcggcggctcatgtagcgggagtttgaccgtttccacggcgccggga
ggccccccgtccgggctggcgctcccccaggagccgtccagagcgctggctcatcacccc
gcccccggccacgacctctacccccactgcgagtctccggacctgagctactactcggtg
gcgcgtgcctactccggcctgagcctctcctccaggcgcagcccggactgccgctacgcc
aacgacccggacctgcgtctgggctccatgggctcggccggctccgagtgcagcagcgag
agcagcatcagctgcggcagcagctgcgactcctacggcgagaggtcgtgccccggctgc
ccccccgacgccctgatcgaggacggcgtccatttccccaacccccacggccggctttac
tcccatcacgacgtctgcggcctccatcctgccgactacgccaacatccaacacggccac
ggctcgggtccgggggggcacggctaccacctgggtggggcgtgtgggcagagctgctct
cacgacccgcccccacccgaagccccgccgaagcggccgctctacccgctgccccctcac
ctccagcaccagccgttggcggcgcgctccagctgccccggcgactaccactccctgccc
cagtccagcccgcacccccccggctccccgctgggccgctgcctggcccccacgcggggc
gagagcgcgtccgactcgcacctctacgaacacctctcggcgtcgcacctccaccaccgg
gccaaggcgtcgcccggctgggacgcgtactaccggcaggcgccgccgccgtcccggtac
gagccgtccacctaccagagcctgccggacacgcgccagtccccctggcacacccccccc
tggccccaagacggctacggccagcaccactcctcccacccggcgctccacccgtccccc
acgcattacctaagccacccgccgccgtcgcactctccccacccgccgtattcggctcac
agctcgcacctcgcactcccccctcaccccccatcgtcctacgcacctcagcacccggac
tcgcccatacgcggccgctacggggacgtcagggagaaggcgtacgtcaacctgtgcaac
atcttcccctcggagctggtgagccgggtgatggcccggagcccccacatcacggacccc
cagcagctggccgccgccatcctggcggagaaggcccagtcaggctactga
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